EWM29623.1, cds1021 (CDS) Nannochloropsis gaditana

Overview
NameEWM29623.1
Unique Namecds1021
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:988548..989363 +

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Properties
Property NameValue
Protein idEWM29623.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100050g39.6846.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:988548..989363 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM29623.1 vs. NCBI_GenBank
Match: gi|585112195|gb|EWM29623.1| (hypothetical protein Naga_100050g39 [Nannochloropsis gaditana])

HSP 1 Score: 556.984 bits (1434), Expect = 0.000e+0
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0
Query:    1 MQSHNVVSLSTVVAGTLSNMRVVTFASFALAVFPFVTNAWTMKAGMSDSQGRCRIPPSASAPRSRRDALCIGSIPAVTLGFAASGLILQYPRRTEAAFPFGGDGDVAGQLDDVARARQKVEEVLSGLKSKQLKGGKDDSATVVRYMDAHYKPLQEKMVTLAPKMKVGDEEKQKRLETLPLLLKGHLFELAAAARTGVAAEQLQEMEEVAESVDEFLALARESGRYQVRDYLGPAPEFDVKREYGPFACEFWGKVRLPESNVCVWPDEVEKK 271
            MQSHNVVSLSTVVAGTLSNMRVVTFASFALAVFPFVTNAWTMKAGMSDSQGRCRIPPSASAPRSRRDALCIGSIPAVTLGFAASGLILQYPRRTEAAFPFGGDGDVAGQLDDVARARQKVEEVLSGLKSKQLKGGKDDSATVVRYMDAHYKPLQEKMVTLAPKMKVGDEEKQKRLETLPLLLKGHLFELAAAARTGVAAEQLQEMEEVAESVDEFLALARESGRYQVRDYLGPAPEFDVKREYGPFACEFWGKVRLPESNVCVWPDEVEKK
Sbjct:    1 MQSHNVVSLSTVVAGTLSNMRVVTFASFALAVFPFVTNAWTMKAGMSDSQGRCRIPPSASAPRSRRDALCIGSIPAVTLGFAASGLILQYPRRTEAAFPFGGDGDVAGQLDDVARARQKVEEVLSGLKSKQLKGGKDDSATVVRYMDAHYKPLQEKMVTLAPKMKVGDEEKQKRLETLPLLLKGHLFELAAAARTGVAAEQLQEMEEVAESVDEFLALARESGRYQVRDYLGPAPEFDVKREYGPFACEFWGKVRLPESNVCVWPDEVEKK 271          
BLAST of EWM29623.1 vs. NCBI_GenBank
Match: gi|873219559|emb|CEM37397.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 116.316 bits (290), Expect = 9.349e-28
Identity = 72/152 (47.37%), Postives = 100/152 (65.79%), Query Frame = 0
Query:  112 DVARARQKVEEVLSGLKSKQLKGGKDDSATVVRYMDAHYKPLQEKMVTLAPKMKVGDEEKQKRLETLPLLLKGHLFELAAAARTGVAAEQLQEMEEVAESVDEFLALARESGRYQVRDYLGPAPEFDVKRE-YGPFACEFWGKVRLPESNVC 262
            ++A  R  V ++L  LK+ +LKGG  DS TV  ++  +Y+P+QEKM TL+ K+ + D  K +RL  LPLLLKGHL EL  A  +     QL+E+EEV E+++EFL LA  S +Y +     P P+F+ +++ YG F CEFWGK RLPESN C
Sbjct:  100 EIADYRPYVLKILDKLKTGKLKGGTYDSGTVANFLGIYYRPMQEKMETLSAKIDLEDTTKTERLRLLPLLLKGHLAELREAVISQRPERQLEEVEEVGETLNEFLTLA--SAKYTIPPIPVP-PDFNPEKDYYGIFGCEFWGKRRLPESNRC 248          
BLAST of EWM29623.1 vs. NCBI_GenBank
Match: gi|298709400|emb|CBJ31333.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 111.309 bits (277), Expect = 1.112e-25
Identity = 71/180 (39.44%), Postives = 110/180 (61.11%), Query Frame = 0
Query:   87 ILQYPRRTEA-AFPFG-GDGDVAGQLDDVARARQKVEEVLSGLKSKQLKGGKDDSATVVRYMDAHYKPLQEKMVTLAPKMKVGDEEKQKRLETLPLLLKGHLFELAAAARTGVAAEQLQEMEEVAESVDEFLALARESGRYQVRDYLGP--APEFDVKREYGPFACEFWGKVRLPESNVC 262
            ++  P  T A A PFG  D     ++  VA   + V ++   LK+  LKGG +DS  V+R ++ + +P+QE+M+ +AP M++   E ++R++ LPL++KGHL EL AA  T  A EQL+E++EV E++DEF+ALA+   RY++   L P  AP+ D   + G F C F+G  R   S+ C
Sbjct:   83 VVARPTETPAFALPFGPKDNPELEEVVKVAGYSRFVNKLEQDLKAGALKGGPEDSVVVLRVLEVYLEPMQEEMLKVAPLMQLAGRENRERVKLLPLIMKGHLLELKAACGTKDAKEQLEEVQEVRETLDEFIALAKT--RYEIAP-LDPEGAPDGD---QLGIFGCSFYGMKRTDGSSRC 256          
The following BLAST results are available for this feature:
BLAST of EWM29623.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585112195|gb|EWM29623.1|0.000e+0100.00hypothetical protein Naga_100050g39 [Nannochlorops... [more]
gi|873219559|emb|CEM37397.1|9.349e-2847.37unnamed protein product [Vitrella brassicaformis C... [more]
gi|298709400|emb|CBJ31333.1|1.112e-2539.44expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1022rna1022Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications