EWM29637.1, cds1046 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29637.1 vs. NCBI_GenBank
Match: gi|585112209|gb|EWM29637.1| (vacuolar atp synthase subunit f [Nannochloropsis gaditana]) HSP 1 Score: 239.195 bits (609), Expect = 5.962e-80 Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0
Query: 1 MAEEDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTGGQM 117
MAEEDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTGGQM
Sbjct: 1 MAEEDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTGGQM 117
BLAST of EWM29637.1 vs. NCBI_GenBank
Match: gi|1072226777|gb|OEU11518.1| (vacuolar ATP synthase [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 180.644 bits (457), Expect = 9.467e-57 Identity = 83/112 (74.11%), Postives = 95/112 (84.82%), Query Frame = 0
Query: 4 EDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTGG 115
E GKLV VIGDEDTVTGFLLAGVGHRT G+NFL+VK DTPL VEE F + RDD+GI+LINQHIA+DIRH++K+Y +TIPTVLEIPSK+HPYDPE D IMQRVN+ GG
Sbjct: 2 EAGKLVAVIGDEDTVTGFLLAGVGHRTAHGSNFLIVKQDTPLQQVEEAFQSFSTRDDVGIILINQHIASDIRHILKDYNETIPTVLEIPSKEHPYDPEQDYIMQRVNMYLGG 113
BLAST of EWM29637.1 vs. NCBI_GenBank
Match: gi|219130261|ref|XP_002185287.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403202|gb|EEC43156.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 177.948 bits (450), Expect = 9.588e-56 Identity = 82/114 (71.93%), Postives = 96/114 (84.21%), Query Frame = 0
Query: 4 EDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTGGQM 117
E GKL+ VIGDEDTVTGFLLAGVGHRT +G+NFL+VK DT L VEE F + RDD+GI+LINQH+ANDIRH++K+Y +TIPTVLEIPSK+HPYDPE D IMQRVN+ GG M
Sbjct: 2 EVGKLIAVIGDEDTVTGFLLAGVGHRTADGSNFLIVKQDTKLQQVEEAFQNFSVRDDVGIILINQHVANDIRHILKDYHETIPTVLEIPSKEHPYDPEQDYIMQRVNMFLGGGM 115
BLAST of EWM29637.1 vs. NCBI_GenBank
Match: gi|298706330|emb|CBJ29345.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 176.792 bits (447), Expect = 2.833e-55 Identity = 81/113 (71.68%), Postives = 97/113 (85.84%), Query Frame = 0
Query: 3 EEDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTGG 115
+E GKL+ +IGDEDTVTGFLLAGVGHRT+ NFLVVKNDT +S +E+ FNRLT RDDI IVLINQH+AN+IRH++ +Y++TIPTVLEIPSKD PYDPE D IMQR+N+M G
Sbjct: 2 DESGKLIAIIGDEDTVTGFLLAGVGHRTVNTTNFLVVKNDTTVSQIEDAFNRLTARDDIAIVLINQHVANEIRHLLGSYSKTIPTVLEIPSKDVPYDPEQDYIMQRINMMLGA 114
BLAST of EWM29637.1 vs. NCBI_GenBank
Match: gi|224010683|ref|XP_002294299.1| (v-type H+ transporting ATPase, partial [Thalassiosira pseudonana CCMP1335] >gi|220970316|gb|EED88654.1| v-type H+ transporting ATPase, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 176.407 bits (446), Expect = 3.324e-55 Identity = 80/110 (72.73%), Postives = 93/110 (84.55%), Query Frame = 0
Query: 6 GKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTGG 115
GKLV VIGDEDTVTGFLLAG+GHRT + NFL+VK DTP ++E T T+RDDIGI+LINQH+AND+RHV+K+Y QTIPTVLEIPSK+HPYDPE D IMQRVN+ GG
Sbjct: 1 GKLVAVIGDEDTVTGFLLAGIGHRTADSTNFLIVKQDTPTPVIESTLKAFTQRDDIGIILINQHVANDMRHVLKDYNQTIPTVLEIPSKEHPYDPEQDYIMQRVNMFLGG 110
BLAST of EWM29637.1 vs. NCBI_GenBank
Match: gi|1210521347|dbj|GAX19804.1| (V-type H+-transporting ATPase subunit F [Fistulifera solaris]) HSP 1 Score: 175.252 bits (443), Expect = 1.167e-54 Identity = 82/112 (73.21%), Postives = 95/112 (84.82%), Query Frame = 0
Query: 4 EDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTGG 115
E GKLV VIGDEDTVTGFLLAGVGHRT +G+NFLVVK DT L +EE F + + R+D+GI+LINQHIAN+IRHV+K+Y TIPTVLEIPSK+HPYDPE D IMQRVN+ GG
Sbjct: 2 EVGKLVAVIGDEDTVTGFLLAGVGHRTAQGSNFLVVKPDTKLQSIEEAFQQFSTREDVGIILINQHIANNIRHVLKDYHSTIPTVLEIPSKEHPYDPEQDYIMQRVNMFLGG 113
BLAST of EWM29637.1 vs. NCBI_GenBank
Match: gi|1210518360|dbj|GAX22774.1| (V-type H+-transporting ATPase subunit F [Fistulifera solaris]) HSP 1 Score: 177.563 bits (449), Expect = 2.124e-54 Identity = 82/112 (73.21%), Postives = 95/112 (84.82%), Query Frame = 0
Query: 4 EDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTGG 115
E GKLV VIGDEDTVTGFLLAGVGHRT +G+NFLVVK DT L +EE F + + R+D+GI+LINQHIAN+IRHV+K+Y TIPTVLEIPSK+HPYDPE D IMQRVN+ GG
Sbjct: 84 EVGKLVAVIGDEDTVTGFLLAGVGHRTAQGSNFLVVKPDTKLQSIEEAFQQFSTREDVGIILINQHIANNIRHVLKDYHSTIPTVLEIPSKEHPYDPEQDYIMQRVNMFLGG 195
BLAST of EWM29637.1 vs. NCBI_GenBank
Match: gi|669150272|ref|XP_008610698.1| (V-type ATPase, F subunit [Saprolegnia diclina VS20] >gi|813142230|ref|XP_012199222.1| V-type ATPase [Saprolegnia parasitica CBS 223.65] >gi|530737694|gb|EQC35936.1| V-type ATPase, F subunit [Saprolegnia diclina VS20] >gi|641536145|gb|KDO30041.1| V-type ATPase [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 170.629 bits (431), Expect = 8.200e-53 Identity = 80/112 (71.43%), Postives = 92/112 (82.14%), Query Frame = 0
Query: 3 EEDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTG 114
E KLVGVIGDEDTVTGF+LAGVGHRT EG NFLVVK TP+S++E+ F RL+ RDDI I+LINQH+A +IRH++ Y QTIPTVLEIPSKD PYDP D IM+RVNLM G
Sbjct: 4 ESATKLVGVIGDEDTVTGFILAGVGHRTAEGTNFLVVKPTTPISVIEDAFKRLSSRDDIAIILINQHVAEEIRHLLNAYEQTIPTVLEIPSKDLPYDPSKDYIMKRVNLMLG 115
BLAST of EWM29637.1 vs. NCBI_GenBank
Match: gi|1173927816|gb|OQR81622.1| (H - or Na -translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily [Thraustotheca clavata]) HSP 1 Score: 169.088 bits (427), Expect = 2.842e-52 Identity = 79/111 (71.17%), Postives = 93/111 (83.78%), Query Frame = 0
Query: 4 EDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTG 114
++ KLVGVIGDEDTVTGF+LAGVGHRT EG NFLVVK TP+S++E+ F +LT RDDI I+LINQH+A +IRH++ Y QTIPTVLEIPSKD PYDP D IM+RVNLM G
Sbjct: 2 DNTKLVGVIGDEDTVTGFILAGVGHRTAEGTNFLVVKPTTPISVIEDAFKKLTSRDDIAIILINQHVAEEIRHLLNAYEQTIPTVLEIPSKDLPYDPSKDYIMKRVNLMLG 112
BLAST of EWM29637.1 vs. NCBI_GenBank
Match: gi|1173929879|gb|OQR83041.1| (H - or Na -translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily [Achlya hypogyna]) HSP 1 Score: 168.703 bits (426), Expect = 3.780e-52 Identity = 80/111 (72.07%), Postives = 92/111 (82.88%), Query Frame = 0
Query: 4 EDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTG 114
E KLVGVIGDEDTVTGF+LAGVGHRT EG NFLVVK TP+S++E+ F +L+ RDDI I+LINQHIA +IRH++ Y QTIPTVLEIPSKD PYDP D IM+RVNLM G
Sbjct: 2 EGTKLVGVIGDEDTVTGFILAGVGHRTAEGTNFLVVKPTTPISVIEDAFRKLSSRDDIAIILINQHIAEEIRHLLNAYEQTIPTVLEIPSKDLPYDPSKDYIMKRVNLMLG 112 The following BLAST results are available for this feature:
BLAST of EWM29637.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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