rna1022, rna1022 (mRNA) Nannochloropsis gaditana

Overview
Namerna1022
Unique Namerna1022
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1473
Alignment locationCM002456.1:988548..989363 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100050g39.6846.mrna
Orig protein idgnl|cribi|Naga_100050g39.6846
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:988548..989363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100050g39gene985Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1022rna1022-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29623.1cds1021Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1022 ID=rna1022|Name=rna1022|organism=Nannochloropsis gaditana|type=mRNA|length=1473bp
ATGTTGGGCCCCTCTTTAATGCGCCGAGAGCTATCGGCAAATCTCTTATT
TTTGTACTTGCTTCGGACCTCGGCTGCCGTAGTGACTCCGCCAGAACGCC
CAGCTTGGGCGCGGGGCTATGTGGCCTTCCATAAAGACAGGTCGGGAATG
AAGGCCTCTGCCACAGCTAGCGCCGCAGCTGGCAACGCGGCACACGATCA
GGGCCATTTTTTTACACGTTCCAGTCCTTTCGGTCGGGTCGACGGGTCTT
CAGCCGGCCGTAGCTCGCCCTCCAAAAGGGATCCTTGTGGAAGCAACGCC
GGGAATCATGTGAGCAGTTTGAGCAAGACGAGCCATAGCATCAGGACATC
GGCGTCAGCCAAGGCCTCATTGTACGCTGGAAACACCTTGGAAGTCGCCC
CGCCCCAAGTCTGCATCCGGACGGCGAGGCGGGAGGATATCCCCGCTATC
GAAGCCTGCAACCTGAAGACACTGCCCGAGAACTACCCGAACGCCTTTTA
TTACAACCACTTGCTACAGTGGCCGTACTTGGCTCTGGTAGCGGAGAGGC
AGACTCCTGCTCGCGCTGGCGCCTACCCGGGACGGAAAACGGGCCACGTC
TCGTCTCTGGCTGTACTGGACGACTTTCGCCGTCTGGGTATTGCACGGGA
GCTGATGGAAATCTTGCACGTGCAGATGAAGTTCCGGTATGGGGTGGACT
GTAGCACCCTCCACGTCCGGTGCAGCAACCGGGGGGCGCAGAAGCTCTAC
TTGAACTCGCTGGGCTACCGCGTGGTGGAGACGGTTCAGAAATATTACCA
AGACGGCGCGGACGCCTACTACATGAAGCTGAATTTCCGCCCGTCCGCGG
ACCAGCATCCAGATGAGCGGTGGCAGGAGGAGGGCGAGGAAGGGAGGGAG
GTGCAGGAGGCATTGGTGGGGTCGAACGGTCGGCGGGGCCGTGTCAAGGG
CCCGGGCAGTGGCGGAAGTGGTGTCATCGGCAGCGGTTTTAGCGTGCGGG
AGGAAGAGACAGCTCCCTTGACTCAGGACAGCCGAGGGTACTTTCATCTC
AGCCCGGGCCCGTCTAGGAGGGGCGGGGTAGAGGGAGGAGCGGCGGCGAT
GACTCCGGCTTTTCGGCCAGGGGGGTCTGGAGGCCGTCGTGGGAAGTTGG
CGGGGGGTCGACAGAGCGAGTGCCTGAGGGGTTGGAACAATAGGGCTCTT
ATACAGGCATATCCCGGGTCCGAGCGGCCCGAGAGAGAAAGCGAGCGGTT
CCAAGGATGCCAAACGGAGCCGCCTCGGACTCGGAGGATGGGAAGGGGAA
GGAGGATCCTGCAGCCAGCGCTTGGGAGGGACGGATCGGGAGGCAGAGAG
AGGGGCAATTTTAAGCGGTCCACAAATGCGAGAAAAGACCCGCTCCCTTG
TGAGAGGAGGGGCACGTGGGATGTAGAGTGTGACGGAGGACATAGACAAG
ACGGAGTGGTGGGCGTGCAATAA
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protein sequence of rna1022

>rna1022-protein ID=rna1022-protein|Name=rna1022|organism=Nannochloropsis gaditana|type=polypeptide|length=271bp
MQSHNVVSLSTVVAGTLSNMRVVTFASFALAVFPFVTNAWTMKAGMSDSQ
GRCRIPPSASAPRSRRDALCIGSIPAVTLGFAASGLILQYPRRTEAAFPF
GGDGDVAGQLDDVARARQKVEEVLSGLKSKQLKGGKDDSATVVRYMDAHY
KPLQEKMVTLAPKMKVGDEEKQKRLETLPLLLKGHLFELAAAARTGVAAE
QLQEMEEVAESVDEFLALARESGRYQVRDYLGPAPEFDVKREYGPFACEF
WGKVRLPESNVCVWPDEVEKK
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mRNA from alignment at CM002456.1:988548..989363+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1022 ID=rna1022|Name=rna1022|organism=Nannochloropsis gaditana|type=mRNA|length=816bp|location=Sequence derived from alignment at CM002456.1:988548..989363+ (Nannochloropsis gaditana)
ATGCAATCGCATAATGTCGTCTCTTTATCTACAGTTGTTGCAGGCACCTT
ATCAAACATGCGAGTGGTCACGTTTGCGTCATTTGCACTGGCTGTGTTTC
CCTTCGTGACGAATGCTTGGACAATGAAGGCCGGCATGTCTGACTCGCAA
GGTCGCTGCCGCATTCCCCCGTCAGCCAGTGCACCCCGGAGTCGAAGGGA
CGCCCTGTGTATTGGATCCATCCCAGCCGTGACCTTGGGTTTCGCGGCGA
GCGGCTTGATTCTACAATACCCTAGACGAACGGAAGCCGCGTTTCCTttc
ggaggagatggggacGTGGCAGGTCAGCTCGACGACGTTGCGCGGGCTCG
TCagaaggtggaagaggtcTTAAGTGGTCTTAAATCGAAGCAGCTGAAGG
GCGGAAAGGATGACTCCGCGACCGTCGTGCGATATATGGACGCACACTAC
AAGCCATTGCAGGAGAAAATGGTCACGTTAGCGCCCAAGATGAAGGTGGG
CGACGAAGAAAAGCAGAAGCGTCTCGAGACTTTGCCGCTGCTCTTAAAGG
GGCATCTATTCGAGCTGGCCGCCGCGGCGCGCACTGGAGTCGCTGCAGAG
CAACTgcaagagatggaggaagtggctgAATCGGTGGATGAATTTTTGGC
CCTGGCGAGAGAGTCTGGGAGGTATCAGGTGAGGGATTACCTGGGGCCCG
CCCCGGAGTTCGACGTCAAACGGGAATACGGGCCTTTCGCCTGCGAGTTT
TGGGGCAAAGTCCGCCTGCCCGAGAGTAACGTGTGCGTATGGCCCGACga
ggtggaaaagaaataG
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Coding sequence (CDS) from alignment at CM002456.1:988548..989363+

>rna1022 ID=rna1022|Name=rna1022|organism=Nannochloropsis gaditana|type=CDS|length=816bp|location=Sequence derived from alignment at CM002456.1:988548..989363+ (Nannochloropsis gaditana)
ATGCAATCGCATAATGTCGTCTCTTTATCTACAGTTGTTGCAGGCACCTT
ATCAAACATGCGAGTGGTCACGTTTGCGTCATTTGCACTGGCTGTGTTTC
CCTTCGTGACGAATGCTTGGACAATGAAGGCCGGCATGTCTGACTCGCAA
GGTCGCTGCCGCATTCCCCCGTCAGCCAGTGCACCCCGGAGTCGAAGGGA
CGCCCTGTGTATTGGATCCATCCCAGCCGTGACCTTGGGTTTCGCGGCGA
GCGGCTTGATTCTACAATACCCTAGACGAACGGAAGCCGCGTTTCCTttc
ggaggagatggggacGTGGCAGGTCAGCTCGACGACGTTGCGCGGGCTCG
TCagaaggtggaagaggtcTTAAGTGGTCTTAAATCGAAGCAGCTGAAGG
GCGGAAAGGATGACTCCGCGACCGTCGTGCGATATATGGACGCACACTAC
AAGCCATTGCAGGAGAAAATGGTCACGTTAGCGCCCAAGATGAAGGTGGG
CGACGAAGAAAAGCAGAAGCGTCTCGAGACTTTGCCGCTGCTCTTAAAGG
GGCATCTATTCGAGCTGGCCGCCGCGGCGCGCACTGGAGTCGCTGCAGAG
CAACTgcaagagatggaggaagtggctgAATCGGTGGATGAATTTTTGGC
CCTGGCGAGAGAGTCTGGGAGGTATCAGGTGAGGGATTACCTGGGGCCCG
CCCCGGAGTTCGACGTCAAACGGGAATACGGGCCTTTCGCCTGCGAGTTT
TGGGGCAAAGTCCGCCTGCCCGAGAGTAACGTGTGCGTATGGCCCGACga
ggtggaaaagaaataG
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Synonyms
Publications