rna1047, rna1047 (mRNA) Nannochloropsis gaditana

Overview
Namerna1047
Unique Namerna1047
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length528
Alignment locationCM002456.1:1039370..1040997 -

Link to JBrowse

Properties
Property NameValue
Productvacuolar atp synthase subunit f
Orig transcript idgnl|cribi|Naga_100050g11.6860.mrna
Orig protein idgnl|cribi|Naga_100050g11.6860
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1039370..1040997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100050g11gene1008Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1047rna1047-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29637.1cds1046Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1047 ID=rna1047|Name=rna1047|organism=Nannochloropsis gaditana|type=mRNA|length=528bp
ACGAGAATATGTGCCAAGCCAGAGTCTCAGACGCCTGGCGACTTTGAGCG
AAGTTCTTCGCATTTATTCACACTTTTAATGATAAGAAGACCGATTGCAC
CGACACCGACAGGGATTACATCGTCTGAGCCCCAGCTGTTGAGAGGACGA
TGACAGTCTCAGAGTTGAAAACCACCAAAGAGGAGATGGACAAGGCACAG
ATTGACCTGGCGTTGAGAGATGCCTGTGCCCACCTTCTCATCCCTCTGAA
CAAGTGTCGTCGCATGACATTCTTCTTGCCATGGAAATGCGAAGATGAAC
GGCACGGTTATGAGGCCTGCCAGTACGCCGAGTACCGAAAGCGTGCCCAA
CTGTTGGCAGAGAAAAGGTAAGGCATGCACGGAGCTTGCTTGTTACCTTG
CGCGTCATGAGATGGAAAGCCAGTCGTGGGTTGTGAAGCTCCCAGAAGAG
AACGGACCTGCTTCTTGTGGGTGAAACATTGTTGTAAGGGGAGTGGGAGA
GACCAAGCAACGTATCTGCAGACAAAGT
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protein sequence of rna1047

>rna1047-protein ID=rna1047-protein|Name=rna1047|organism=Nannochloropsis gaditana|type=polypeptide|length=117bp
MAEEDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEE
TFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDP
EADSIMQRVNLMTGGQM
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mRNA from alignment at CM002456.1:1039370..1040997-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1047 ID=rna1047|Name=rna1047|organism=Nannochloropsis gaditana|type=mRNA|length=1628bp|location=Sequence derived from alignment at CM002456.1:1039370..1040997- (Nannochloropsis gaditana)
ACATGGGCCGCCCTCCCGAGAGCGGACGAGAAACAGCGAAAATAGCTATC
GCCTCTCACAGACCTCTCCATTAAGAGTGGTCTCAAGAACGAAAGTCTCG
ACGACCATTCTATGCACTGGGCAACTAGTTTATGTTCATATTAAGAGGGG
AAGAAGACGCGTGTCGTTTGTCCCAGGAGCACGCGTTTATGCGGTGTTCT
TCGCCTACTGCCCTCCCCATCCCCACGGAGACCTGGCACTCCCCTCAACC
TCTTCCTGCTAACTAGCAGGTTAATGTCACTGGCTCATTCACAAAGCCAT
AGATACGAAGGTTGAAAAGAAGCGGAGGATTTCTTATTACCTGGGTGCAT
GCTCTTTTTGCCGGCGACACTTACGAAATCATGCTCACGAGACTAGATTC
TTCTTCACTCCACCACAGACACGCGGAAGCGACTTGAGAGATTATGGCAG
AGGAGGACGGAAAGCTCGTGGGGGTTATTGGGGATGAGGACACGGTTACA
GGCTTCTTGCTAGCAGGCGTTGGTCACCGTACGATGGAGGGAGCGAATTT
CTTGGTTGTCAAAAATGGTAAGTCGGAAAGAGAAGGGGAAGCTGTGGTTG
AAGACTTCGTAGTGTTACCTAGACTGATGAGGATCTTTCTTACACTGTGT
ACCTTATGTTTTGTGCGTTGAGATACATACGGTACCAAGAAATATGCCCC
AGGCATGTACCAGGATGGAAGGTGTTGGAATATCGAAGAGTCCACGACAT
CAAGTAGTCGATGTAAAGAGCTTCGCCCTGACATATGGTCGAGCGTGCAC
ATCATAATCTCGTCGATGGCTTTGACATACGCTTTTTGTCATCCTGGCTA
CTCCTAGATACACCCCTTTCCTTGGTGGAAGAGACCTTCAACAGATTGAC
AGAGCGGGATGATATTGGCATCGTGCTTATCAACCAACATGTACGTAAGT
GGGCGAGCTTTTGATTGCTGTGGCGCTCCTGTGGTTTTTGTAGCTTGACA
AGCCCATCGAATGGAATCGGTTTGGATCCTCCTCACTCCCCTTCCCCCTC
CTTCCAGATCGCGAACGACATCCGCCACGTCATCAAGAACTACACTCAGA
CCATCCCCACCGTCCTAGAGATCCCGTCCAAAGACCATCCGTAAGTCGCA
ACCCCTGTTCCTCCTCTACCCTTCTCTCCTGTACACTTCCCTGTGCGGCA
CATGTGAGCAGTCCATTGCCTCACCTTGATCTGACGGTTTCCCCGACAAA
GGTACGATCCGGAGGCGGACTCCATTATGCAACGCGTCAACCTCATGACC
GGGGGCCAAATGTGATGCCTTGGCTTGGCGTCCATGATCAAGAGGGGGGC
GGATGGCGGAAACGGACAGGGAAACAGGAGGGGTTCTGTGTACAGGCATG
TGAGCACGTGTAGGCGTCGAGCCAGGATCAACAAGGGTGCTTGAAGCTTT
GGGTCGCATTGGTCGCAAACAATGGCCAGCCCGCGCTAGAGATGCAGCGC
GTGTGGTAAATGCCAACGCAAATGGTATCGTAGAAATGGATGTGCGAGAG
GCGCGAACAGGGATTGAGAGCCCAACAATAAGCCGTAGCCATCGAAAAAG
AAAAATATGAAAGAACCGGCGAGACTTT
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Coding sequence (CDS) from alignment at CM002456.1:1039370..1040997-

>rna1047 ID=rna1047|Name=rna1047|organism=Nannochloropsis gaditana|type=CDS|length=1416bp|location=Sequence derived from alignment at CM002456.1:1039370..1040997- (Nannochloropsis gaditana)
GTACGATCCGGAGGCGGACTCCATTATGCAACGCGTCAACCTCATGACCG
GGGGCCAAATGTGAATCGCGAACGACATCCGCCACGTCATCAAGAACTAC
ACTCAGACCATCCCCACCGTCCTAGAGATCCCGTCCAAAGACCATCCATA
CACCCCTTTCCTTGGTGGAAGAGACCTTCAACAGATTGACAGAGCGGGAT
GATATTGGCATCGTGCTTATCAACCAACATATGGCAGAGGAGGACGGAAA
GCTCGTGGGGGTTATTGGGGATGAGGACACGGTTACAGGCTTCTTGCTAG
CAGGCGTTGGTCACCGTACGATGGAGGGAGCGAATTTCTTGGTTGTCAAA
AATGGTACGATCCGGAGGCGGACTCCATTATGCAACGCGTCAACCTCATG
ACCGGGGGCCAAATGTGAATCGCGAACGACATCCGCCACGTCATCAAGAA
CTACACTCAGACCATCCCCACCGTCCTAGAGATCCCGTCCAAAGACCATC
CATACACCCCTTTCCTTGGTGGAAGAGACCTTCAACAGATTGACAGAGCG
GGATGATATTGGCATCGTGCTTATCAACCAACATATGGCAGAGGAGGACG
GAAAGCTCGTGGGGGTTATTGGGGATGAGGACACGGTTACAGGCTTCTTG
CTAGCAGGCGTTGGTCACCGTACGATGGAGGGAGCGAATTTCTTGGTTGT
CAAAAATGGTACGATCCGGAGGCGGACTCCATTATGCAACGCGTCAACCT
CATGACCGGGGGCCAAATGTGAATCGCGAACGACATCCGCCACGTCATCA
AGAACTACACTCAGACCATCCCCACCGTCCTAGAGATCCCGTCCAAAGAC
CATCCATACACCCCTTTCCTTGGTGGAAGAGACCTTCAACAGATTGACAG
AGCGGGATGATATTGGCATCGTGCTTATCAACCAACATATGGCAGAGGAG
GACGGAAAGCTCGTGGGGGTTATTGGGGATGAGGACACGGTTACAGGCTT
CTTGCTAGCAGGCGTTGGTCACCGTACGATGGAGGGAGCGAATTTCTTGG
TTGTCAAAAATGGTACGATCCGGAGGCGGACTCCATTATGCAACGCGTCA
ACCTCATGACCGGGGGCCAAATGTGAATCGCGAACGACATCCGCCACGTC
ATCAAGAACTACACTCAGACCATCCCCACCGTCCTAGAGATCCCGTCCAA
AGACCATCCATACACCCCTTTCCTTGGTGGAAGAGACCTTCAACAGATTG
ACAGAGCGGGATGATATTGGCATCGTGCTTATCAACCAACATATGGCAGA
GGAGGACGGAAAGCTCGTGGGGGTTATTGGGGATGAGGACACGGTTACAG
GCTTCTTGCTAGCAGGCGTTGGTCACCGTACGATGGAGGGAGCGAATTTC
TTGGTTGTCAAAAATG
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Synonyms
Publications