EWM29637.1, cds1046 (CDS) Nannochloropsis gaditana

Overview
NameEWM29637.1
Unique Namecds1046
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1040431..1040554 -
Alignment locationCM002456.1:1040058..1040140 -
Alignment locationCM002456.1:1039858..1039940 -
Alignment locationCM002456.1:1039683..1039746 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29637.1
Productvacuolar atp synthase subunit f
Orig transcript idgnl|cribi|Naga_100050g11.6860.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1040431..1040554 -
CM002456.1supercontigCM002456.1:1040058..1040140 -
CM002456.1supercontigCM002456.1:1039858..1039940 -
CM002456.1supercontigCM002456.1:1039683..1039746 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005215transporter activity
GO:0046961proton-transporting ATPase activity, rotational mechanism
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0015991ATP hydrolysis coupled proton transport
GO:0034220ion transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0033180proton-transporting V-type ATPase, V1 domain
Vocabulary: INTERPRO
TermDefinition
IPR005772ATPase_V1-cplx_fsu_euk
IPR008218ATPase_V1-cplx_f_g_su
Homology
BLAST of EWM29637.1 vs. NCBI_GenBank
Match: gi|585112209|gb|EWM29637.1| (vacuolar atp synthase subunit f [Nannochloropsis gaditana])

HSP 1 Score: 239.195 bits (609), Expect = 5.962e-80
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0
Query:    1 MAEEDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTGGQM 117
            MAEEDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTGGQM
Sbjct:    1 MAEEDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTGGQM 117          
BLAST of EWM29637.1 vs. NCBI_GenBank
Match: gi|1072226777|gb|OEU11518.1| (vacuolar ATP synthase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 180.644 bits (457), Expect = 9.467e-57
Identity = 83/112 (74.11%), Postives = 95/112 (84.82%), Query Frame = 0
Query:    4 EDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTGG 115
            E GKLV VIGDEDTVTGFLLAGVGHRT  G+NFL+VK DTPL  VEE F   + RDD+GI+LINQHIA+DIRH++K+Y +TIPTVLEIPSK+HPYDPE D IMQRVN+  GG
Sbjct:    2 EAGKLVAVIGDEDTVTGFLLAGVGHRTAHGSNFLIVKQDTPLQQVEEAFQSFSTRDDVGIILINQHIASDIRHILKDYNETIPTVLEIPSKEHPYDPEQDYIMQRVNMYLGG 113          
BLAST of EWM29637.1 vs. NCBI_GenBank
Match: gi|219130261|ref|XP_002185287.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403202|gb|EEC43156.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 177.948 bits (450), Expect = 9.588e-56
Identity = 82/114 (71.93%), Postives = 96/114 (84.21%), Query Frame = 0
Query:    4 EDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTGGQM 117
            E GKL+ VIGDEDTVTGFLLAGVGHRT +G+NFL+VK DT L  VEE F   + RDD+GI+LINQH+ANDIRH++K+Y +TIPTVLEIPSK+HPYDPE D IMQRVN+  GG M
Sbjct:    2 EVGKLIAVIGDEDTVTGFLLAGVGHRTADGSNFLIVKQDTKLQQVEEAFQNFSVRDDVGIILINQHVANDIRHILKDYHETIPTVLEIPSKEHPYDPEQDYIMQRVNMFLGGGM 115          
BLAST of EWM29637.1 vs. NCBI_GenBank
Match: gi|298706330|emb|CBJ29345.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 176.792 bits (447), Expect = 2.833e-55
Identity = 81/113 (71.68%), Postives = 97/113 (85.84%), Query Frame = 0
Query:    3 EEDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTGG 115
            +E GKL+ +IGDEDTVTGFLLAGVGHRT+   NFLVVKNDT +S +E+ FNRLT RDDI IVLINQH+AN+IRH++ +Y++TIPTVLEIPSKD PYDPE D IMQR+N+M G 
Sbjct:    2 DESGKLIAIIGDEDTVTGFLLAGVGHRTVNTTNFLVVKNDTTVSQIEDAFNRLTARDDIAIVLINQHVANEIRHLLGSYSKTIPTVLEIPSKDVPYDPEQDYIMQRINMMLGA 114          
BLAST of EWM29637.1 vs. NCBI_GenBank
Match: gi|224010683|ref|XP_002294299.1| (v-type H+ transporting ATPase, partial [Thalassiosira pseudonana CCMP1335] >gi|220970316|gb|EED88654.1| v-type H+ transporting ATPase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 176.407 bits (446), Expect = 3.324e-55
Identity = 80/110 (72.73%), Postives = 93/110 (84.55%), Query Frame = 0
Query:    6 GKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTGG 115
            GKLV VIGDEDTVTGFLLAG+GHRT +  NFL+VK DTP  ++E T    T+RDDIGI+LINQH+AND+RHV+K+Y QTIPTVLEIPSK+HPYDPE D IMQRVN+  GG
Sbjct:    1 GKLVAVIGDEDTVTGFLLAGIGHRTADSTNFLIVKQDTPTPVIESTLKAFTQRDDIGIILINQHVANDMRHVLKDYNQTIPTVLEIPSKEHPYDPEQDYIMQRVNMFLGG 110          
BLAST of EWM29637.1 vs. NCBI_GenBank
Match: gi|1210521347|dbj|GAX19804.1| (V-type H+-transporting ATPase subunit F [Fistulifera solaris])

HSP 1 Score: 175.252 bits (443), Expect = 1.167e-54
Identity = 82/112 (73.21%), Postives = 95/112 (84.82%), Query Frame = 0
Query:    4 EDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTGG 115
            E GKLV VIGDEDTVTGFLLAGVGHRT +G+NFLVVK DT L  +EE F + + R+D+GI+LINQHIAN+IRHV+K+Y  TIPTVLEIPSK+HPYDPE D IMQRVN+  GG
Sbjct:    2 EVGKLVAVIGDEDTVTGFLLAGVGHRTAQGSNFLVVKPDTKLQSIEEAFQQFSTREDVGIILINQHIANNIRHVLKDYHSTIPTVLEIPSKEHPYDPEQDYIMQRVNMFLGG 113          
BLAST of EWM29637.1 vs. NCBI_GenBank
Match: gi|1210518360|dbj|GAX22774.1| (V-type H+-transporting ATPase subunit F [Fistulifera solaris])

HSP 1 Score: 177.563 bits (449), Expect = 2.124e-54
Identity = 82/112 (73.21%), Postives = 95/112 (84.82%), Query Frame = 0
Query:    4 EDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTGG 115
            E GKLV VIGDEDTVTGFLLAGVGHRT +G+NFLVVK DT L  +EE F + + R+D+GI+LINQHIAN+IRHV+K+Y  TIPTVLEIPSK+HPYDPE D IMQRVN+  GG
Sbjct:   84 EVGKLVAVIGDEDTVTGFLLAGVGHRTAQGSNFLVVKPDTKLQSIEEAFQQFSTREDVGIILINQHIANNIRHVLKDYHSTIPTVLEIPSKEHPYDPEQDYIMQRVNMFLGG 195          
BLAST of EWM29637.1 vs. NCBI_GenBank
Match: gi|669150272|ref|XP_008610698.1| (V-type ATPase, F subunit [Saprolegnia diclina VS20] >gi|813142230|ref|XP_012199222.1| V-type ATPase [Saprolegnia parasitica CBS 223.65] >gi|530737694|gb|EQC35936.1| V-type ATPase, F subunit [Saprolegnia diclina VS20] >gi|641536145|gb|KDO30041.1| V-type ATPase [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 170.629 bits (431), Expect = 8.200e-53
Identity = 80/112 (71.43%), Postives = 92/112 (82.14%), Query Frame = 0
Query:    3 EEDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTG 114
            E   KLVGVIGDEDTVTGF+LAGVGHRT EG NFLVVK  TP+S++E+ F RL+ RDDI I+LINQH+A +IRH++  Y QTIPTVLEIPSKD PYDP  D IM+RVNLM G
Sbjct:    4 ESATKLVGVIGDEDTVTGFILAGVGHRTAEGTNFLVVKPTTPISVIEDAFKRLSSRDDIAIILINQHVAEEIRHLLNAYEQTIPTVLEIPSKDLPYDPSKDYIMKRVNLMLG 115          
BLAST of EWM29637.1 vs. NCBI_GenBank
Match: gi|1173927816|gb|OQR81622.1| (H - or Na -translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily [Thraustotheca clavata])

HSP 1 Score: 169.088 bits (427), Expect = 2.842e-52
Identity = 79/111 (71.17%), Postives = 93/111 (83.78%), Query Frame = 0
Query:    4 EDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTG 114
            ++ KLVGVIGDEDTVTGF+LAGVGHRT EG NFLVVK  TP+S++E+ F +LT RDDI I+LINQH+A +IRH++  Y QTIPTVLEIPSKD PYDP  D IM+RVNLM G
Sbjct:    2 DNTKLVGVIGDEDTVTGFILAGVGHRTAEGTNFLVVKPTTPISVIEDAFKKLTSRDDIAIILINQHVAEEIRHLLNAYEQTIPTVLEIPSKDLPYDPSKDYIMKRVNLMLG 112          
BLAST of EWM29637.1 vs. NCBI_GenBank
Match: gi|1173929879|gb|OQR83041.1| (H - or Na -translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily [Achlya hypogyna])

HSP 1 Score: 168.703 bits (426), Expect = 3.780e-52
Identity = 80/111 (72.07%), Postives = 92/111 (82.88%), Query Frame = 0
Query:    4 EDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTG 114
            E  KLVGVIGDEDTVTGF+LAGVGHRT EG NFLVVK  TP+S++E+ F +L+ RDDI I+LINQHIA +IRH++  Y QTIPTVLEIPSKD PYDP  D IM+RVNLM G
Sbjct:    2 EGTKLVGVIGDEDTVTGFILAGVGHRTAEGTNFLVVKPTTPISVIEDAFRKLSSRDDIAIILINQHIAEEIRHLLNAYEQTIPTVLEIPSKDLPYDPSKDYIMKRVNLMLG 112          
The following BLAST results are available for this feature:
BLAST of EWM29637.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112209|gb|EWM29637.1|5.962e-80100.00vacuolar atp synthase subunit f [Nannochloropsis g... [more]
gi|1072226777|gb|OEU11518.1|9.467e-5774.11vacuolar ATP synthase [Fragilariopsis cylindrus CC... [more]
gi|219130261|ref|XP_002185287.1|9.588e-5671.93predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|298706330|emb|CBJ29345.1|2.833e-5571.68conserved unknown protein [Ectocarpus siliculosus][more]
gi|224010683|ref|XP_002294299.1|3.324e-5572.73v-type H+ transporting ATPase, partial [Thalassios... [more]
gi|1210521347|dbj|GAX19804.1|1.167e-5473.21V-type H+-transporting ATPase subunit F [Fistulife... [more]
gi|1210518360|dbj|GAX22774.1|2.124e-5473.21V-type H+-transporting ATPase subunit F [Fistulife... [more]
gi|669150272|ref|XP_008610698.1|8.200e-5371.43V-type ATPase, F subunit [Saprolegnia diclina VS20... [more]
gi|1173927816|gb|OQR81622.1|2.842e-5271.17H - or Na -translocating F-type, V-type and A-type... [more]
gi|1173929879|gb|OQR83041.1|3.780e-5272.07H - or Na -translocating F-type, V-type and A-type... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1047rna1047Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications