EWM29642.1, cds1035 (CDS) Nannochloropsis gaditana

Overview
NameEWM29642.1
Unique Namecds1035
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1014947..1017118 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29642.1
Productretinal pigment epithelial membrane protein
Orig transcript idgnl|cribi|Naga_100050g23.6865.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1014947..1017118 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR004294Carotenoid_Oase
Homology
BLAST of EWM29642.1 vs. NCBI_GenBank
Match: gi|585112214|gb|EWM29642.1| (retinal pigment epithelial membrane protein [Nannochloropsis gaditana])

HSP 1 Score: 1486.09 bits (3846), Expect = 0.000e+0
Identity = 723/723 (100.00%), Postives = 723/723 (100.00%), Query Frame = 0
Query:    1 MATVKTDACIILLAFLCPYVVRSFPGSQPQPPRSTTSIPTSPFAPTKPSCAPLPPHESIFNSDLSPTSKLPGNFDLDTWASLFASLDEDEAVDYWIEDWEGVIPEDLHGTFLTVGPSKYERGGVPIKCWLEGDGAMTAISFNKGKVHVKARFIETKAYLEEKVEDRFLYRGQFGTMKTGRHGWSAFKDSFLKIRLPPINAFDMKFKNPSNTKPLYWGGRLLSTFETALPHELDTQTLETKGEFDFGGLMRPGEAITSADPVLDAILQKKSGHAFTAHPRIDKATKRLLGWSWKTLLPKHFGVPDPRLWRSAKGKKSRTESRGAGLEVTFYEWDEAFDLPFPPVTIRVSDCPSPPHDWVVTPNYYVWMQSAFRLNLLPCVLGLKGPGECMVPVKGEEARAVVHLVPRPGGRHAGKPPVAIEMEPYFMTHWSHAFDVEGDGEEGNKVVGFAAGWDKSLFSPANDDGHMFGHTYRGAPDFSRLPIIRYYRLDVDLERKRASFVAVPSLAKTFLDFPKVHPRFEAEGAPRHVWAMACNDRGVSSPPQGYVHLDLGTGLVESWHAPSSAAALAAARQAPSSSLPSMFASPPLSLSAVDMNRDDTGGELSVEDRTKHIVVGEGVLAPRAACEPGKGDEQEELDSYWMGVEFNALTGRRSLCIFNAADIAAGPLCKLHLQHSLPWGIHSEWAPGLLVAVPEEREQTGNVIRNKDGQKEVEGKEFSKGVAK 723
            MATVKTDACIILLAFLCPYVVRSFPGSQPQPPRSTTSIPTSPFAPTKPSCAPLPPHESIFNSDLSPTSKLPGNFDLDTWASLFASLDEDEAVDYWIEDWEGVIPEDLHGTFLTVGPSKYERGGVPIKCWLEGDGAMTAISFNKGKVHVKARFIETKAYLEEKVEDRFLYRGQFGTMKTGRHGWSAFKDSFLKIRLPPINAFDMKFKNPSNTKPLYWGGRLLSTFETALPHELDTQTLETKGEFDFGGLMRPGEAITSADPVLDAILQKKSGHAFTAHPRIDKATKRLLGWSWKTLLPKHFGVPDPRLWRSAKGKKSRTESRGAGLEVTFYEWDEAFDLPFPPVTIRVSDCPSPPHDWVVTPNYYVWMQSAFRLNLLPCVLGLKGPGECMVPVKGEEARAVVHLVPRPGGRHAGKPPVAIEMEPYFMTHWSHAFDVEGDGEEGNKVVGFAAGWDKSLFSPANDDGHMFGHTYRGAPDFSRLPIIRYYRLDVDLERKRASFVAVPSLAKTFLDFPKVHPRFEAEGAPRHVWAMACNDRGVSSPPQGYVHLDLGTGLVESWHAPSSAAALAAARQAPSSSLPSMFASPPLSLSAVDMNRDDTGGELSVEDRTKHIVVGEGVLAPRAACEPGKGDEQEELDSYWMGVEFNALTGRRSLCIFNAADIAAGPLCKLHLQHSLPWGIHSEWAPGLLVAVPEEREQTGNVIRNKDGQKEVEGKEFSKGVAK
Sbjct:    1 MATVKTDACIILLAFLCPYVVRSFPGSQPQPPRSTTSIPTSPFAPTKPSCAPLPPHESIFNSDLSPTSKLPGNFDLDTWASLFASLDEDEAVDYWIEDWEGVIPEDLHGTFLTVGPSKYERGGVPIKCWLEGDGAMTAISFNKGKVHVKARFIETKAYLEEKVEDRFLYRGQFGTMKTGRHGWSAFKDSFLKIRLPPINAFDMKFKNPSNTKPLYWGGRLLSTFETALPHELDTQTLETKGEFDFGGLMRPGEAITSADPVLDAILQKKSGHAFTAHPRIDKATKRLLGWSWKTLLPKHFGVPDPRLWRSAKGKKSRTESRGAGLEVTFYEWDEAFDLPFPPVTIRVSDCPSPPHDWVVTPNYYVWMQSAFRLNLLPCVLGLKGPGECMVPVKGEEARAVVHLVPRPGGRHAGKPPVAIEMEPYFMTHWSHAFDVEGDGEEGNKVVGFAAGWDKSLFSPANDDGHMFGHTYRGAPDFSRLPIIRYYRLDVDLERKRASFVAVPSLAKTFLDFPKVHPRFEAEGAPRHVWAMACNDRGVSSPPQGYVHLDLGTGLVESWHAPSSAAALAAARQAPSSSLPSMFASPPLSLSAVDMNRDDTGGELSVEDRTKHIVVGEGVLAPRAACEPGKGDEQEELDSYWMGVEFNALTGRRSLCIFNAADIAAGPLCKLHLQHSLPWGIHSEWAPGLLVAVPEEREQTGNVIRNKDGQKEVEGKEFSKGVAK 723          
BLAST of EWM29642.1 vs. NCBI_GenBank
Match: gi|553193240|ref|XP_005855740.1| (retinal pigment epithelial membrane protein, partial [Nannochloropsis gaditana CCMP526] >gi|553195886|ref|XP_005856225.1| retinal pigment epithelial membrane protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292832|gb|EKU20134.1| retinal pigment epithelial membrane protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293322|gb|EKU20622.1| retinal pigment epithelial membrane protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 303.908 bits (777), Expect = 1.411e-96
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0
Query:  271 GHAFTAHPRIDKATKRLLGWSWKTLLPKHFGVPDPRLWRSAKGKKSRTESRGAGLEVTFYEWDEAFDLPFPPVTIRVSDCPSPPHDWVVTPNYYVWMQSAFRLNLLPCVLGLKGPGECMVPVKGEEARAVVHLVPRPGGRHAGKP 415
            GHAFTAHPRIDKATKRLLGWSWKTLLPKHFGVPDPRLWRSAKGKKSRTESRGAGLEVTFYEWDEAFDLPFPPVTIRVSDCPSPPHDWVVTPNYYVWMQSAFRLNLLPCVLGLKGPGECMVPVKGEEARAVVHLVPRPGGRHAGKP
Sbjct:    1 GHAFTAHPRIDKATKRLLGWSWKTLLPKHFGVPDPRLWRSAKGKKSRTESRGAGLEVTFYEWDEAFDLPFPPVTIRVSDCPSPPHDWVVTPNYYVWMQSAFRLNLLPCVLGLKGPGECMVPVKGEEARAVVHLVPRPGGRHAGKP 145          
BLAST of EWM29642.1 vs. NCBI_GenBank
Match: gi|1062968490|ref|WP_069350669.1| (lignostilbene-alpha,beta-dioxygenase [Scytonema millei] >gi|1061901172|gb|ODN57031.1| lignostilbene-alpha,beta-dioxygenase [Scytonema millei VB511283])

HSP 1 Score: 249.98 bits (637), Expect = 1.138e-70
Identity = 177/601 (29.45%), Postives = 278/601 (46.26%), Query Frame = 0
Query:   90 EAVDYWIEDWEGVIPEDL-HGTFLTVGPSKYERGGVPIKCWLEGDGAMTAISFN-KGKVHVKARFIETKAYLEEKVEDRFLYRGQFGTMKTGRHGWSAFKDSFLKIRLPPINAFDMKFKNPSNTKPLYWGGRLLSTFETALPHELDTQTLETKGEFDFGGLMRPGEAITSADPVLDAILQKKSGHAFTAHPRIDKATKRLLGWSWKTLLPKHFGVPDPRLWRSAKGKKSRTESRGAGLEVTFYEWDEAFDLPFPPVTIRVSDCPSPPHDWVVTPNYYVWMQSAFRLNLLPCVLGLKGPGECMVPVKGEEARAVVHLVPRPGGRHAGKPPVAIEMEPYFMTHWSHAFDVEGDGEEGNKVVGFAAGWDKSLFSPANDDGHMFGHTYRG-APDFSRLPIIRYYRLDVDLERKRASFVAVPSLAKTFLDFPKVHPRFEAEGAPRHVWAMACNDRGVSSPPQGYVHLDLGTGLVESWHAPSSAAALAAARQAPSSSLPSMFASPPLSLSAVDMNRDDTGGELSVEDRTKHIVVGEGVLAPRAACEPGKGDEQEELDSYWMGVEFNAL-TGRRSLCIFNAADIAAGPLCKLHLQHSLPWGIHSEWAP 686
            +   Y I + EG IPE L   T    GP  +ERG   +K +L+GDG +  ISF+ +GK +  ++FI T+ Y++E  ++ FLYR  FG  K G  G  A             N  D+  KNPSNT  + WG + LS +E  LP+ +D  TL+T G+      +     I +    L+  L      A TAHPR D    R++ W+W T +  + G P+                    L +   E+D+ +      +   +    + PHD+ +T +YY++ ++ F  ++LP +LG +GP  C+  +K ++   +VHLVPRPGG  AG  P+  E  P+F  H + A+D    G E      ++ GW      P++     F  ++ G APDF  +     ++  +D++RK+      PS     +D P ++P  E + A R+++   CN+ G SSPP GY+ LDL TG  + W                                    N D +  E             E V  PR+       +   E D Y +G+ ++ + +GR SL I +A ++A GP+C+L L H +P G+H  W+P
Sbjct:   42 QEFSYQISEIEGSIPETLLSSTLFRNGPGLFERGDTRVKHYLDGDGYLCKISFSPEGKAYFDSKFIRTEEYVQEAAQNSFLYRSTFGMQKPG--GLLA-------------NILDIHLKNPSNTNIVSWGSKFLSLYEAGLPYLIDPYTLDTIGKGALSNFLSERTPIDTGVSALNNFLN--GWKAMTAHPRFDPIQDRMVTWTWHTHV--NLGRPNE-------------------LVLDIVEYDQQWKQKAHTLHSMIGAVVN-PHDFALTQSYYIFFENQFEFDILPYLLGWEGPATCL-KLKSDKP-TLVHLVPRPGGPRAGTKPLVFETIPWFSIHQAFAYDTADGGVE-----IYSTGW------PSSGLKGNFLSSWSGYAPDFDNIAPTYLWKTTIDIQRKKIEHRVAPSTESHCIDHPHINPLRETQDA-RYIYMSYCNNIGESSPPTGYMKLDLKTGDKQYW-----------------------------------WNYDLSFTE-------------ELVFVPRS-------NAIREDDGYLLGMTYDHIHSGRSSLVIIDAKEVAKGPICRLWLNHHVPHGLHGSWSP 534          
BLAST of EWM29642.1 vs. NCBI_GenBank
Match: gi|938300997|gb|KPQ34545.1| (all-trans-8'-apo-beta-carotenal 15,15'-oxygenase [Phormidesmis priestleyi Ana])

HSP 1 Score: 246.899 bits (629), Expect = 2.346e-69
Identity = 194/652 (29.75%), Postives = 300/652 (46.01%), Query Frame = 0
Query:   52 PLPPHESIFNSD-----LSPTSKLPGNFDLDTWASLFASLDEDEAVDYWIEDWEGVIPEDLHG-TFLTVGPSKYERGGVPIKCWLEGDGAMTAISFN-KGKVHVKARFIETKAYLEEKVEDRFLYRGQFGTMKTGRHGWSAFKDSFLKIRLPPINAFDMKFKNPSNTKPLYWGGRLLSTFETALPHELDTQTLETKGEFDFGGLMRPGEAITSADPVL-----DAILQKKSG-HAFTAHPRIDKATKRLLGWSWKTLLPKHFGVPDPRLWRSAKGKKSRTESRGAGLEVTFYEWDEAFDLPFPPVTIRVSDCPSP---PHDWVVTPNYYVWMQSAFRLNLLPCVLGLKGPGECMVPVKGEEARAVVHLVPRPGGRHAGKPPVAIEMEPYFMTHWSHAFDVEGDGEEGNKVVGFAAGWDKSLFSPANDDGHMFGHTYRG-APDFSRLPIIRYYRLDVDLERKRASFVAVPSLAKTFLDFPKVHPRFEAEGAPRHVWAMACNDRGVSSPPQGYVHLDLGTGLVESWHAPSSAAALAAARQAPSSSLPSMFASPPLSLSAVDMNRDDTGGELSVEDRTKHIVVGEGVLAPRAACEPGKGDEQEELDSYWMGVEFNALTGRRSLCIFNAADIAAGPLCKLHLQHSLPWGIHSEWAP 686
            PLPP+  ++        L  + +L        WAS F S  + +A DY I + EGV+PE+L G T    GPS++ERG   +  +L+GDG +  I+F   G+V   +RF++T  Y  E   + F +R  FG  K G      F  S L          D+  KNP+NT  + WG RLL+ +E  +P+ +D  TLET G  D  G +         +PVL     + ++++  G  A TAHP +D    RL+ WSW   +    G P+                    L +   E++ A++     ++ R    P     PHD+ +TPNYYV+ ++A   +++P +LG K P +C+   K       VHL+PRP G  AG  P+ +E + +F  H + A++ + DG+   +VV +++GW      PA++ G  F  ++ G AP+F  +     ++  ++  +K       P      +  P V+P  E   A R+++   CN+ G SSPP GY+ LD  T   + W                 +  P  FA  P                               V  PRA    G+ D + E D + +GV ++ L  R SL +F+AADI AGP+C+L   H L  G+H  W+P
Sbjct:   18 PLPPNSVVWGKQGEGEALKRSQQL-------AWASAFRS--QLQAFDYEITEIEGVLPEELKGSTLFRNGPSRFERGDQRVAHYLDGDGYIAKIAFAPDGRVTFSSRFVKTAEYAWEDAANAFGFRTTFGNAKPG-----GFLASLL----------DLHLKNPANTHVVPWGSRLLALYEAGMPYRIDPYTLETLGVEDLLGQL--------VEPVLPPSRWEMMMRRSRGQQAMTAHPHVDPVRDRLVTWSWG--MAAKLGEPN-------------------TLIIELIEYNAAWE----EMSRRQYSMPGAAVNPHDFALTPNYYVFFENALSFDVMPFLLGQKSPADCL---KLLPKPTKVHLIPRPDGAMAGVGPLVLETDQWFSIHQACAYE-QLDGQPDGQVVVYSSGW------PASEGG--FLTSWGGYAPNFDAIAPTFLWQTTLNPRKKSVVHRIAPGTENCCIAHPHVNPNRETL-AVRYLYMPYCNNIGESSPPVGYLRLDTQTQQRQVW-----------------TMHPQSFAEEP-------------------------------VFVPRAG---GRADGENEDDGWLLGVTYDYLQDRSSLMLFDAADIEAGPICRLWFTHHLAHGLHGSWSP 548          
BLAST of EWM29642.1 vs. NCBI_GenBank
Match: gi|873223966|emb|CEM27487.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 226.868 bits (577), Expect = 4.829e-61
Identity = 178/649 (27.43%), Postives = 287/649 (44.22%), Query Frame = 0
Query:   68 SKLPGNFDLDTWASLFASLDEDEAVDYWIEDWEGVIPEDLHGTFLTVGPSKYERGGVPIKCWLEGDGAMTAISFNKGKVHVKARFIETKAYLEEKVEDRFLYRGQFGTMKTGRHGWSAFK-------------DSFLKIRLPPINAFDMKFKNPSNTKPLYWGGR------LLSTFETALPHELDTQTLETKGEFDFGGLMRPGEAITSADPVLDAILQKKSG---HAFTAHPRIDKATKRLLGWSWKTLLPKHFGVPDPRLWRSAKGKKSRTESRGAGLEVTFYEWD-EAFDLPFPPVTIRVSDCPSPPHDWVVTPNYYVWMQSAFRLNLLPCVLGLKGPGECMVPVKGEEARAVVHLVPRPGGRHAGKPPVAIEMEPYFMTHWSHAFDVEGDGEEGNKVVGFAAGWDKSLFSPANDDGHMFGHTYRGAPDFSRLPIIRYYRLDVDLERKRASFV---AVPSLAKTFLDFPKVHPRFEAEGAPRHVWAMACNDRG--VSSPPQGYVHLDLGTGLVESWHAPSSAAALAAARQAPSSSLPSMFASPPLSLSAVDMNRDDTGGELSVEDRTKHIVVGEGVLAPRAACEPGKGDEQEELDSYWMGVEFNALTGRRSLCIFNAADIAAGPLCKLHLQHSLPWGIHSEWAPGL 688
            +K  G+FD D WA++F +   + A  Y I   EG IP DL+GTF  +GP+ ++RG   I  + +GDG +T ISF  G+  +++R++ T  Y +E   ++FL+RG FGT +     +S  +             +   +I     NAFD + K P NT    +  +      LL+  E   P  ++   L T+G+ DF G +R  E  T+   +    L  + G    A  AHP++D  +  +  ++W+T                          RG+ ++V   EW  +   L   P T+   DC + PHDW +T +YYV    A  L+L+P ++G KGP +CM   +  +     HLVPRP G  AG  P+ +++    +      F    D + GN V+ ++  W+  +     D   ++GH+    PDF+  P I  YR+ VD+       +     P L +  +  P+ HP  EA    RH+++M C+ +G   +SPPQG V LD+ +G  ++WHA   A                 F S P S                                  A  E       +E+  + +    +   GR  + I +   +  GP+ K+ L+H +PWGIH+ + P +
Sbjct:   95 AKFDGDFDRDDWAAVFRTQRAEFA--YRIHHVEGTIPRDLNGTFWKIGPALFKRGNSTIANFNDGDGYLTGISFQDGQAWLRSRYVVTPDYRQESAAEQFLFRGCFGTRRQPNTPYSHRQRLTGLIRRLRGSSEEPSQIEHLAENAFDARLKTPPNTNVALFPQKDGNAPHLLALHEAGPPFAVEMSDLSTEGKEDFEGSVR-TEGQTAG--IFGRWLDSRMGMGAEAVNAHPKVDTESGNVAMYTWQT-----------------------QPLRGS-MKVFIREWAPDGTLLSTTPHTM--PDCCAAPHDWALTQSYYVLPDPAMCLHLMPFLMGKKGPAQCM---EYLDRPLRFHLVPRPNGPRAGTEPILVDVGRAGLPMHMAGF----DDQHGNVVI-YSEAWNDDMLEMLEDAESLYGHSDHYWPDFASFPKISLYRIVVDVRSSPPRVIEHRMTPGLERLSIAHPRPHPSREALPF-RHLYSMLCHSKGGRCASPPQGCVRLDVASGEADAWHAGRRA-----------------FTSQPAS----------------------------------ATTEGASQVPSDEMAGWLLTFVHDVEAGRPYVAILDPKAVHRGPVAKVWLEHHVPWGIHTTYVPNV 652          
BLAST of EWM29642.1 vs. NCBI_GenBank
Match: gi|499368292|ref|WP_011055870.1| (lignostilbene alpha-beta-dioxygenase [Thermosynechococcus elongatus] >gi|22297559|ref|NP_680806.1| lignostilbene-alpha,beta-dioxygenase [Thermosynechococcus elongatus BP-1] >gi|22293736|dbj|BAC07568.1| lignostilbene-alpha,beta-dioxygenase [Thermosynechococcus elongatus BP-1])

HSP 1 Score: 219.164 bits (557), Expect = 8.033e-60
Identity = 188/629 (29.89%), Postives = 271/629 (43.08%), Query Frame = 0
Query:   67 TSKLPGNFDLDTWASLFASLDEDEAVDYWIEDWEGVIPEDLHGTFLTVGPSKYERGGVPIKCWLEGDGAMTAISFNKGKVHVKARFIETKAYLEEKVEDRFLYRGQFGTMKTGRHGWSAFKDSFLKIRLPPINAFDMKFKNPSNTKPLYWGGRLLSTFETALPHELDTQTLETKGEFDFGGLMRPGEAITSADPVLDAILQKKSGHAFTAHPRIDKATKRLLGWSWKTLLPKHFGVPDPRLWRSAKGKKSRTESRGAGLEVTFYEWDEAFDLPFPPVTIRVSDCPSPP----------HDWVVTPNYYVWMQSAFRLNLLPCVLGLKGPGECMVPVKGEEARAVVHLVPRPGGRHAGKPPVAIEMEPYFMTHWSHAFDVEGDGEEGNKVVGFAAGWDKSLFSPANDDGHMFGHTYRGAPDFSRLPIIRYYRLDVDLERKRASFVAVPSLAKTFLDFPKVHPRFEAEGAP-RHVWAMACNDRGVSSPPQGYVHLDLGTGLVESWHAPSSAAALAAARQAPSSSLPSMFASPPLSLSAVDMNRDDTGGELSVEDRTKHIVVGEGVLAPRAACEPGKGDEQEELDSYWMGVEFNALTGRRSLCIFNAADIAAGPLCKLHLQHSLPWGIHSEW 684
            T  L   + +  W     SL ++   DYWIE+ EG +P DL GT    GP   ERGGVP+    +GDG + A  F KG+VH + R++ T  +LEE+  +R LYRG FGT K G  GW A             N  D + KN +NT  +YW G+LL+ +E +LPH LD  TLET G  + GGL+R  +                   AF AHPR D  T+RL+          +FGV                   G    +  YE+D                C S P          HD+ +TPNY +  Q+  + N LP +LGL+G  +C+     E  R  V L+PR GG     PP  + M P F+ H ++A++V GD      +         S F P  + G  F        +F+ LP    +R+ ++ + K   +  V        +FP VHP     G P R+ +  A +D   ++P Q     D  TG  + W                 S+ P  F S P                         IVV  G+       +  +G+E    D + + V ++A   +  L IF+AA I+AGP+ +LHL+H +P+G+H  +
Sbjct:    2 TGVLDRPYTMADWRGGTESLTQE--YDYWIEEVEGTVPTDLVGTLYRNGPGLLERGGVPLAHPFDGDGMICAFRFEKGRVHFRNRYVRTAGFLEEEKANRLLYRGVFGTQKPG--GWFA-------------NFLDTRVKNIANTHVIYWAGKLLALWEASLPHRLDPVTLETIGLDNLGGLLRERD-------------------AFAAHPRFDPQTQRLV----------NFGV-----------------QPGLNTRIRLYEFDAN------------GQCVSQPTFQIPGFAFIHDFALTPNYAIVFQNPVQFNPLPYLLGLRGAAQCLQFNAQEPTR--VWLLPRRGG-----PPQMLTMPPCFVFHHANAYEV-GDEIHVESIA-------YSHF-PNLEPGMDFREV-----NFAALPASLLWRIQLNPKTKAVDWQVVSDRP---CEFPVVHP--AKVGQPYRYTYLAAGHDPKTNAPLQALWRCDRQTGEEQFW-----------------SAAPRGFVSEP-------------------------IVVPRGLQKGDFLWQGAQGEE----DGWLLQVVYDASCHKSQLLIFDAAAISAGPVARLHLKHHIPYGLHGSF 483          
BLAST of EWM29642.1 vs. NCBI_GenBank
Match: gi|493499793|ref|WP_006454316.1| (Retinal pigment epithelial membrane protein [Synechococcus sp. PCC 7335] >gi|196189605|gb|EDX84569.1| Retinal pigment epithelial membrane protein [Synechococcus sp. PCC 7335])

HSP 1 Score: 219.164 bits (557), Expect = 1.911e-59
Identity = 177/646 (27.40%), Postives = 277/646 (42.88%), Query Frame = 0
Query:   51 APLPPHESIFNSDLSPTSKLPGNFDLDTWASLFASLDEDEAVDYWIEDWEGVIPEDLHG-TFLTVGPSKYERGGVPIKCWLEGDGAMTAISFNK-GKVHVKARFIETKAYLEEKVEDRFLYRGQFGTMKTGRHGWSAFKDSFLKIRLPPINAFDMKFKNPSNTKPLYWGGRLLSTFETALPHELDTQTLETKGEFDFGGLMRPGEAITSADPVLDAILQKKSGHAFTAHPRIDKATKRLLGWSWKTLLPKHFGVPDPRLWRSAKGKKSRTESRGAGLEVTFYEWDEAFDLPFPPVTIRVSDCPSP---PHDWVVTPNYYVWMQSAFRLNLLPCVLGLKGPGECM----VPVKGEEARAVVHLVPRPGGRHAGKPPVAIEMEPYFMTHWSHAFDVEGDGEEGNKVVGFAAGWDKSLFSPANDDGHMFGHTYRG-APDFSRLPIIRYYRLDVDLERKRASFVAVPSLAKTFLDFPKVHPRFEAEGAPRHVWAMA-CNDRGVSSPPQGYVHLDLGTGLVESWHAPSSAAALAAARQAPSSSLPSMFASPPLSLSAVDMNRDDTGGELSVEDRTKHIVVGEGVLAPRAACEPGKGDEQEELDSYWMGVEFNALTGRRSLCIFNAADIAAGPLCKLHLQHSLPWGIHSEWA 685
            APLPP+   +        K   +     W + F S  + +  +Y I   EG IP++L G T    GPS++ERG   +  +L+GDG +  I+F + GKVH  +RFI T  +  E+  + F +R  FG                  ++ P     D+  KNP+NT  + WG +LL+ +E   P+ +D  TLET G     G +       S    L A+L+++   A TAHP ID A+ RL+ W+W   +  H                     +   L +   E+D  +      +++   + PS    PHD+ +TPNYY++ Q+AF L +L  +LG K P +C+    +P K       VHL+PRP G  AG  P+ ++ E +F  H + A++   DG     V  +++GW      PA   G  F  ++ G APDF  +     Y   +    +  +    P+L    +  P  H   + E  P     MA CN+ G SSPP GY+  +  T  +E+W+A                  P  FA  P+ +     N+D                                       D + + + ++ L  R +L IF+   ++ GP+C+L L H L  G+H  W 
Sbjct:    4 APLPPNSIAWGKQ--GEGKALKDVQQAAWNAAFQS--QLQEFEYEITHIEGEIPDELRGSTLFRNGPSRFERGQQRVSHYLDGDGYLAKITFTREGKVHFTSRFISTAEHKLEETTNAFQFRTTFGN----------------PLKHPLSLLLDLHLKNPANTHIVAWGDKLLALYEAGAPYRIDPHTLETLGLETLSGELNSNPLPRSR---LGALLRRRGQQAMTAHPHIDPASNRLITWTWGIQVNLH---------------------KPNSLNLEIIEYDSNWQ----SLSLTTHEMPSAVVNPHDFALTPNYYIFFQNAFSLRILDYLLGRKSPADCLTLKPIPTK-------VHLIPRPDGSKAGNAPLVLDTEQWFSIHQACAWE-NADG----SVEIYSSGW------PATTGG--FLTSWSGYAPDFDAIAPTFLYHTQIYPSTQTVTHRITPALENYCIAHP--HTNTQTETQPSQYLYMAYCNNIGQSSPPTGYLKYNTQTQEIETWNAH-----------------PLNFAEEPVFVPHSQGNKD---------------------------------------DGWLLCLMYDHLRDRSALNIFDTTKLSTGPICRLWLTHPLAHGLHGSWV 523          
BLAST of EWM29642.1 vs. NCBI_GenBank
Match: gi|1111738702|gb|OJJ25133.1| (Apocarotenoid-15,15'-oxygenase [Roseofilum reptotaenium AO1-A])

HSP 1 Score: 216.853 bits (551), Expect = 6.365e-59
Identity = 173/624 (27.72%), Postives = 272/624 (43.59%), Query Frame = 0
Query:   71 PGNFDLDTWASLFASLDEDEAVDYWIEDWEGVIPEDLHGTFLTVGPSKYERGGVPIKCWLEGDGAMTAISFNKGKVHVKARFIETKAYLEEKVEDRFLYRGQFGTMKTGRHGWSAFKDSFLKIRLPPINAFDMKFKNPSNTKPLYWGGRLLSTFETALPHELDTQTLETKGEFDFGGLMRPGEAITSADPVLDAILQKKSGHAFTAHPRIDKATKRLLGWSWKTLLPKHFGVPDPRLWRSAKGKKSRTESRGAGLEVTFYEWDEAFDLPFPPVTIRVSDCPS--PPHDWVVTPNYYVWMQSAFRLNLLPCVLGLKGPGECMVPVKGEEARAVVHLVPRPGGRHAGKPPVAIEMEPYFMTHWSHAFDVEGDGEEGNKVVGFAAGWDKSLFSPANDDGHMFGHTYRGAPDFSRLPIIRYYRLDVDLERKRASFVAVPSLAKTFLDFPKVHPRFEAEGAPRHVWAMACNDRGVSSPPQGYVHLDLGTGLVESWHAPSSAAALAAARQAPSSSLPSMFASPPLSLSAVDMNRDDTGGELSVEDRTKHIVVGEGVLAPRAACEPGKGDEQEELDSYWMGVEFNALTGRRSLCIFNAADIAAGPLCKLHLQHSLPWGIHSEWAPGLLVAV 692
            P ++D   W+  + S  +    DYWIED EG IP+ L GT L  GP   + GG PI    +GDG + AI+F  G+ H + R++ T+ Y+EE+   + LYRG FGT K G  GW A             N FD++ KN +NT  +YW  RLL+ +E   PH LD QTLET                     + D     K+G AF+AHP+I                       DP   RS     + +   G   ++T +E    F+L   P+     + P     HD+ +TP YY+++Q+    N  P + GL GPGEC+   +    +A V  +PR G +        IE++  F+ H  +AF      EE N+++  + G++     P  + G  F +T     DF+RL   + +R  +DL +KR     + S      +FP++HP++  + + R+V+  A +    S+P QG +  D  +G  + W                 S+ P  F S P+ +     + +D G  +S                                      V + +   R  + I +A ++   P+ +LHLQH +P+G+H  W P   + +
Sbjct:    8 PLSYDRQQWSQGYQS--QPHEYDYWIEDIEGEIPQQLEGTLLRNGPGLLDIGGYPIAHPFDGDGMVNAIAFKGGRAHYRNRYVRTQGYIEEQKAGKPLYRGVFGTQKPG--GWFA-------------NLFDLRLKNLANTHIIYWADRLLALWEGGQPHRLDPQTLETLE-------------------LDDLDGLLKTGQAFSAHPKI-----------------------DPYGDRSNPCLVNFSIQPGLNSQLTIWE----FNLKGQPLRQSTHEIPGFCFIHDFAITPQYYLFLQNPVSFNPFPFLFGLLGPGECIDFDRHNVTKAWV--IPRQGNQRMK----MIEIDSGFVFHHVNAF------EEKNQIILDSIGYES---FPEVEPGSDFRYT-----DFNRLAPSQLWRFRLDLTKKRGDRQLLESRC---CEFPQIHPQWVGQ-SHRYVYLGAAHQNRGSAPLQGVLKRDNQSGETQFW-----------------SAAPHGFVSEPIFIPQPGSDVEDKGWIIS--------------------------------------VVYQSQNHRSDIIILDAENLEQEPIARLHLQHHIPYGLHGSWIPNQQLGI 489          
BLAST of EWM29642.1 vs. NCBI_GenBank
Match: gi|654353155|ref|WP_027846095.1| (Apocarotenoid-15,15'-oxygenase [Mastigocoleus testarum] >gi|959129584|gb|KST64848.1| Apocarotenoid-15,15'-oxygenase [Mastigocoleus testarum BC008])

HSP 1 Score: 214.157 bits (544), Expect = 9.631e-58
Identity = 178/643 (27.68%), Postives = 281/643 (43.70%), Query Frame = 0
Query:   57 ESIFNSDLSPTS-KLPGNFDLDTWASLFASLDEDEAVDYWIEDWEGVIPEDLHGTFLTVGPSKYERGGVPIKCWLEGDGAMTAISFNKGKVHVKARFIETKAYLEEKVEDRFLYRGQFGTMKTGRHGWSAFKDSFLKIRLPPINAFDMKFKNPSNTKPLYWGGRLLSTFETALPHELDTQTLETKGEFDFGGLMRPGEAITSADPVLDAILQKKSGHAFTAHPRIDKATKRLLGWSWKTLLPKHFGVPDPRLWRSAKGKKSRTESRGAGLEVTFYEWDEAFDLPFPPVTIRVSDCPSPP--HDWVVTPNYYVWMQSAFRLNLLPCVLGLKGPGECMVPVKGEEARAVV--HLVPRPGGRHAG--KPPVAIEMEPYFMTHWSHAFDVEGDGEEGNKVVGFAAGWDKSLFSPANDDGHMFGHTYRGAPDFSRLPIIRYYRLDVDLERKRASFVAVPSLAKTFLDFPKVHPRFEAEGAPRHVWAMACNDRGVS--SPPQGYVHLDLGTGLVESWHAPSSAAALAAARQAPSSSLPSMFASPPLSLSAVDMNRDDTGGELSVEDRTKHIVVGEGVLAPRAACEPGKGDEQEELDSYWMGVEFNALTGRRSLCIFNAADIAAGPLCKLHLQHSLPWGIHSEWAPGLLV 690
            +S   SD  PTS      ++ D W   + SL ++   DYWI++ EG IP +L GT    GP   +  G   +   +GDG ++ ISF  G+ H   RF+ T AYLEE+   + LYRG FGT K G  GW A             NAFD + KN +NT  +YWGG+LL+ +E A PH LD  TL+T G+  F G++  GE                   AF+AHPR D ++ R  G                     A    + +   G    +T +E D+   +    V     + P     HD+ +TPNY ++ Q+    N LP  LG++G GEC+    G+  RAV+     P+   ++ G  +    IE+E  F+ H ++A+      EEG++++  +  ++       N D   F  T     DF  L   + +R  ++++   +       +  +  +FP +HP  +     R+V+ +   D  VS  +P Q ++ LD  TG  + W                 S+ P  FAS P                               +  P   C+PG     E+ D + + V +++   R  + I +A D+  GP+ KLHL+H +P+G+H  +   + +
Sbjct:    2 QSFSTSDTLPTSTNGKKTYNRDDWKGGYQSLKQE--FDYWIDEIEGEIPPELTGTLFRNGPGLLDINGQTFQHPFDGDGMISRISFCNGRAHFSNRFVRTSAYLEEQAAGQILYRGVFGTQKPG--GWLA-------------NAFDFRLKNIANTNIIYWGGKLLALWEAAEPHRLDPHTLDTLGKEHFNGVLSEGE-------------------AFSAHPRFDPSSSRDDG---------------------APCMVNFSTKAGLSTAITIFELDDKAQV----VRQHTHNVPGFAFIHDFAITPNYCIFFQNPVTFNPLPFALGMRGAGECVKFQPGKPTRAVIISRNPPQTDKKNNGNYRRQQIIEIEAGFVFHHANAY------EEGDEIIIDSICYESLPEVEPNSD---FRET-----DFESLKPGQLWRFHLNIKDNTSR---KELIENSCCEFPTIHPD-QVGRNNRYVY-LGTVDPNVSGNAPLQAFLKLDRETGEKQFW-----------------SAAPKGFASEP-------------------------------IFVP---CDPGSNTGDED-DGWLLAVIYDSAEHRSDVVILDAKDLQQGPIAKLHLKHHIPYGLHGNFTSKVFI 512          
BLAST of EWM29642.1 vs. NCBI_GenBank
Match: gi|1210251014|dbj|BAZ70025.1| (Retinal pigment epithelial membrane protein [Fischerella sp. NIES-4106])

HSP 1 Score: 213.001 bits (541), Expect = 8.867e-57
Identity = 189/694 (27.23%), Postives = 297/694 (42.80%), Query Frame = 0
Query:   12 LLAF----LCPYVVRSFPGSQPQPPRSTTSIPTSPFAPTKPSCAPLPPHESIFNSDLSPTSKLPGNFDLDTWASLFASLDEDEAVDYWIEDWEGVIPEDLHGTFLTVGPSKYERGGVPIKCWLEGDGAMTAISFNKGKVHVKARFIETKAYLEEKVEDRFLYRGQFGTMKTGRHGWSAFKDSFLKIRLPPINAFDMKFKNPSNTKPLYWGGRLLSTFETALPHELDTQTLETKGEFDFGGLMRPGEAITSADPVLDAILQKKSGHAFTAHPRIDKATKRLLGWSWKTLLPKHFGVPDPRLWRSAKGKKSRTESRGAGLEVTFYEWDEAFDLPFPPVTIRVSDCPSPP-----HDWVVTPNYYVWMQSAFRLNLLPCVLGLKGPGECMVPVKGEEARAVVHLVPR------PGGRHAGKPPVAIEMEPYFMTHWSHAFDVEGDGEEGNKVVGFAAGWDKSLFSPANDDGHMFGHTYRGAPDFSRLPIIRYYRLDVDLERKRASFVAVPSLAKTFLDFPKVHPRFEAEGAPRHVWAMACNDRGVSSPPQGYVHLDLGTGLVESWHAPSSAAALAAARQAPSSSLPSMFASPPLSLSAVDMNRDDTGGELSVEDRTKHIVVGEGVLAPRAACEPGKGDEQEELDSYWMGVEFNALTGRRSLCIFNAADIAAGPLCKLHLQHSLPWGIHSEWAPGLLV 690
            LL+F    L P     FP   PQ P      P SPF   +    P+   E+    ++S  S  P  ++ + W   + SL ++   DYWI+D EG IP +L+G+    GP   +  G  I    +GDG ++ I+F+ G+ H + RF+ T AYLEE+   + LYRG FGT K G  GW A             NAFD K KN +NT  +YWG +LL+ +E A PH LD  TL+T G+  F G++  GE                   AF+AHPR D + +              F   +P L        + +   G    +T +E D          TI      S P     HD+ +TPNY V+ Q+    N +P  LG++G GEC+     +  R ++  +PR      P  +   K    +E    F+ H ++AF      E+GN+++  +  ++     P  + G+ F  T     DF  L   + +R  ++L+ K    V    L     +FP +HP+ +   +  +++  A +    ++P Q ++ +DL +G  + W                 S+ P  FAS P                               V  PR          QEE D + + + ++A   R  + I +A +   GP+ +LHL+H +P+G+H  +   + V
Sbjct:   22 LLSFPHSPLSPIPNSQFPFPNPQSP---IPFPQSPFPNPQSPLQPMQTFET--QEEISQISTKP--YNRNDWQGGYKSLKQE--FDYWIDDIEGQIPPELNGSLFRNGPGLLDINGQLIHHPFDGDGMISRITFSNGRAHFRNRFVRTDAYLEEQKAGKLLYRGVFGTQKPG--GWLA-------------NAFDFKLKNIANTNVIYWGDKLLALWEAAEPHRLDPHTLDTLGKEYFHGVLSEGE-------------------AFSAHPRFDPSCE--------------FDGGEPCL-------VNFSIKPGLSTTITIFELDTT-------GTIVRKHAHSVPGFAFIHDFAITPNYCVFFQNPVSFNPIPFALGIRGAGECIKFQPNQPTRVII--IPRRTPLKSPLDKGGLKGVQILETHSGFVFHHANAF------EQGNEIIIDSICYES---LPEVESGNDFRQT-----DFDALKPGQLWRFHLNLQDKT---VQRKLLENRCCEFPTLHPQ-KVGRSHHYLYIGAADVPSGNAPLQAFLKMDLHSGEKQLW-----------------SAAPKGFASEP-------------------------------VFVPRP-------HSQEEDDGWVLALVYDANCDRSDVVILDARNFNIGPVARLHLKHHIPYGLHGNFTSEVFV 569          
The following BLAST results are available for this feature:
BLAST of EWM29642.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112214|gb|EWM29642.1|0.000e+0100.00retinal pigment epithelial membrane protein [Nanno... [more]
gi|553193240|ref|XP_005855740.1|1.411e-96100.00retinal pigment epithelial membrane protein, parti... [more]
gi|1062968490|ref|WP_069350669.1|1.138e-7029.45lignostilbene-alpha,beta-dioxygenase [Scytonema mi... [more]
gi|938300997|gb|KPQ34545.1|2.346e-6929.75all-trans-8'-apo-beta-carotenal 15,15'-oxygenase [... [more]
gi|873223966|emb|CEM27487.1|4.829e-6127.43unnamed protein product [Vitrella brassicaformis C... [more]
gi|499368292|ref|WP_011055870.1|8.033e-6029.89lignostilbene alpha-beta-dioxygenase [Thermosynech... [more]
gi|493499793|ref|WP_006454316.1|1.911e-5927.40Retinal pigment epithelial membrane protein [Synec... [more]
gi|1111738702|gb|OJJ25133.1|6.365e-5927.72Apocarotenoid-15,15'-oxygenase [Roseofilum reptota... [more]
gi|654353155|ref|WP_027846095.1|9.631e-5827.68Apocarotenoid-15,15'-oxygenase [Mastigocoleus test... [more]
gi|1210251014|dbj|BAZ70025.1|8.867e-5727.23Retinal pigment epithelial membrane protein [Fisch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1036rna1036Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications