|
|
Properties
| Property Name | Value |
|---|
| Product | retinal pigment epithelial membrane protein |
| Orig transcript id | gnl|cribi|Naga_100050g23.6865.mrna |
| Orig protein id | gnl|cribi|Naga_100050g23.6865 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:1014253..1017135 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1036 ID=rna1036|Name=rna1036|organism=Nannochloropsis gaditana|type=mRNA|length=2977bp
GTGCACGAGCCAAGCTACTTCTTTCTGCCTCACCCTAAGATGTATATCTG
CACAATTTAAATAGGCTATCGCCGGCCCTTTACGATTGCTTCGAGCACTG
CCTTGTAGTGGACTGCACAGGGCAACGCATCTCCTACGAAACATCGCACC
CTCATACATTCGTAGCTCCTTCCTCTCCTGTCCCCCAGAGAAGTCAAAGT
TTACGTATTACCTTCTTAAATGCTCACGATGCGCCGGCTATTGAACACTC
AACCTCGCAAGACACTCTTGCACAAGCTATTTTTTAGGGTTGCGATCTTC
GGGGCCATCATTTCATTTAGGCCCGCAAGCGCTTTCTTGTCCCCATTGGT
CCCGAGATGTAGTTTTACATTCCGCCATGAAGTCTCATCCACTATAGTGT
GCATGATGGCACCTCACCGAGTACATGGTGTCGACAGTATGTGGAATTCG
CTCCATCACGGAAGCAACACGACTTTCGTTTCCGAAATCGAGGACGACGT
GTTTGCGGGATCAAACTCCTGGGCCAAGAAGGTTTACAGAGCACTCAACG
CCGCCACAAAGCGCAAGGAACCCGGCAAATTGATCATGATCCGCCACGGA
GAGTCCATGCTGAATTACAACAAGACATTCACGGGTTGGATCGACGCGGA
CCTGAACGAACGGGGCATTCGGGAGACGGAGCACTCGGCACGCTTGCTGA
TGGAGCGTGGCTACGAAATCGACGTCACCTACACCTCACGCCTAAAGCGC
GCCATTCGATCGAGTTGGATCCTCATGACGGAGCTGGGGCAGATCTATCG
GCCCGTGTACAAATCCTGGCGCCTGAACGAGAGGATGTACGGAGCCCTCG
AAGGCATGAGCAAGCCCGGGCTGGCCGAGGAGCTGGGGGAGGAAGTGGTC
CAGGCATTCCGCACGGGACTGACCACGACGCCTCCTCCCATGACGCCCGA
CCACCCCCACTGGCACATGCACGAGAAGAAGTACGCGGACGTGAAGCCGG
AGGAGATCCCCGTCACCGAGTCCCTGCAGGACACCATGGAGCGGACCTTG
CCCCTGTGGGAATCGCGCATCCTCCCAGACCTGCGATCGGGCCGCACCGT
CATGATCGTGGCGCACGCGAACTCGCTCCGGGGCATCGTCAAGCACATCG
ACAACCTGAACCAGACGGAGATCCAGTCGGTGGCCATTCCCAACGGAATC
CCCCTCGTCTACAAGTTCGACAAGAACATGGTGCCTATCGAGCAAGAGGG
AGCGGTCTCGCCCCTGACGGGAGAGTTCCTCGAGAAGAAAGGACTCCTGC
GCGCTGCCCTTGCGAAAGAGGCAGAGCTGGCCGCCTCCGTGCCTGGGTAC
TCCACCGACGGGGGTGGATTCCGAGGCAATGCCAACTTGCCCGTGATGGA
CGCACGCTTGCGGGGCCTGGCCAAGCTCTCAGAAGCCCGGCAACTTATCG
CAGCCACCAGTTTGGGAGTCCCGCCCCCGCTTGCTCCCCTTCCCCAGGCT
GTGCCAGCGACTCGCGTGGCTTACCCTCGCCTGGTGGTCCCCAAAGCCGC
GTCTTCGCCGCCGAGTGCCGGGGCACCGGATGCGAAGAACGCGCAAGAGC
ATGACCAAATCATCGTCATCATGCGCCACGGGAAGACCGAGTACAACAAG
CTCGGCGTGTTCACGGGCTGGGAAGACGCCCCCTTGGCCAACGAGGGTCG
GATCGAGGCGCGCAACGCGGGGAAGCTCCTGAAGCGGCACGGCATCGAGC
TCGACGTCGTCTACACCTCCTGGCTCTCCCGGGCTATTGAGACGGCCTGG
TTGATTGTGGACGAGCTGGACTGCCTCTGGGTGCCGATTGTCAAGTCCTG
GCGGCTGAACGAGGTGGGACGGGAGGGTTGCCAGGGAGGGTCGATGAGGG
GGTGGGGTTCTTCCATGTGCGACGTGTCAGATTGAAGCGTTTGCAGGCAT
GGCCGGAATTTGTTATTCTCGTCTGCGCGGCTGCTCTGACCCTCCTTCTT
TCCTCCCTCTGGCTGCCAGCGACATTACGGCGCCCTGACAGGCCTCTCCA
AGAAAATGATTGCCCAGCGCCACGGAGAGGCCAAATTTAAACGCTGGCGA
CGCTCCTATGCCACAAGGCCACCCGAGGTATCTTCCTTCTCGTCCCACTA
CCCCGGCAACGACGACCGATACGTGAAATACGCGGAAGACATGCGGGTCT
CGGTCCGGGAGACGCTGATTCGGTCCCTCTCCGACATGCGCGTGAAGATC
CACCGGAAGTTTCCCAAGGCGGAGAGCTTGAAAGACTGCATGAGCAGGAC
GATTCCTTTTTACACCGACCACATCGTACCGCAATCCGTCGCGAAGGGCA
AAACGGTCCTGATAGCTTCCTCGGAGAACGCGATCCGAGGCTTGTTCATG
CACCTGTGTGACATCCCCGCCGACCGCATCGCCGAGGTCGAGATTCCCAC
GGGCCTGCCGCTCGTCTACAACATTCGCAAGAGGTGCATCCAACTCCTAG
AGACGGGCTTTGAGAACCCACAAGATCCATTGGGGCACTTAAATTTCGGC
TCCTCGCCTGAGCTATTGTTCCAGCCTTGCGATGCCGAGCGGGACACGGA
GTGCTTTTTGGGCGCCGACGGGAAATCCTATAGGTACGATCCCCTGATCC
GACTGGGGGAGGCAGAGAGGAGGAATTTGGAGGAGGACATGATGGCGGAA
GCGGAGGAAAAGGCCTCGTCTAAGCCCTCCAGCGGCCCTCCCTCTCCTCC
ATCCACTTCGTCTGCTCCCGCCGCTGCTGCGTCCGCCAAGGCGGCTGCTG
CTGCCCCTCGGCCAACGGCGCCTGCTTCTGTGTAGAGGCTATGTTTGTGT
GAAGATGTAATGTATACACGTTGACAGTATAGTGCGATAAATGACAAAGA
ATCTCGTCATTTTTAGCAAGACTACCCTTCTCAGCGTGCGCGGAAAAGGT
TGCTTTCGCTTTAATTGCTTGTAATCT back to topprotein sequence of rna1036 >rna1036-protein ID=rna1036-protein|Name=rna1036|organism=Nannochloropsis gaditana|type=polypeptide|length=723bp
MATVKTDACIILLAFLCPYVVRSFPGSQPQPPRSTTSIPTSPFAPTKPSC
APLPPHESIFNSDLSPTSKLPGNFDLDTWASLFASLDEDEAVDYWIEDWE
GVIPEDLHGTFLTVGPSKYERGGVPIKCWLEGDGAMTAISFNKGKVHVKA
RFIETKAYLEEKVEDRFLYRGQFGTMKTGRHGWSAFKDSFLKIRLPPINA
FDMKFKNPSNTKPLYWGGRLLSTFETALPHELDTQTLETKGEFDFGGLMR
PGEAITSADPVLDAILQKKSGHAFTAHPRIDKATKRLLGWSWKTLLPKHF
GVPDPRLWRSAKGKKSRTESRGAGLEVTFYEWDEAFDLPFPPVTIRVSDC
PSPPHDWVVTPNYYVWMQSAFRLNLLPCVLGLKGPGECMVPVKGEEARAV
VHLVPRPGGRHAGKPPVAIEMEPYFMTHWSHAFDVEGDGEEGNKVVGFAA
GWDKSLFSPANDDGHMFGHTYRGAPDFSRLPIIRYYRLDVDLERKRASFV
AVPSLAKTFLDFPKVHPRFEAEGAPRHVWAMACNDRGVSSPPQGYVHLDL
GTGLVESWHAPSSAAALAAARQAPSSSLPSMFASPPLSLSAVDMNRDDTG
GELSVEDRTKHIVVGEGVLAPRAACEPGKGDEQEELDSYWMGVEFNALTG
RRSLCIFNAADIAAGPLCKLHLQHSLPWGIHSEWAPGLLVAVPEEREQTG
NVIRNKDGQKEVEGKEFSKGVAK back to topmRNA from alignment at CM002456.1:1014253..1017135- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna1036 ID=rna1036|Name=rna1036|organism=Nannochloropsis gaditana|type=mRNA|length=2883bp|location=Sequence derived from alignment at CM002456.1:1014253..1017135- (Nannochloropsis gaditana)
CACACCGCCACAGGAGCATGGCAACGGTCAAAACCGATGCATGCATCATT
TTACTTGCTTTTCTTTGTCCCTACGTCGTCCGATCGTTTCCTGGGTCGCA
GCCACAGCCGCCGCGCTCCACAACCTCCATCCCGACCTCCCCTTTCGCTC
CCACCAAACCAAGCTGCGCACCTCTTCCTCCTCACGAAAGCATTTTTAAT
AGCGACCTGTCGCCGACTTCAAAGCTGCCAGGCAACTTTGATTTGGACAC
GTGGGCATCGCTTTTTGCATCTTTGGACGAGGATGAGGCCGTGGACTATT
GGATAGAAGACTGGGAGGGGGTTATTCCCGAAGATCTACATGGAACTTTC
TTGACTGTCGGGCCCAGCAAATATGAGCGTGGCGGTGTCCCAATAAAATG
CTGGTTGGAGGGTGACGGAGCCATGACGGCTATCTCCTTCAACAAGGGGA
AGGTGCATGTGAAGGCACGGTTCATTGAGACGAAAGCCTACTTGGAAGAA
AAAGTTGAAGACCGTTTCCTTTATCGAGGACAATTCGGGACAATGAAGAC
AGGTCGACATGGCTGGAGCGCATTCAAAGACAGTTTTTTAAAAATTCGAC
TTCCCCCGATAAATGCATTCGACATGAAGTTCAAGAATCCGAGTAACACC
AAGCCTCTCTACTGGGGTGGTAGGCTCTTGTCCACTTTCGAGACTGCCCT
GCCTCACGAATTGGACACCCAGACATTGGAGACAAAGGGTGAATTTGACT
TTGGTGGACTAATGAGGCCAGGAGAGGCCATCACATCCGCAGATCCCGTG
CTGGACGCCATACTGCAGAAGAAAAGTGGACATGCTTTTACGGCCCATCC
TCGTATCGACAAGGCCACGAAGCGCCTACTAGGGTGGAGCTGGAAGACCT
TACTCCCAAAGCATTTTGGTGTACCTGATCCTCGTCTGTGGCGGAGCGCC
AAAGGGAAAAAAAGCAGGACGGAAAGCCGTGGTGCCGGTCTGGAAGTGAC
ATTCTATGAGTGGGATGAGGCCTTTGACCTGCCCTTTCCCCCCGTGACCA
TACGCGTTTCCGATTGTCCATCTCCACCACACGACTGGGTGGTCACACCT
AATTACTACGTGTGGATGCAGTCCGCTTTTCGCTTGAACTTGCTGCCCTG
CGTCTTGGGTTTGAAAGGGCCCGGCGAGTGCATGGTCCCCGTCAAGGGAG
AAGAGGCACGGGCCGTGGTCCATTTGGTGCCTCGTCCGGGGGGGAGGCAC
GCTGGAAAGCCGCCTGTGGCTATCGAAATGGAGCCCTACTTTATGACTCA
CTGGAGTCACGCCTTCGATGTGGAAGGGGATGGGGAAGAAGGAAACAAAG
TGGTGGGTTTCGCAGCTGGCTGGGACAAGTCTTTGTTCTCGCCTGCCAAC
GACGACGGCCACATGTTCGGGCACACCTACCGCGGCGCCCCTGACTTCTC
CCGTCTACCTATCATCCGCTACTACCGCCTGGACGTGGACTTGGAGCGAA
AGAGAGCCTCATTCGTGGCGGTGCCATCCTTAGCCAAGACTTTCCTTGAC
TTCCCCAAAGTGCACCCCCGGTTCGAGGCGGAAGGGGCTCCGCGACACGT
GTGGGCTATGGCGTGCAATGACCGCGGAGTCTCGTCGCCGCCGCAAGGAT
ACGTCCACCTGGATCTGGGCACGGGCTTGGTGGAAAGCTGGCACGCGCCT
TCCTCTGCAGCGGCATTGGCAGCAGCGCGACAAGCACCTTCTTCCTCCCT
GCCCTCGATGTTCGCGTCGCCCCCTCTTTCTTTGAGCGCGGTGGACATGA
ATAGGGACGACACTGGTGGTGAGTTGAGCGTTGAGGACAGGACGAAGCAC
ATTGTGGTGGGTGAGGGAGTACTGGCGCCGCGGGCAGCATGCGAGCCAGG
GAAGGGGGATGAGCAGGAAGAGCTCGACTCCTATTGGATGGGGGTCGAGT
TCAATGCTCTGACGGGCCGACGCTCTCTGTGTATCTTCAACGCGGCGGAC
ATTGCTGCAGGGCCGCTATGCAAGCTCCATTTGCAGCATTCTCTGCCTTG
GGGCATTCACAGTGAGTGGGCTCCGGGCTTGCTGGTAGCAGTGCCGGAGG
AGCGTGAGCAGACAGGAAATGTGATACGCAATAAGGACGGCCAGAAAGAG
GTGGAGGGCAAAGAATTCTCGAAAGGCGTCGCAAAATAGGAAGTTTCAGG
TTTGAAGCAAGCGATGTCCAGGCAAATTATCGAGTGATCCATCCTCTCCG
GCATCGCTGCGCTTCAACCATGTACAAGCTAATGTAGAGCCCAACAGTCG
TTTTTCTCTTCTAATTTCAAATGAGTGTGCAGCGCAGAGAAGTTGAGACC
ATCAAAGTGGTGGGACAGATACACGTGTACAATTTTTTTTTATCCCGTAC
GTAGTGCAGGGCACACGATCCTCCGGCCGGCGGACCTGATCCGCAATGTG
ATATTAGTTCGCGATTTTTTAGTAATTTTTGCAAGGACAAAGCAGGGCTG
GTTGACTCCTCCATAGACGTTTGGCGTACGACGTTCGATTAGCTTATGAG
CATCGCCCACTTCTGTCTGTGGCAGACATCGGTTGTAGATACACACACGA
TGCGATGCACGACACTGGCCGGGAGTATCTCTGTTTGTCTTGAATATCTT
CTCTTTCCTTTTTTCCATTTCTAGTGTGCAGCGTACACGAAAAGTCTTAA
GATTACAAGCAATTAAAGCGAAAGCAACCTTTTCCGCGCACGCTGAGAAG
GGTAGTCTTGCTAAAAATGACGAGATTCTTTGTCATTTATCGCACTATAC
TGTCAACGTGTATACATTACATCTTCACACAAACATAGCCTCTACACAGA
AGCAGGCGCCGTTGGCCGAGGGGCAGCAGCAGC back to topCoding sequence (CDS) from alignment at CM002456.1:1014253..1017135- >rna1036 ID=rna1036|Name=rna1036|organism=Nannochloropsis gaditana|type=CDS|length=2172bp|location=Sequence derived from alignment at CM002456.1:1014253..1017135- (Nannochloropsis gaditana)
ATGGCAACGGTCAAAACCGATGCATGCATCATTTTACTTGCTTTTCTTTG
TCCCTACGTCGTCCGATCGTTTCCTGGGTCGCAGCCACAGCCGCCGCGCT
CCACAACCTCCATCCCGACCTCCCCTTTCGCTCCCACCAAACCAAGCTGC
GCACCTCTTCCTCCTCACGAAAGCATTTTTAATAGCGACCTGTCGCCGAC
TTCAAAGCTGCCAGGCAACTTTGATTTGGACACGTGGGCATCGCTTTTTG
CATCTTTGGACGAGGATGAGGCCGTGGACTATTGGATAGAAGACTGGGAG
GGGGTTATTCCCGAAGATCTACATGGAACTTTCTTGACTGTCGGGCCCAG
CAAATATGAGCGTGGCGGTGTCCCAATAAAATGCTGGTTGGAGGGTGACG
GAGCCATGACGGCTATCTCCTTCAACAAGGGGAAGGTGCATGTGAAGGCA
CGGTTCATTGAGACGAAAGCCTACTTGGAAGAAAAAGTTGAAGACCGTTT
CCTTTATCGAGGACAATTCGGGACAATGAAGACAGGTCGACATGGCTGGA
GCGCATTCAAAGACAGTTTTTTAAAAATTCGACTTCCCCCGATAAATGCA
TTCGACATGAAGTTCAAGAATCCGAGTAACACCAAGCCTCTCTACTGGGG
TGGTAGGCTCTTGTCCACTTTCGAGACTGCCCTGCCTCACGAATTGGACA
CCCAGACATTGGAGACAAAGGGTGAATTTGACTTTGGTGGACTAATGAGG
CCAGGAGAGGCCATCACATCCGCAGATCCCGTGCTGGACGCCATACTGCA
GAAGAAAAGTGGACATGCTTTTACGGCCCATCCTCGTATCGACAAGGCCA
CGAAGCGCCTACTAGGGTGGAGCTGGAAGACCTTACTCCCAAAGCATTTT
GGTGTACCTGATCCTCGTCTGTGGCGGAGCGCCAAAGGGAAAAAAAGCAG
GACGGAAAGCCGTGGTGCCGGTCTGGAAGTGACATTCTATGAGTGGGATG
AGGCCTTTGACCTGCCCTTTCCCCCCGTGACCATACGCGTTTCCGATTGT
CCATCTCCACCACACGACTGGGTGGTCACACCTAATTACTACGTGTGGAT
GCAGTCCGCTTTTCGCTTGAACTTGCTGCCCTGCGTCTTGGGTTTGAAAG
GGCCCGGCGAGTGCATGGTCCCCGTCAAGGGAGAAGAGGCACGGGCCGTG
GTCCATTTGGTGCCTCGTCCGGGGGGGAGGCACGCTGGAAAGCCGCCTGT
GGCTATCGAAATGGAGCCCTACTTTATGACTCACTGGAGTCACGCCTTCG
ATGTGGAAGGGGATGGGGAAGAAGGAAACAAAGTGGTGGGTTTCGCAGCT
GGCTGGGACAAGTCTTTGTTCTCGCCTGCCAACGACGACGGCCACATGTT
CGGGCACACCTACCGCGGCGCCCCTGACTTCTCCCGTCTACCTATCATCC
GCTACTACCGCCTGGACGTGGACTTGGAGCGAAAGAGAGCCTCATTCGTG
GCGGTGCCATCCTTAGCCAAGACTTTCCTTGACTTCCCCAAAGTGCACCC
CCGGTTCGAGGCGGAAGGGGCTCCGCGACACGTGTGGGCTATGGCGTGCA
ATGACCGCGGAGTCTCGTCGCCGCCGCAAGGATACGTCCACCTGGATCTG
GGCACGGGCTTGGTGGAAAGCTGGCACGCGCCTTCCTCTGCAGCGGCATT
GGCAGCAGCGCGACAAGCACCTTCTTCCTCCCTGCCCTCGATGTTCGCGT
CGCCCCCTCTTTCTTTGAGCGCGGTGGACATGAATAGGGACGACACTGGT
GGTGAGTTGAGCGTTGAGGACAGGACGAAGCACATTGTGGTGGGTGAGGG
AGTACTGGCGCCGCGGGCAGCATGCGAGCCAGGGAAGGGGGATGAGCAGG
AAGAGCTCGACTCCTATTGGATGGGGGTCGAGTTCAATGCTCTGACGGGC
CGACGCTCTCTGTGTATCTTCAACGCGGCGGACATTGCTGCAGGGCCGCT
ATGCAAGCTCCATTTGCAGCATTCTCTGCCTTGGGGCATTCACAGTGAGT
GGGCTCCGGGCTTGCTGGTAGCAGTGCCGGAGGAGCGTGAGCAGACAGGA
AATGTGATACGCAATAAGGACGGCCAGAAAGAGGTGGAGGGCAAAGAATT
CTCGAAAGGCGTCGCAAAATAG back to top
|