EWM29678.1, cds997 (CDS) Nannochloropsis gaditana

Overview
NameEWM29678.1
Unique Namecds997
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:929226..929969 +
Alignment locationCM002456.1:930428..930709 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29678.1
Productaatf protein
Orig transcript idgnl|cribi|Naga_100299g1.1140.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:929226..929969 +
CM002456.1supercontigCM002456.1:930428..930709 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR025160AATF
IPR012617AATF_C
Homology
BLAST of EWM29678.1 vs. NCBI_GenBank
Match: gi|585112253|gb|EWM29678.1| (aatf protein [Nannochloropsis gaditana])

HSP 1 Score: 685.256 bits (1767), Expect = 0.000e+0
Identity = 341/341 (100.00%), Postives = 341/341 (100.00%), Query Frame = 0
Query:    1 MAKVRGQLLRDIAALTTFGEGAEGYRDGDEDNYEDGTNARLAQYNNGWINGGDGGGDGTWVVEGEDGKSGSGASTGRSRLRMERAMDFVDEDERYRGKKVLRRALVDEDEDEDEDEDEGNGANSGPEGDEDVSSSEISSQQVSEDEHEKEPTLEEEMEKLRQNKGGMALLLKRSNDEQQLKAAQARKHRDMWNKLLEVRILLQRLLGMANRFPRDKAYDEYCRMDGSGETRAKFKEVSRGLRGLLETLQLLRDYMQAGAGGRVGGLAGLGRSSGRASRKKKVDTKASKGRKIRYSVHPKLEHFMFPVDPPCPTDRNRLFASLPGRGGRAAAAAEGEGTGGG 341
            MAKVRGQLLRDIAALTTFGEGAEGYRDGDEDNYEDGTNARLAQYNNGWINGGDGGGDGTWVVEGEDGKSGSGASTGRSRLRMERAMDFVDEDERYRGKKVLRRALVDEDEDEDEDEDEGNGANSGPEGDEDVSSSEISSQQVSEDEHEKEPTLEEEMEKLRQNKGGMALLLKRSNDEQQLKAAQARKHRDMWNKLLEVRILLQRLLGMANRFPRDKAYDEYCRMDGSGETRAKFKEVSRGLRGLLETLQLLRDYMQAGAGGRVGGLAGLGRSSGRASRKKKVDTKASKGRKIRYSVHPKLEHFMFPVDPPCPTDRNRLFASLPGRGGRAAAAAEGEGTGGG
Sbjct:    1 MAKVRGQLLRDIAALTTFGEGAEGYRDGDEDNYEDGTNARLAQYNNGWINGGDGGGDGTWVVEGEDGKSGSGASTGRSRLRMERAMDFVDEDERYRGKKVLRRALVDEDEDEDEDEDEGNGANSGPEGDEDVSSSEISSQQVSEDEHEKEPTLEEEMEKLRQNKGGMALLLKRSNDEQQLKAAQARKHRDMWNKLLEVRILLQRLLGMANRFPRDKAYDEYCRMDGSGETRAKFKEVSRGLRGLLETLQLLRDYMQAGAGGRVGGLAGLGRSSGRASRKKKVDTKASKGRKIRYSVHPKLEHFMFPVDPPCPTDRNRLFASLPGRGGRAAAAAEGEGTGGG 341          
BLAST of EWM29678.1 vs. NCBI_GenBank
Match: gi|646709343|gb|KDR15251.1| (Protein AATF [Zootermopsis nevadensis])

HSP 1 Score: 68.9366 bits (167), Expect = 2.523e-9
Identity = 60/194 (30.93%), Postives = 96/194 (49.48%), Query Frame = 0
Query:   61 VVEGEDGKSGSGASTGRSRLRMERAMDFVDE-DERYRGKKVLRRALVDEDEDEDEDEDEGNGANSGPEGDEDVSS-SEISSQQVSEDEHEKEPTLEEEMEKLRQNKGGMALLLKRSNDEQQLKAAQARKHRDMWNKLLEVRILLQRLLGMANRFPRDKAYDEYCRMDGSGETRAKFKEVSRGLRGLLETLQLLR 252
            VVE EDG S    S    R   +R +D ++E DERY G K+ R+AL  +  D D DE E +   S    D  +S   E  +Q+ S DE  +   L+ E +   ++      +  RS + +  K    R   ++W+ LLE RI+LQ+ L  AN+ P+   ++++    G  E +A+ ++    +  LLE+L   R
Sbjct:   37 VVENEDGFSDEEKSLNELR---KRNIDLIEEGDERYNGAKISRKALEMQGGDTD-DELESSKEGSSQADDSYISGGEEDENQEDSPDEINRNKVLQPEND---EDTNSFQHISCRSMETETEKGIAVRNQLNVWDCLLECRIMLQKTLTAANKLPQHNIFEQFT-AQGGPEFKAEIQQTIHTVTTLLESLIAFR 222          
BLAST of EWM29678.1 vs. NCBI_GenBank
Match: gi|365761365|gb|EHN03024.1| (Bfr2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7])

HSP 1 Score: 68.5514 bits (166), Expect = 4.243e-9
Identity = 76/282 (26.95%), Postives = 128/282 (45.39%), Query Frame = 0
Query:   34 EDGTNARLAQYNNGWINGGDGGGDGTWVVEGEDGKSGSGASTGRSRLRMERAMDFVDEDERYRGKKVLRRALVDEDEDEDEDEDEGNGANSGPEGDED--VSSSEISSQQVSEDEHEKEPTLEEEMEKLRQNKGGMALLLKRSNDEQQLKAAQA-----------RKHRDMWNKLLEVRILLQRLLGMANRFPRDKAYDEYCRMDGSGETRAKFKEVSRGLRGLLETLQLLRDYMQAGAGGRVGGLAGLGRSSGRASRK---KKVDTKASKGRKIRYSVHPK 299
            ED  NA L Q N     GGD        V  E  K        +S+LR E+ ++    D +Y G K  R+AL +E  D++EDE+E +      +G++D  +S    S  + +EDE EK  +  +EME+ +Q +  ++ L+++   +   K +Q+            +   +++ ++++RI LQ+ +  ANR P      +  RMD S ET+   +E  +    L   L   R   Q G            + S + S K   K+ DT  S+ ++ R +V  K
Sbjct:   24 EDEENASLFQLNEK---GGDSDFSDNEDVNTEQAKKSHYLEVEKSKLRAEKGLEL--NDSKYTGVKGSRQALYNEFSDDEEDENEKSQEEENNDGEDDDALSFRTDSDDEQAEDE-EKSDSDGDEMEEAQQKRNALSKLVQQETKQAINKLSQSVQKDASKGYSILQQTKLFDNIIDLRIKLQKAVIAANRLPLTTESWKEARMDNSRETKHLLRENEKLFNKLFNQLINFRIKFQIGDHIAQSEEKAKHKISNKRSVKELYKETDTLDSELKEYRNAVLNK 299          
BLAST of EWM29678.1 vs. NCBI_GenBank
Match: gi|401841931|gb|EJT44238.1| (BFR2-like protein [Saccharomyces kudriavzevii IFO 1802])

HSP 1 Score: 68.1662 bits (165), Expect = 5.986e-9
Identity = 76/282 (26.95%), Postives = 128/282 (45.39%), Query Frame = 0
Query:   34 EDGTNARLAQYNNGWINGGDGGGDGTWVVEGEDGKSGSGASTGRSRLRMERAMDFVDEDERYRGKKVLRRALVDEDEDEDEDEDEGNGANSGPEGDED--VSSSEISSQQVSEDEHEKEPTLEEEMEKLRQNKGGMALLLKRSNDEQQLKAAQA-----------RKHRDMWNKLLEVRILLQRLLGMANRFPRDKAYDEYCRMDGSGETRAKFKEVSRGLRGLLETLQLLRDYMQAGAGGRVGGLAGLGRSSGRASRK---KKVDTKASKGRKIRYSVHPK 299
            ED  NA L Q+N     GG+        V  E  K        +S+LR E+ ++    D +Y G K  R+AL +E  D++EDE+E +      +G++D  +S    S  + +EDE EK  +  +EME+ +Q +  ++ L+++       K +Q+            +   +++ ++++RI LQ+ +  ANR P      +  RMD S ET+   KE  +    L   L   R   Q G            + S + S K   K+ DT  S+ ++ R +V  K
Sbjct:   24 EDEENASLFQHNEK---GGESDFSDNEDVNTEQAKKSHYLEVEKSKLRAEKGLEL--NDSKYTGVKGSRQALYNEFSDDEEDENEKSQEEENNDGEDDDALSFRTDSDDEQAEDE-EKSDSDGDEMEEAQQKRNALSKLVQQETKRAINKLSQSVQKDASKGYSILQQTKLFDNIIDLRIKLQKAVIAANRLPLTTESWKEARMDNSRETKHLLKENEKLFNKLFNQLINFRIKFQIGDHIAQSEEKAKHKISNKRSVKELYKETDTLDSELKEYRNAVLNK 299          
BLAST of EWM29678.1 vs. NCBI_GenBank
Match: gi|240278012|gb|EER41519.1| (bfr2 [Histoplasma capsulatum H143])

HSP 1 Score: 65.855 bits (159), Expect = 2.304e-8
Identity = 77/272 (28.31%), Postives = 117/272 (43.01%), Query Frame = 0
Query:   82 MERAMDFVDEDERYRGKKVLRRALVDEDEDEDEDEDEGNGANSGPEGDEDVSSSEISSQQVSEDEHEKEPTLEEEMEKLRQ----NKGGMALLLKRSNDEQQLKAAQARKHRDMWNKLLEVRILLQRLLGMANRF---PRDKAYDEYCRM----DGSGETRAKFKEV---SRGLRGLLETLQLLRDYMQAGAGGRVGGLAGLGRSSGRASR-------KKKVDTKASKGRKIRYSVHPKLEHFMFPVDPPCPTDRNR--LFASLPGRGGRAA 330
            M  + D +DE E  R         V ED  + E ED  +G  SG E D    S +      S D+    P   ++  ++R+    +   +A  L ++      K +  ++ R  +  +L  RI LQR + + N     P  +   +  +     +G+     +  EV   S   + LL    L+ + M A +G     +    R +   +        K+ VDTKASKGRK+RY+VH KL++FM P D     DR R   FASL GR  RA 
Sbjct:  106 MSESADELDESENGR---------VGEDSSDAESEDMDHGLRSGGELDGVTDSEDDQEFGDSNDDETSAPAASDDRAEIRRLMASDHKTVATSLSQAVKADAAKGSAIKRQRSAFGAILNARIKLQRGITILNELDSHPSKRTMTDKVQQLKQPNGTAGASHELNEVYNDSSFYQALLR--DLVEERMSANSGVEALQMQLPSRLATHPTTGMRKDKVKRSVDTKASKGRKMRYTVHEKLQNFMPPEDRGTWGDRAREEFFASLLGRSARAV 366          
BLAST of EWM29678.1 vs. NCBI_GenBank
Match: gi|1183325317|gb|ORX55087.1| (hypothetical protein DM01DRAFT_1335384 [Hesseltinella vesiculosa])

HSP 1 Score: 61.6178 bits (148), Expect = 4.960e-7
Identity = 54/190 (28.42%), Postives = 93/190 (48.95%), Query Frame = 0
Query:   62 VEGEDGKSGSGASTGRSRLRMERAMDFVDEDERYRGKKVLRRALVDEDEDED-----EDEDEGNGANSGPEGDEDVSSSEISSQQVSEDEHEKEPTLEEEMEKLRQNKGGMALLLKRSNDEQQLKAAQARKHRDMWNKLLEVRILLQRLLGMANRFPRDKAYDEYC--RMDGSGETRAKFKEVSRGLRGL 244
            +E  DG+S      G+S LR  + +  + +D RY G++  R+ L  ++ D D     +DE    GA        D    E  S    ED+ +++  L EE++K+++ +  M   L +S  +   K    R+   +W+ +LEVRI +Q+++  ANR P+   +DE      D   ET+A+ ++V   L  L
Sbjct:   44 MEEHDGRSHY-VKMGKSSLRNNQPL--LMDDPRYSGERTSRKELYSDESDSDTEGYDQDETVPFGAVDDDSEGSDDDDDEQFSSDAEEDDPQEDQALTEELQKIQEEEKTMLQQLTKSASDDVEKGQHVRQQLTLWDNVLEVRIRMQKVVENANRLPQHDRWDEIKDEMSDDINETKAELRQVLDDLMEL 230          
The following BLAST results are available for this feature:
BLAST of EWM29678.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585112253|gb|EWM29678.1|0.000e+0100.00aatf protein [Nannochloropsis gaditana][more]
gi|646709343|gb|KDR15251.1|2.523e-930.93Protein AATF [Zootermopsis nevadensis][more]
gi|365761365|gb|EHN03024.1|4.243e-926.95Bfr2p [Saccharomyces cerevisiae x Saccharomyces ku... [more]
gi|401841931|gb|EJT44238.1|5.986e-926.95BFR2-like protein [Saccharomyces kudriavzevii IFO ... [more]
gi|240278012|gb|EER41519.1|2.304e-828.31bfr2 [Histoplasma capsulatum H143][more]
gi|1183325317|gb|ORX55087.1|4.960e-728.42hypothetical protein DM01DRAFT_1335384 [Hesseltine... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna998rna998Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications