EWM29623.1, cds1021 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29623.1 vs. NCBI_GenBank
Match: gi|585112195|gb|EWM29623.1| (hypothetical protein Naga_100050g39 [Nannochloropsis gaditana]) HSP 1 Score: 556.984 bits (1434), Expect = 0.000e+0 Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0 Query: 1 MQSHNVVSLSTVVAGTLSNMRVVTFASFALAVFPFVTNAWTMKAGMSDSQGRCRIPPSASAPRSRRDALCIGSIPAVTLGFAASGLILQYPRRTEAAFPFGGDGDVAGQLDDVARARQKVEEVLSGLKSKQLKGGKDDSATVVRYMDAHYKPLQEKMVTLAPKMKVGDEEKQKRLETLPLLLKGHLFELAAAARTGVAAEQLQEMEEVAESVDEFLALARESGRYQVRDYLGPAPEFDVKREYGPFACEFWGKVRLPESNVCVWPDEVEKK 271 MQSHNVVSLSTVVAGTLSNMRVVTFASFALAVFPFVTNAWTMKAGMSDSQGRCRIPPSASAPRSRRDALCIGSIPAVTLGFAASGLILQYPRRTEAAFPFGGDGDVAGQLDDVARARQKVEEVLSGLKSKQLKGGKDDSATVVRYMDAHYKPLQEKMVTLAPKMKVGDEEKQKRLETLPLLLKGHLFELAAAARTGVAAEQLQEMEEVAESVDEFLALARESGRYQVRDYLGPAPEFDVKREYGPFACEFWGKVRLPESNVCVWPDEVEKK Sbjct: 1 MQSHNVVSLSTVVAGTLSNMRVVTFASFALAVFPFVTNAWTMKAGMSDSQGRCRIPPSASAPRSRRDALCIGSIPAVTLGFAASGLILQYPRRTEAAFPFGGDGDVAGQLDDVARARQKVEEVLSGLKSKQLKGGKDDSATVVRYMDAHYKPLQEKMVTLAPKMKVGDEEKQKRLETLPLLLKGHLFELAAAARTGVAAEQLQEMEEVAESVDEFLALARESGRYQVRDYLGPAPEFDVKREYGPFACEFWGKVRLPESNVCVWPDEVEKK 271
BLAST of EWM29623.1 vs. NCBI_GenBank
Match: gi|873219559|emb|CEM37397.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 116.316 bits (290), Expect = 9.349e-28 Identity = 72/152 (47.37%), Postives = 100/152 (65.79%), Query Frame = 0 Query: 112 DVARARQKVEEVLSGLKSKQLKGGKDDSATVVRYMDAHYKPLQEKMVTLAPKMKVGDEEKQKRLETLPLLLKGHLFELAAAARTGVAAEQLQEMEEVAESVDEFLALARESGRYQVRDYLGPAPEFDVKRE-YGPFACEFWGKVRLPESNVC 262 ++A R V ++L LK+ +LKGG DS TV ++ +Y+P+QEKM TL+ K+ + D K +RL LPLLLKGHL EL A + QL+E+EEV E+++EFL LA S +Y + P P+F+ +++ YG F CEFWGK RLPESN C Sbjct: 100 EIADYRPYVLKILDKLKTGKLKGGTYDSGTVANFLGIYYRPMQEKMETLSAKIDLEDTTKTERLRLLPLLLKGHLAELREAVISQRPERQLEEVEEVGETLNEFLTLA--SAKYTIPPIPVP-PDFNPEKDYYGIFGCEFWGKRRLPESNRC 248
BLAST of EWM29623.1 vs. NCBI_GenBank
Match: gi|298709400|emb|CBJ31333.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 111.309 bits (277), Expect = 1.112e-25 Identity = 71/180 (39.44%), Postives = 110/180 (61.11%), Query Frame = 0 Query: 87 ILQYPRRTEA-AFPFG-GDGDVAGQLDDVARARQKVEEVLSGLKSKQLKGGKDDSATVVRYMDAHYKPLQEKMVTLAPKMKVGDEEKQKRLETLPLLLKGHLFELAAAARTGVAAEQLQEMEEVAESVDEFLALARESGRYQVRDYLGP--APEFDVKREYGPFACEFWGKVRLPESNVC 262 ++ P T A A PFG D ++ VA + V ++ LK+ LKGG +DS V+R ++ + +P+QE+M+ +AP M++ E ++R++ LPL++KGHL EL AA T A EQL+E++EV E++DEF+ALA+ RY++ L P AP+ D + G F C F+G R S+ C Sbjct: 83 VVARPTETPAFALPFGPKDNPELEEVVKVAGYSRFVNKLEQDLKAGALKGGPEDSVVVLRVLEVYLEPMQEEMLKVAPLMQLAGRENRERVKLLPLIMKGHLLELKAACGTKDAKEQLEEVQEVRETLDEFIALAKT--RYEIAP-LDPEGAPDGD---QLGIFGCSFYGMKRTDGSSRC 256 The following BLAST results are available for this feature:
BLAST of EWM29623.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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