EWM29628.1, cds1041 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM29628.1 vs. NCBI_GenBank
Match: gi|585112200|gb|EWM29628.1| (cyclin delta-3 [Nannochloropsis gaditana]) HSP 1 Score: 739.954 bits (1909), Expect = 0.000e+0 Identity = 363/363 (100.00%), Postives = 363/363 (100.00%), Query Frame = 0 Query: 1 MPRVLLAFLALLGSSTSYAFAPPPHPRSLKGHLRHSSRQNLVARHLLQDPVTTAADFLQNEAGIPPPSDLSALIQLLLYRGEESVFPSENTELHPLVIPLTKSGDEYTCLLRWPTPQEGAPVPVVKARPGLSGLKLVALSTLDLAHRLAAEEDHGQGREAEWAASLVNAYLPAEKQYVRGAVEKVGYGLERYLFLKVGSFPDVYKFLTEFHMSKGDQASALVTAEKAYNTFNGWGQPYMEYCRLLQGMKGRELEMRDAAFAALRTPLWTVADDDGDLEMVLNAAKSSREKAADKFWKLYEDERLQEVKQGKLPEQVALDRAAYLMDAALVGGNGIRSWSDVRPPLAELYREAGMRELADFVER 363 MPRVLLAFLALLGSSTSYAFAPPPHPRSLKGHLRHSSRQNLVARHLLQDPVTTAADFLQNEAGIPPPSDLSALIQLLLYRGEESVFPSENTELHPLVIPLTKSGDEYTCLLRWPTPQEGAPVPVVKARPGLSGLKLVALSTLDLAHRLAAEEDHGQGREAEWAASLVNAYLPAEKQYVRGAVEKVGYGLERYLFLKVGSFPDVYKFLTEFHMSKGDQASALVTAEKAYNTFNGWGQPYMEYCRLLQGMKGRELEMRDAAFAALRTPLWTVADDDGDLEMVLNAAKSSREKAADKFWKLYEDERLQEVKQGKLPEQVALDRAAYLMDAALVGGNGIRSWSDVRPPLAELYREAGMRELADFVER Sbjct: 1 MPRVLLAFLALLGSSTSYAFAPPPHPRSLKGHLRHSSRQNLVARHLLQDPVTTAADFLQNEAGIPPPSDLSALIQLLLYRGEESVFPSENTELHPLVIPLTKSGDEYTCLLRWPTPQEGAPVPVVKARPGLSGLKLVALSTLDLAHRLAAEEDHGQGREAEWAASLVNAYLPAEKQYVRGAVEKVGYGLERYLFLKVGSFPDVYKFLTEFHMSKGDQASALVTAEKAYNTFNGWGQPYMEYCRLLQGMKGRELEMRDAAFAALRTPLWTVADDDGDLEMVLNAAKSSREKAADKFWKLYEDERLQEVKQGKLPEQVALDRAAYLMDAALVGGNGIRSWSDVRPPLAELYREAGMRELADFVER 363
BLAST of EWM29628.1 vs. NCBI_GenBank
Match: gi|299471231|emb|CBN79086.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 218.779 bits (556), Expect = 1.600e-64 Identity = 129/310 (41.61%), Postives = 186/310 (60.00%), Query Frame = 0 Query: 56 DFLQNEAGIP-PPSDLSALIQLLLYRGEESVFPSENTELHPLVIPLTKSGDEY-TCLLRWPTPQEGAPVPVVKARPGLSGLKLVALSTLDLAHRLAAEEDHGQGREAEWAASLVNAYLP-AEKQYVRGAVEKVGYGLERYLFLKVGSFPDVYKFLTEFHMSKGDQASALVTAEKAYNTFNGWGQPYMEYCRLLQGMKGRELEMRDAAFAALRTPLWTVADDDGDLEMVLNAAKSSREKAADKFWK-LYEDERLQEVKQGKLPEQVALDRAAYLMDAALVGGNGIRSWSDVRPPLAELYREAGMRELADFV 361 +F++++A P PP L L++ L ++G V P++ L+P ++PL K D T LLRWPT E +PVV R G +GL+L+A + R+ AEED ++E L N LP A+ Y +GAVE +G G+E+YL L+VG+F DVY++LT H+ KGD +AL +AEKA F GWG+PY Y R+L M RE+E +DAA +LR P WT++ + DLE V+ A + ++ + DE+ ++ +GK P QVALDRAA+LMDA G + W VR LAE Y + G+ ++A FV Sbjct: 69 NFIKDKAKFPNPPRRLPTLLRFLQHKGLTPVDPADRAGLNPFLVPLVKGDDGVVTGLLRWPTSPETLEMPVV--RNGETGLELLADNAEHFIRRVVAEEDFAGSADSEELIRLGNEGLPEADPLYEKGAVENLGVGVEKYLALRVGAFADVYEWLTASHLEKGDSTAALASAEKANEIFVGWGRPYGHYARVLAKMDRREMEAKDAAKVSLRCPCWTISPNSKDLEEVVKIAGYEDMASVLTMYEGMAADEQPDKINEGKSPMQVALDRAAHLMDAVAFGH---KDWDGVREELAERYDQGGIPDIARFV 373
BLAST of EWM29628.1 vs. NCBI_GenBank
Match: gi|375332103|gb|AFA52591.1| (hypothetical protein [Vaucheria litorea]) HSP 1 Score: 217.624 bits (553), Expect = 2.344e-64 Identity = 134/365 (36.71%), Postives = 195/365 (53.42%), Query Frame = 0 Query: 3 RVLLAFLALLGSSTSYAFAPPPHPRSLKGHLRHSSRQNLVARHLLQDPVTTAADFLQNEAGIP-PPSDLSALIQLLLYRGEESVFPSENTELHPLVIPLTKSGDEYTC---LLRWPTPQEGAPVPVVKARPGLSGLKLVALSTLDLAHRLAAEEDHGQGREAEWAASLVNAYLPAE-KQYVRGAVEKVGYGLERYLFLKVGSFPDVYKFLTEFHMSKGDQASALVTAEKAYNTFNGWGQPYMEYCRLLQGMKGRELEMRDAAFAALRTPLWTVADDDGDLEMVLNAAKSSREKAADKFW-KLYEDERLQEVKQGKLPEQVALDRAAYLMDAALVGGNGIRSWSDVRPPLAELYREAGMRELADFV 361 R++L ++L S++S + K L SS N H +FL+++A + PP L L++L + E+ P++ LHP IPL SGD++ LLRWPT + P+P+VKA G++L+A R+A+EED + ++ L N LP K Y G+ +GL+++ L +G FPD+Y +L H+S+GD+ SAL AEK F GWG PY Y + L MKGR LE RDAA A+R PLWT+ D +L+ + E + ++ ED + + +GK P Q+ALDRAA++MDA +VG +W DVR L LY+EAGM LA+FV Sbjct: 4 RIMLCIFSILTSTSSLHSIRKIRKFTSKSRLFDSSYDNQKTLH----------EFLKSKANVANPPKRLETLLKLFEIKKVETCDPNDRRNLHPFFIPLANSGDDFGSKIGLLRWPTAPDKFPMPLVKANS--VGMELMANDIDMYIRRVASEEDFKETSISKDIVKLANEGLPENSKPYQGGSAANFKFGLQKFQLLNIGPFPDLYVWLVNSHLSRGDEISALTAAEKFNELFPGWGYPYAFYSKTLSRMKGRHLEARDAAKVAMRCPLWTLTLDKAELKSIFELGGYGNEIDVEVLHRRMAEDVQEDKKNEGKQPVQIALDRAAHVMDAVVVGRG---TWGDVREELYGLYKEAGMSHLAEFV 353
BLAST of EWM29628.1 vs. NCBI_GenBank
Match: gi|873231151|emb|CEM08953.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 201.445 bits (511), Expect = 1.891e-57 Identity = 135/328 (41.16%), Postives = 179/328 (54.57%), Query Frame = 0 Query: 57 FLQNEAGIP----PPSDLSALIQLLLYRGEESVFPSENT-ELHPLVIPLTK--SGDE-----YTCLLRWPTPQEGAPVPVVKARPGLSGLKLVALSTLDLAHRLAAEEDHGQGREAEWAASLVNAYLPAEKQYVRGAVEKVGYGLERYLFLK-VGSFPDVYKFLTEFHMSKGDQASALVTAEKAYNTFNGWGQPYMEYCRLLQGMKGRELEMRDAAFAALRTPLWTVADDDGDLEMVLN-AAKSSREKAADKFWKLYEDERLQEVKQG-KLPEQVALDRAAYLMDAAL------VGGNG--IRSWSDVRPPLAELYREAGMRELADFV 361 FL++ A +P P +L I LL RG E V PS + HP IPL + S DE Y LL+WP+ E P+PVV RPG SG+ LV+ L R A EED A LVN+ L + Y G V ++G GL RYL LK VG FPDVY+ L + H++KGD SA+V +EK Y GWG+P + L+ +G RDAA AL+ P+WT A DD +L ++ AA S ++ D F + D R +E+++G KL VAL+RAA+LMDA + GG G WS ++ LA+LY E G E+A FV Sbjct: 82 FLRDVAAVPEATLPSKELPHFISLLQRRGYEVVSPSPSRGNFHPFFIPLARNTSADESNPSSYLGLLKWPSAPEDMPLPVV--RPGPSGVSLVSFDIRSLMKRFAVEEDLRGDETAGETVQLVNSLLNEGEGYELGDVHRLGLGLPRYLALKRVGRFPDVYEALVDLHLAKGDTYSAMVASEKYYKEVKGWGRPLAYHADLMATHRGNTEVARDAAKVALKLPIWTTAADDAELRRTVDLAADRSYDEYRDSFLRRSRDPRTEEIQRGRKLKYVVALERAAWLMDAMMFGLKSKTGGEGPVYVPWSAIKQQLADLYTEGGAPEMARFV 407
BLAST of EWM29628.1 vs. NCBI_GenBank
Match: gi|302767268|ref|XP_002967054.1| (hypothetical protein SELMODRAFT_168968 [Selaginella moellendorffii] >gi|300165045|gb|EFJ31653.1| hypothetical protein SELMODRAFT_168968 [Selaginella moellendorffii]) HSP 1 Score: 183.726 bits (465), Expect = 3.398e-51 Identity = 125/335 (37.31%), Postives = 177/335 (52.84%), Query Frame = 0 Query: 32 HLRHSSRQNLVARHLLQDPVTTAADFLQNEAGIPPPSDLSALIQLLLYRGEESVFPSENTELHPLVIPLTK-SGDEYTCLLRWPTPQEGAPVPVVKARPGLSGLKLVALSTLDLAHRLAAEED-HGQGREAEWAASLVNAYLPAEKQYVRGAVEKVGY-GLERYLFLKVGSFPDVYKFLTEFHMSKGDQASALVTAE--KAYNTFNGWGQPYMEYCRLLQGMKGRELEMRDAAFAALRTPLWTVADDDGDLEMVLNAAKSSREKAADKFWKLYEDERLQEVKQGKLPEQVALDRAAYLMDAALVGGNGIRSWSDVRPPLAELYREAGMRELADFV 361 H S + + L + +F++N AG+ PP+ L L+ +L +GE+ V P + LHPL IPL++ S T LLRWPTP EG +PVV+ GL L++ S ++ EE+ HG+G AA P Y RG E GL+ YL KVG FPDV++ L H+ KGD+ SALVT E F G+G+P + L+ + GR+ E +DAA AL++P WT+ + + V A EK K+ E+ R +E+ +GK PEQVALD+AA+L+D V GN W ++ LA Y EAG+ +A FV Sbjct: 30 HCAAISSSGIESPSLARGVTDNHGNFVRNVAGLEPPTQLQMLLDVLQAKGEQVVSPEKRQGLHPLAIPLSQNSTGTITALLRWPTPPEGMAIPVVEVH--TYGLCLLSKSVEQYVQKILVEEEVHGRGDACYSAAVASAGGDPDRVPYKRGDFENSKLAGLDVYLMKKVGLFPDVFERLALKHLEKGDEVSALVTGEFYVTKKHFPGFGRPLVFNAELMLKI-GRKSEAKDAARIALKSPWWTLG---CEYKTVAEIAGWGDEKVEYMREKMTEEGRKEELNKGKAPEQVALDQAAFLLDLGTVDGN----WDEISEKLASFYTEAGLDTIAKFV 354
BLAST of EWM29628.1 vs. NCBI_GenBank
Match: gi|302755058|ref|XP_002960953.1| (hypothetical protein SELMODRAFT_74342, partial [Selaginella moellendorffii] >gi|300171892|gb|EFJ38492.1| hypothetical protein SELMODRAFT_74342, partial [Selaginella moellendorffii]) HSP 1 Score: 183.726 bits (465), Expect = 5.272e-51 Identity = 125/313 (39.94%), Postives = 173/313 (55.27%), Query Frame = 0 Query: 55 ADFLQNEAGIPPPSDLSALIQLLLYRGEESVFPSENTELHPLVIPLTK-SGDEYTCLLRWPTPQEGAPVPVVKARPGLSGLKLVALSTLDLAHRLAAEED-HGQGREAEWAASLVNAYLPAEKQYVRGAVEKVGY-GLERYLFLKVGSFPDVYKFLTEFHMSKGDQASALVTAEKAYNT---FNGWGQPYMEYCRLLQGMKGRELEMRDAAFAALRTPLWTVADDDGDLEMVLNAAKSSREKAADKFWKLYEDERLQEVKQGKLPEQVALDRAAYLMDAALVGGNGIRSWSDVRPPLAELYREAGMRELADFV 361 +F++N AG+ PP+ L L+ +L +GE+ V P + LHPL IPL++ S T LLRWPTP EG +PVV+ GL L++ S ++ EE+ HG+G AA P Y RG E GL+ YL KVG FPDV++ L H+ KGD+ SALVT E Y T F G+G+P + L+ + GR+ E +DAA AL++P WT+ + E V A EK K+ E+ R +E+ +GK PEQVALD+AA+L+D V GN W ++ LA Y EAG+ +A FV Sbjct: 2 GNFVRNVAGLEPPTQLQMLLDVLQAKGEQVVSPEKRQGLHPLAIPLSQNSTGTITALLRWPTPPEGMAIPVVEVHK--YGLCLLSKSVEQYLQKILVEEEVHGRGDACYSAAVASAGGDPDRVPYKRGDFENSKLAGLDVYLMKKVGLFPDVFERLALKHLEKGDEVSALVTGE-FYVTKKHFPGFGRPLVFNAELMLKI-GRKSEAKDAARIALKSPWWTLG---CEYETVAEIAGWGDEKVEYMREKMTEEGRKEELNKGKAPEQVALDQAAFLLDLGTVDGN----WDEISEKLASFYTEAGLDTIAKFV 303
BLAST of EWM29628.1 vs. NCBI_GenBank
Match: gi|1026763682|gb|OAE24650.1| (hypothetical protein AXG93_1964s1020 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 180.644 bits (457), Expect = 4.473e-50 Identity = 125/321 (38.94%), Postives = 177/321 (55.14%), Query Frame = 0 Query: 51 VTTAA----DFLQNEAGIPPPSDLSALIQLLLYRGEESVFPSENTELHPLVIPLTKSGDE--YTCLLRWPTPQEGAPVPVVKARPGLSGLKLVALSTLDLAHRLAAEED-HGQGREAEWAASLVNAYLPAEKQYVRGAVEKVGY-GLERYLFLKVGSFPDVYKFLTEFHMSKGDQASALVTAE--KAYNTFNGWGQPYMEYCRLLQGMKGRELEMRDAAFAALRTPLWTVADDDGDLEMVLNAAKSSREKAADKFWKLYEDERLQEVKQGKLPEQVALDRAAYLMDAALVGGNGIRSWSDVRPPLAELYREAGMRELADFV 361 TTAA F+QN AG+ P L +L+ +L +GE+ V P E L PL IPL+++ + T LLRWPTP EG +PVV G+ L+A S + HRL EED + G E ++ A +K Y RG G G++ YL VG FPDV++ L H+ KGD SALVT E + F G+G+P++ LL GR+LE +DAA AL++P WT+ + V A E+ ++ E+ R +++ +GK+P Q+ALD+AA+L+D A V G SW D R LA YREA M ++A+F+ Sbjct: 27 TTTAAPDHVGFVQNVAGLEPQPYLDSLLSVLQAKGEKVVSPYERKGLMPLAIPLSENPQDGSVTALLRWPTPAEGMAIPVVTCHK--HGVTLLAKSMAEYIHRLLVEEDCNSNGAEDKF---FSGAGELGQKLYRRGDFGSSGSPGVDVYLMKNVGKFPDVFERLALNHLGKGDAISALVTGEFYASRKHFPGFGRPFVFNAELLL-KAGRKLESKDAAKIALKSPWWTLGS---SYDKVAEMAGWGDEQVEFMRERVTEEGRKEDLNKGKIPAQIALDQAAFLLDLAAVDG----SWDDTREQLASFYREAEMEDVANFI 334
BLAST of EWM29628.1 vs. NCBI_GenBank
Match: gi|168049799|ref|XP_001777349.1| (predicted protein [Physcomitrella patens] >gi|162671325|gb|EDQ57879.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 176.792 bits (447), Expect = 1.018e-48 Identity = 133/364 (36.54%), Postives = 188/364 (51.65%), Query Frame = 0 Query: 16 TSYAFAPPPHPRS-------LKGHLRHSSRQNLVARHLLQDPV-----TTAADFLQNEAGIPPPSDLSALIQLLLYRGEESVFPSENTELHPLVIPLTKSGD-EYTCLLRWPTPQEGAPVPVVKARPGLSGLKLVALSTLDLAHRLAAEEDHG--QGREAEWAASLVNAYLPAEKQYVRGAVEKVGYG-LERYLFLKVGSFPDVYKFLTEFHMSKGDQASALVTAE--KAYNTFNGWGQPYMEYCRLLQGMKGRELEMRDAAFAALRTPLWTVADDDGDLEMVLNAAKSSREKAADKFWKLYEDERLQEVKQGKLPEQVALDRAAYLMDAALVGGNGIRSWSDVRPPLAELYREAGMRELADFV 361 +S A A P P S +G SR N V + + +P T + FL A + PP+ L AL+ +L +GE V P + PL IPLT + D + T LLRWPTP G VPVV+ + G+ L+A S + HR EED GR E A + ++ Y RG E L+ YL KVG FPDV++ L H+ GD SALVTAE + F G+G+P++ L+ + GR+LE +DAA ALR+P WT+ D V N A E+ +L E+ R +++ +GK EQVA+D+AA+L+D A V G +W VR LA+ Y+E G +++ F+ Sbjct: 2 SSKALAVPCPPLSGGRKNSVTRGERSRGSRNNFVCFNAISNPSAALTQTEHSTFLTEVAALEPPASLQALMNVLQAKGERVVSPYNRKGIIPLAIPLTATEDGDMTALLRWPTPASGMDVPVVRVKS--FGVTLLAKSPEEYIHRALVEEDVAGCSGRICESAGEVGSSL------YQRGNFEASKLSSLDVYLMKKVGLFPDVFERLAMRHVENGDDISALVTAEYYASKKHFPGFGRPFVFNAELMLKV-GRKLEAKDAARCALRSPWWTLGSWYAD---VANIAGWGEEQIEFMRERLTEEGRREDLLKGKSLEQVAVDQAAFLLDLAAVEG----TWDAVREQLADYYKEGGFDDISRFI 349
BLAST of EWM29628.1 vs. NCBI_GenBank
Match: gi|1147607242|ref|XP_020107614.1| (uncharacterized protein LOC109723592 [Ananas comosus]) HSP 1 Score: 173.711 bits (439), Expect = 1.898e-47 Identity = 118/311 (37.94%), Postives = 170/311 (54.66%), Query Frame = 0 Query: 57 FLQNEAGIPPPSDLSALIQLLLYRGEESVFPSENTELHPLVIPLTKS-GDEYTCLLRWPTPQEGAPVPVVKARPGLSGLKLVALSTLDLAHRLAAEED---HGQGREAEWAASLVNAYLPAEKQYVRGAVEKVGYG-LERYLFLKVGSFPDVYKFLTEFHMSKGDQASALVTAE-KAYNTFNGWGQPYMEYCRLLQGMKGRELEMRDAAFAALRTPLWTVADDDGDLEMVLNAAKSSREKAADKFWKLYEDERLQEVKQGKLPEQVALDRAAYLMDAALVGGNGIRSWSDVRPPLAELYREAGMRELADFV 361 F+++ A PP L L+ +L RG+ + P L PLVIPL++S T LLRWPT G +PVV+ R +GL L+A + HR+ E D G+ + W AS +K Y RG E+ L+ Y+ KVG FPDV + H+ KGD SALVT E N F G+G+P++ Y +L + GR+LE +DAA AL++P WT+ D+ V E +K + E+ + +++K+GK PEQVALD AA+L+D A + G +W +V +AE YREAG+ ++A FV Sbjct: 52 FIKDIAATKPPEHLHCLLNMLQARGDAIISPGAREGLIPLVIPLSESPSGTLTSLLRWPTAPPGMEMPVVQVRK--NGLWLLAKNVDQYIHRILVEADASNFGESSDELWNASAE----AGKKLYNRGDFEESQVADLDIYILKKVGLFPDVIERKVARHLDKGDHVSALVTGEFYTRNQFPGFGRPFVHYAEILLKI-GRKLEAKDAARGALKSPWWTLGRRYRDIAEVAQWEDEQIEFIKEK---VTEEGKQEDLKKGKAPEQVALDEAAFLLDLASIEG----TWDEVVDRIAECYREAGLHDIARFV 348
BLAST of EWM29628.1 vs. NCBI_GenBank
Match: gi|1035965780|gb|OAY86017.1| (hypothetical protein ACMD2_09177 [Ananas comosus]) HSP 1 Score: 172.94 bits (437), Expect = 3.123e-47 Identity = 117/311 (37.62%), Postives = 169/311 (54.34%), Query Frame = 0 Query: 57 FLQNEAGIPPPSDLSALIQLLLYRGEESVFPSENTELHPLVIPLTKS-GDEYTCLLRWPTPQEGAPVPVVKARPGLSGLKLVALSTLDLAHRLAAEED---HGQGREAEWAASLVNAYLPAEKQYVRGAVEKVGYG-LERYLFLKVGSFPDVYKFLTEFHMSKGDQASALVTAE-KAYNTFNGWGQPYMEYCRLLQGMKGRELEMRDAAFAALRTPLWTVADDDGDLEMVLNAAKSSREKAADKFWKLYEDERLQEVKQGKLPEQVALDRAAYLMDAALVGGNGIRSWSDVRPPLAELYREAGMRELADFV 361 F+++ A PP L L+ +L RG+ + P L PLVIPL++S T LLRWPT G +PVV+ R GL L+A + HR+ E D G+ + W AS +K Y RG E+ L+ Y+ KVG FPDV + H+ KGD SALVT E N F G+G+P++ Y +L + GR+LE +DAA AL++P WT+ D+ + E +K + E+ + +++K+GK PEQVALD AA+L+D A + G +W +V +AE YREAG+ ++A FV Sbjct: 52 FVKDIAATKPPEHLHCLLNMLQARGDAIISPGAREGLIPLVIPLSESPSGTLTSLLRWPTAPPGMEMPVVQVRK--HGLWLLAKNVDQYIHRILVEADASNFGESSDELWNASAE----AGKKLYNRGDFEESQVADLDVYILKKVGLFPDVIERKVARHLDKGDHVSALVTGEFYTRNQFPGFGRPFVHYAEILLKI-GRKLEAKDAARGALKSPWWTIGRRYQDVAEIAQWEDEQIEFIKEK---VTEEGKQEDLKKGKAPEQVALDEAAFLLDLASIEG----TWDEVVDRIAECYREAGLHDIARFV 348 The following BLAST results are available for this feature:
BLAST of EWM29628.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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