rna1042, rna1042 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1042
Unique Name	rna1042
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3186
Alignment location	CM002456.1:1031216..1032743 -

Link to JBrowse

Properties


Property Name	Value
Product	cyclin delta-3
Orig transcript id	gnl\|cribi\|Naga_100050g16.6851.mrna
Orig protein id	gnl\|cribi\|Naga_100050g16.6851
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1031216..1032743 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100050g16	gene1004	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29628.1	cds1041	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1042	rna1042-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1031216..1032743-
coding sequence from alignment at CM002456.1:1031216..1032743-

mRNA sequence

>rna1042 ID=rna1042|Name=rna1042|organism=Nannochloropsis gaditana|type=mRNA|length=3186bp
TGCTTGGGTTTGGGTTTTTGGTCGCTGTGCTTCTGTTCTATCTACATGTA
GTTTACATCCTGATCAACGTAATAAACCATCTGAACAGATCAAAGCCGCA
TCTACACACGAAGTAGGTGGATTTGTTTCGTGAGACACGTATCGTTATTC
GCCGCCACATTTTTCTGAAGTAGGTGGATACTTTGCCTCGTTTTACCAAA
GCTAAGCATGATGAAAACCACTGCTGCTCCTGAAAGCACACAATGTGTCG
CTGCAGCTATCGTCAACGTGACGTCAGAGACCAGCTCAAAACCTTCCAGT
GAGACGAGTCTTCCACCGCAGCCGTCCTTGTCTTCCGAGGCGGGCATCGT
CGCCACATCTAAGCATATGCTACGCGCCACCCCCGAAGAACGGGCAGTGT
CCTACTCATGTATGCAGAGTAGCGAGCGTATTGGAGGTCAGGTCGGCTCC
CCTGCATCTTCTGGAGGCCTGAATCTTGGAAAAAGGCGGATCGCCCAGTC
GGAGACCTCTACGTTCCAGAGTCCACGCCACCTCAAGCACCAGGTCTCGT
CCTCGTCATACCTCCCGCAGCCGAGGACAGCTCGCAAGAATAAGTCTGCG
CAACTGCTCGATTTCCTTCGAGATGGCATCAAAACTCAGCAGCATTCCTG
CCAAGCGCTGGGAATGGCCCGGGAACATGCCATTCTGGTCCTTCAACGCT
GGTTCCGAAACCTACGAGAGCATTGGCGGCTGGTGAAACAGGTCCAAGAA
GCGACCAGCCAGTCGTTATTGCCCTTGTTGGAGGCTGCGGAGGCTTCAAG
AGCGGGCTCGTGGGCGTCGGAGTGGGAGGCGATGTGCCGGCAGGGTAGCC
TCGAGTTTCATGCGTGCCACATGCTGCAGGGGCTGGGCTTCGCCCGCGAA
GGGCAGGCAGCGGACAAGTCGCTTACACATCCCATGACCTTACTATCTGC
ATTACTGATATCTGTGCACCCTGAGGCTATCATGACTGCTTCGCCTGTCA
GGAGCAAGCGCCGACGCCGAGAGCACGAGCGACGAGGGATCGCTCTTGTC
CAGGCGGCGTCGCGGGTGCACGAGACTTTGCTGGCATTGTACCACTGCCT
GCATCAAGCGAAGATGCCGCGATGGGTAATGCTGCGAGCGGTGGTTCAGG
TCCGTAAGGCCTTCCGCCTCTACGTCGTCCAACGAGTGCGATACCAAGGA
GTGTCAGACGCGGAGGCGGCCCGCTTGGTTCGACGCGTCACACACGCCGC
GGTCGGTGTTTTCAAAGCAATGCACCGTAGTCAGCAAAAGTCCCAAGTCG
ATGCGGCGCAAGCGATTGAGTGTGCGGAGGCTATCATAGAGGGCGAGGCT
CGGTTGCGACACCTGGAAGCCGCCCTGCAGCAATTGGTGGGGCAGAGGGA
CACAGCGCGTCGCATGGATATGGCGCGACAAGTTGCAGAGGAAGGAAAGC
AGCGGGACGGGAAGATACACGGACGAAGCGAGTTAAAGCCCCTGGCAAGC
GACCAAGATGAGACACTGATGAGCATGGACTCGGAGCCCGAGGGGGAATT
GCACGCCTCCGGCGACACCCAAACTGACACGATTTTTTCAAATGAGTGGC
TCGTCCACGAGATCTGCGTCTTGCCCAAGTCTCGCTTCTTGCAAGTGTCA
ATGGAAGATGCGTCTCAGCCACTTACCTGCGGCAATAAGCCAAGCCAGGG
AGACACACAGGCGTACTGGGAGACAGTCACTCAAACACTCTTGATGGGTG
ATTTTTCGCCGCTCTTGGTGCTGGTGCAGGAGCTGGCAGACCGCTTGATT
TCGATGACTCCGTCCCGCGCGGACCTCAGGGACGAGATCCTCGGGTCCTT
GGACGTCGCCCTTCTCAAGCAGGTGCTCAGCAAGGACTTGCTGGACTCGC
AGCTCCTCTTCTCCATCCTTCGATTCACGGGACGACGAATCCTGTGCCTG
GAGGCGCCTGCCCGCAACGCATCCACAGAAAGGTGGCTGGTCCGCTTGAA
AGAGCTGGAAGATCGGGTGTTGCAGCAGGCGGGGGGTCCGTGTGTCAGGC
TCTCTCTGCAGGACAGTACGGTCTCGAAGCAGTGGGTCCCCTCTATCAGC
CCCCTCTTCGAGTTCCTTTTGGAAAAAGTGGACCAAATCCACGTCGACAT
CTTCAATTCCCATATCCGCCGGGCGACGCCGCATTGCCGGGCCCACGGCC
CTTCCTTCGAACGCTCCCAATTTGAGGAGCGCCTGGCTCAGGGGCTCACG
TCCGTGGACAGGGTGCTGTCCTGGCTCCGAGGGGTGGTAGCCTCCGCGTG
GTGCCAGGAGCAGTCCATGCCCGTCTCGAGTCTTCGACACGGTGACCAAC
GCGTGGCCCTCTTGGAGGGCGTGCGACAGCAAAGCGGGGAGGCGATGCGG
ACACTGCTGCGACGGGCGTACGCCTCTCTGTTGGCAGACTCGTCCCGTCA
AGGCCGGCCCGTGTCGGTGTTTTCGGAGGACGATCTTCCCGAGACACTGG
CCATAGACGCTCAGCGACTGGGCTTGGCACGGCATGCCCTGTGGTGCGTG
GCCAGCGCAGGCACCGTGGTTGCGTACCTCGGACAGGCTCTGGGTCGGCA
GCTGCGGGCGGAGGAACGTCAGGTGGTGGTGCAGGAGCTGATGGTGCTGT
TGCCGGAGGCTGATGTGGAGGTGGAGGACATCGGCCTGCACGTTGGGCAC
ATCGCGAGTACCAGGCTGGGGATGACAGGGGCGGGGGAGAGGAAGATGAT
GGAGGAGCGCGTGAGACGCTTGCTGCAGGAAGGACGCTGCCCGGTGTTCC
AACTGTTGTATCAACGCGCGGTGGACGTGGTGCACGCGGTCCTGGAGCGA
GAGGAGTCGACAACGGAGGATGAGTCCGGGCGAGTGGCGCACCTCTGCCA
GCAACAGGGGCTGACGGGGATGGAGAGCCGGATTTTGAAGATATGTGATG
TCATGCTGCTCGTCACGCGCCACAACGAGGCGTGCTTCCTCTCCCTGTAC
CAGAAACTGGTGTCCGATGCGCTCAGGAGCGAGTGATGTACACATTCGAT
AGGCAAATTCGGTTTTCAAAAAAGTAGAACAGGATGTACATGGAAAGCCA
ACTGTTTAAAATGCGTTTCTGAAAGCATGTGACCAAATGGTCGTTGATCT
TTTTCACGTGAAACGAATAAGAGACATACTCCTATC

protein sequence of rna1042

>rna1042-protein ID=rna1042-protein|Name=rna1042|organism=Nannochloropsis gaditana|type=polypeptide|length=363bp
MPRVLLAFLALLGSSTSYAFAPPPHPRSLKGHLRHSSRQNLVARHLLQDP
VTTAADFLQNEAGIPPPSDLSALIQLLLYRGEESVFPSENTELHPLVIPL
TKSGDEYTCLLRWPTPQEGAPVPVVKARPGLSGLKLVALSTLDLAHRLAA
EEDHGQGREAEWAASLVNAYLPAEKQYVRGAVEKVGYGLERYLFLKVGSF
PDVYKFLTEFHMSKGDQASALVTAEKAYNTFNGWGQPYMEYCRLLQGMKG
RELEMRDAAFAALRTPLWTVADDDGDLEMVLNAAKSSREKAADKFWKLYE
DERLQEVKQGKLPEQVALDRAAYLMDAALVGGNGIRSWSDVRPPLAELYR
EAGMRELADFVER

mRNA from alignment at CM002456.1:1031216..1032743-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1042 ID=rna1042|Name=rna1042|organism=Nannochloropsis gaditana|type=mRNA|length=1528bp|location=Sequence derived from alignment at CM002456.1:1031216..1032743- (Nannochloropsis gaditana)
CCTGCCGCCAAAAAGAGGCGACACAAATCGCTCCAAGGGGCATCCCACGG
GCCCAAATAAGCCCTGGATTCCTCGCATTCCCAAACAAATGCGATCTACG
CGCTGATAGCTATGCTAAATGCTCCGACAGTGTCCATGTTGCTGACCTAT
TCACCCTTTGCAAGCACATCGTAGGCCGGACGCCGTTATCGTCCTCCTTG
TCAGCGTCTCACGCCCCCCATCACGAACCCTCCTTCGCGACGATAGGGCT
TTCCATCTTCATGCCGCGCGTTCTCCTTGCCTTTCTGGCACTTTTAGGCT
CGTCCACGTCCTATGCCTTCGCCCCCCCCCCCCATCCTCGATCTTTAAAG
GGTCATCTCAGACACTCCTCCCGTCAAAACCTCGTGGCGAGGCACCTCCT
ACAAGACCCCGTCACGACCGCCGCTGACTTCCTACAAAACGAAGCCGGAA
TTCCTCCTCCCTCAGATCTATCAGCTCTCATTCAGTTGCTCCTTTACCGT
GGAGAGGAGTCCGTTTTCCCGTCAGAGAACACCGAACTGCACCCTTTAGT
GATTCCACTGACTAAGTCAGGGGATGAATACACATGCCTCCTCCGATGGC
CGACTCCACAGGAGGGCGCGCCCGTGCCTGTGGTGAAAGCACGCCCGGGA
TTAAGCGGCCTGAAACTGGTGGCGCTGAGCACGCTTGACCTCGCTCACCG
GCTAGCCGCGGAGGAAGACCACGGCCAAGGGCGGGAGGCGGAGTGGGCCG
CCAGCCTGGTGAATGCCTACCTCCCCGCCGAGAAGCAGTACGTGCGTGGG
GCCGTCGAGAAAGTTGGCTACGGGCTGGAACGGTACCTGTTCCTCAAAGT
GGGAAGTTTCCCGGACGTATACAAGTTTTTGACCGAATTCCACATGAGCA
AGGGCGACCAAGCCAGCGCGCTTGTCACGGCGGAGAAAGCCTACAACACG
TTCAACGGCTGGGGACAACCCTACATGGAATACTGCAGGCTGCTCCAAGG
CATGAAAGGGCGGGAGTTGGAGATGAGAGACGCAGCCTTCGCGGCGTTGC
GGACACCGCTGTGGACGGTTGCTGACGACGACGGCGATTTGGAAATGGTT
TTGAATGCGGCAAAATCCAGCCGTGAGAAGGCCGCAGATAAATTCTGGAA
GCTCTACGAAGACGAACGGCTACAGGAGGTAAAGCAGGGGAAGTTGCCGG
AGCAGGTGGCACTGGACAGAGCAGCGTACCTGATGGACGCGGCCCTGGTA
GGTGGGAACGGGATTCGGTCTTGGTCCGACGTGCGACCGCCGCTGGCGGA
GTTGTACAGAGAAGCGGGCATGAGGGAGCTGGCTGATTTCGTAGAGAGAT
GAGTGGAGGGGTAGTTTGGGCAGTGGCCTTCATGGAAAGAATCAAAAATG
TGCAAGAATTCAGTGGAGAGTAAAAAGCGGTACCGAACCCGTCGACAAGG
ATAGGAGTATGTCTCTTATTCGTTTCACGTGAAAAAGATCAACGACCATT
TGGTCACATGCTTTCAGAAACGCATTTT

Coding sequence (CDS) from alignment at CM002456.1:1031216..1032743-

>rna1042 ID=rna1042|Name=rna1042|organism=Nannochloropsis gaditana|type=CDS|length=1092bp|location=Sequence derived from alignment at CM002456.1:1031216..1032743- (Nannochloropsis gaditana)
ATGCCGCGCGTTCTCCTTGCCTTTCTGGCACTTTTAGGCTCGTCCACGTC
CTATGCCTTCGCCCCCCCCCCCCATCCTCGATCTTTAAAGGGTCATCTCA
GACACTCCTCCCGTCAAAACCTCGTGGCGAGGCACCTCCTACAAGACCCC
GTCACGACCGCCGCTGACTTCCTACAAAACGAAGCCGGAATTCCTCCTCC
CTCAGATCTATCAGCTCTCATTCAGTTGCTCCTTTACCGTGGAGAGGAGT
CCGTTTTCCCGTCAGAGAACACCGAACTGCACCCTTTAGTGATTCCACTG
ACTAAGTCAGGGGATGAATACACATGCCTCCTCCGATGGCCGACTCCACA
GGAGGGCGCGCCCGTGCCTGTGGTGAAAGCACGCCCGGGATTAAGCGGCC
TGAAACTGGTGGCGCTGAGCACGCTTGACCTCGCTCACCGGCTAGCCGCG
GAGGAAGACCACGGCCAAGGGCGGGAGGCGGAGTGGGCCGCCAGCCTGGT
GAATGCCTACCTCCCCGCCGAGAAGCAGTACGTGCGTGGGGCCGTCGAGA
AAGTTGGCTACGGGCTGGAACGGTACCTGTTCCTCAAAGTGGGAAGTTTC
CCGGACGTATACAAGTTTTTGACCGAATTCCACATGAGCAAGGGCGACCA
AGCCAGCGCGCTTGTCACGGCGGAGAAAGCCTACAACACGTTCAACGGCT
GGGGACAACCCTACATGGAATACTGCAGGCTGCTCCAAGGCATGAAAGGG
CGGGAGTTGGAGATGAGAGACGCAGCCTTCGCGGCGTTGCGGACACCGCT
GTGGACGGTTGCTGACGACGACGGCGATTTGGAAATGGTTTTGAATGCGG
CAAAATCCAGCCGTGAGAAGGCCGCAGATAAATTCTGGAAGCTCTACGAA
GACGAACGGCTACAGGAGGTAAAGCAGGGGAAGTTGCCGGAGCAGGTGGC
ACTGGACAGAGCAGCGTACCTGATGGACGCGGCCCTGGTAGGTGGGAACG
GGATTCGGTCTTGGTCCGACGTGCGACCGCCGCTGGCGGAGTTGTACAGA
GAAGCGGGCATGAGGGAGCTGGCTGATTTCGTAGAGAGATGA

Synonyms

Publications