rna998, rna998 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna998
Unique Name	rna998
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4270
Alignment location	CM002456.1:929226..930709 +

Link to JBrowse

Properties


Property Name	Value
Product	aatf protein
Orig transcript id	gnl\|cribi\|Naga_100299g1.1140.mrna
Orig protein id	gnl\|cribi\|Naga_100299g1.1140
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:929226..930709 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100299g1	gene961	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna998	rna998-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29678.1	cds997	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:929226..930709+
coding sequence from alignment at CM002456.1:929226..930709+

mRNA sequence

>rna998 ID=rna998|Name=rna998|organism=Nannochloropsis gaditana|type=mRNA|length=4270bp
ACCACAGACACCCGCAGCGCTTTTCCTCCATGACCAGCCATCATCGCAAA
CATTAATACGCTTTTTGGGGGGGTGCATACGCACGACAGGACCGTCAGGT
CCTTCCTACCTTGAGAAGCAAATGGACACGGCGACTTTACAAAACTCGCG
GCCACTCATTGTCAGCCAGGATGTATCAGCCATGCAGGTGGATGGCTGTC
GACTCGACCACGAGGCCCCTGGGCGGCGTACATCCCCTCCTCCCTGGGAG
CATGAGAAGCAGAATTCTCGAGGGCAAGAGCAGACCGCACCACATGTGCA
GCGGCATGAAGATCTTGCGATTGATCTAACCTTGAATGACAGCGAGGATG
GAGGCGATGGATCTTCTTGTGATTTCGAAAGGACAGAAAATGGAGAGAGA
CACGTCGGAGCACCGCGATCGCAGCAGCAGCAAGCGCAGCAGCCGCGCTC
GACTGCTCCGAGCGCTCACGGGCCAAATGCTGGCTCGGGCTATGACGATG
TACAGCTCAACTTCTCCCAGTATGGTCAACCAGATTGCATCCAACAGACG
CAGTTCACACCCACACAGGAGCTAGCTGGGCACGGGCGACAGGGAGGAAG
GCAACAAGACGAGCAGGCTGGCGCCCTCGGAAGCCGAGGGAGGGATGGAG
CGGGAGCATCTATAATCCCCATGCCCTTGGCAATGGCTGCGACCCCCAAC
GAGCATCTGCGCCTGAGACACCAAGCCTTCCTGGCGGAGCAAGAGTTCTA
CCGGCAGCAAGAGTTCTACCGACGGGGGCGACCCTGGAACCGTGCTCCCG
AGGTCCCCTCGGTTCCCACTCTCCCTGGACACATGCGAGTGCAGCCACCG
TTGGGCCTGGGGTCCGTGCAGTTGGGGGGGTACCCGCTGCCCTACTACCC
TGCGTACGTGCAGAGCCGTGGCATGGGCGTGACCGGCGGGGTGGCAAGCA
GTGCCAGCGCGGACAAGTACGGCGTCATGGGGAGGATCGGCACGATTGAG
AGGCCCTCGTACGTGTCCGTGGCGCCCAGCATTCATTTTGCAGTGTCTTC
GGGGGGGGAGTTCGCGGCGAGGCTGACCGGGCCCGTCCCCGGTAGCGTGC
TTTCCACCTTCCGCTTGACCCCTGGGGCCCGGCACAAGAAGAGCAAACGG
CGCTGGTACTTCCCCTTGACCGCGCACAACAACCTCTGCGTGGCTGTGGA
CCAGCTTCGCCGCCAACATTACCGGGAGACGGGCGTCGTCCTGGCCCTCT
CCCCCATCCCCAACGACGTCCTGCGCCAGCTGAGCATCCAGACGGACGGA
GAGCGGCTGGCCGAGAGCGAGTCCCAGAAACAGGCGCATGACAAGCTGGG
CAAGCTCCTACCCCGGCGCTTGCTGGAGGCCCTGGCGCCCTTCCAGAGGG
AAGGGGTGTCATTTGTGGTGGACCGCGAGGGGCGGGGCCTGATCGCCGAC
GAGATGGGTCTGGGCAAGACCATCCAAGCCATTGCCGTCGCCTGCGTCTA
CAAAGCCGAGTGGCCCCTGCTTGTCATGTGCCCCTCCTCTGCCCGCTACC
ACTGGGAGGCGGAGCTCTTAAAGTGGCTTGACCGGGACGTGTTAAAAAAG
GAGGAGATCCAGGTGGTGAAAGCGGGGAGGGAGCGCCTGCATGAGACGAG
CAAGGTGGTCATCCTCTCCTACAGCCTGGCCCTCCGCCTCAAGGAGGTGC
TCCGCGCGCCAGTCCGGAGCGCCGGGGTGGCGGTAGGGCACCGTCAGCAA
GCCCGCTTCCGTGTGGTCGTGGCGGACGAGTGCCATTACCTTAAAAACGC
CGGCGCGCAACGGACCAAGGAGCTCTTGCCCCTGCTGGCCGAGGCCACGC
GCGCCATCCTCCTCTCGGGCACCCCGGCTCTCTCCCGTCCGCGTGAGCTG
TGGACGCAACTGAATGTGCTGAACGGGCGAGCCTGGAGCGACATGTCCTC
CTTCATTCGCCGGTACTGCACCGGGGGCCGGGGCCGCAAGACGTCGGGGC
CCGGGAAAAAGTGGCAGGGGCGCGGCCAAGGCGCCGCGAACCTCCGGGAA
CTGCACGAGATGCTCAAGGCCACCGTTATGGTCCGTCGTCGGAAGAAGGA
TATCTTGACGGGCCTGCCGCCCAAGCGGCGCACCTTCCACAAGCTGACAG
TGCCGGAGCAGGCCATCCGGGGGAAGTTGGAGGGCGCCCTCGAGGCCCTG
AGCATTGTCTCGGCCACGGCGAAGAAGCGGGCGAGGAAACGATCGAGGAG
GCAGGCGGAGGGCGGGGGGGAGGAATCGGAGGATTTGTACGCCACCCTGG
CCAGGCAGCGGCGGGAGCAGAGAGCCAGAGAAAGTGGCACGGGCGCGGTT
CCCCCTGGAGGCGAGGAGGGGAAGGGTGTCGCCGGAGCGGGAGCGAATAG
GCAAAGCGTTGAAGCCTCACAAGGGGAAGGAGAAATGGGGGAGCCAGGGT
CGGGGGTGGCAATGGAGGACTGGAGCGCGCGGGAGATCCAGCAACGGAAG
AAGGTGTTGCTGATGGAGGTCTTCCGGCTGACGGGGACGGCCAAGATCCC
TCTGGCCGTGGACCGTGTCAAAGCTCTGCTTGCCTCGGAGCTCTCGGGAA
AATTCCTCGTCTTCGCCCACCACATGAATGTGATGAACGGGATCGAAGAC
GGCTGCCTCCGCGACGTGCCGCACATCCGCATCGACGGCTCCACCCCCCC
GCCTGAGCGACAGGCGCGAGTGGACACCTTTCAGACAGACACGGGCGTGC
GCGTGGCCCTCCTGAGCCTCACGGCCGCGGGCCTGGCCTTGACCTTGACC
GCCGCAAGCCGGGTCTTGTTCGCGGAGCTGTTCTGGACGCCGGGTGCCTT
GCTGCAGGCGGAGGACAGATGCCATCGGATCGGGCAGACGTCGGAGGTGG
AGGTCGAGTACCTGCTGGCCAGAGGCACCTTGGACGACGCGCTCTGGCCG
TTGATCCGGCGTAAGATGCGCGTGCTGGGAGAGCTCGTGGAGGGGGCGGA
GGGCTTGGACCTGGAGGCGAGGGAGGAGGGGGGAACGGGGGGGGCCAAAG
GAGGGGGGAAGGTAAAGGAGGAGGAAGGAGGAAGGGAGGAAGTCAGCGTG
GGAGGAGCCAAAAAGACTGGAGAAAAGAAAGGTGAAATGGAAGAGGACGA
TTGGGAGAAGAAGAAGGAGATTAGGGGGGCATGGGAGGGGCTAGAAGGGG
AGGAGGCGGAGGAGAAGGCGGAGGAGGAAGCGGAAGGGAAAGAAGAGAGT
GGCAAGGGTAGTTGGAGAGTTGACAAGAAAACTGGAAATGCCGCAATGGC
CAAACTCCTGATATCGACGGAGGGCAAGATGCGAGAAGCAAAGGAAGAGC
GTTTGGAATCAGCCGAGGACTCAGGCCCTTTGTCGGATAAGTCCGAATCC
ATCCTTCGTGAGTTGGCACAAGAGGACCGCGATCGATGGAAGGGAGGCAG
CGACACGGAGGAGGAGGACGACGAAGATGCCGATGACGCTGATTGGGAGT
CATCCGGACTCGATGATTCATCAGTGGGCTCCAGTGAGGAGGGGGTGTGT
GAGCTTGTGACGATAGACGACGACGGAGACGAGGAGCAAGGGAAAGAAAG
ACCCGGACCGCAAGGCGAGCTCGGCAACGACACGCGTCTTCAGTTCTCCA
TGACTTCTTGTCCTGCGCCAGAAATTACCTCACATCACCAAGAGGGATAT
GAAAAGATGAGGGACGTGAAGAGCTCGAGAGATAATGGAATAGGGGGGGA
AAGCGCAGAGGTAATAGTGCTCGACGATACTTGAACGGCGAGCGACTTTT
GGCAAATGTAAATATGCAAAGCTTTTGTACCATAGATAAGAGAGTGTGTA
TACAGTGACAAATTAAACGATTCACACACGTATTTTCATCAGGCTTTTTT
TCGAGATACTTTCTGTCGGATCTCGTTGCGGTGCTGCTCCACCCCGCAAG
AGTGCCAGTAAACTTTCTTGGTCGAAATGAAGTATGCCTACGATTGTGCA
CTCTGAGGGACTCAATAAGAATCTTGGTGATTGGCATTCAAAGGCGACGA
TTAGAAAGTGCCAAAAAGTAAGCACTTTGCGGATGACATGTCTAGGACGA
TATGATTGGATAGTCATTCCAAGTAAAACATGCCTGCGCATAACACGAGA
GTGCACACGTCAGAGTACAAAAAGCAAAATAAAAGTTTAGCAGAGAGCCA
AACCTGAATATTCCTCAGTCTAAGGTGATTAGATAAAACTTGACAAGCGA
AGTAAAGCCTAATACACTGC

protein sequence of rna998

>rna998-protein ID=rna998-protein|Name=rna998|organism=Nannochloropsis gaditana|type=polypeptide|length=341bp
MAKVRGQLLRDIAALTTFGEGAEGYRDGDEDNYEDGTNARLAQYNNGWIN
GGDGGGDGTWVVEGEDGKSGSGASTGRSRLRMERAMDFVDEDERYRGKKV
LRRALVDEDEDEDEDEDEGNGANSGPEGDEDVSSSEISSQQVSEDEHEKE
PTLEEEMEKLRQNKGGMALLLKRSNDEQQLKAAQARKHRDMWNKLLEVRI
LLQRLLGMANRFPRDKAYDEYCRMDGSGETRAKFKEVSRGLRGLLETLQL
LRDYMQAGAGGRVGGLAGLGRSSGRASRKKKVDTKASKGRKIRYSVHPKL
EHFMFPVDPPCPTDRNRLFASLPGRGGRAAAAAEGEGTGGG

mRNA from alignment at CM002456.1:929226..930709+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna998 ID=rna998|Name=rna998|organism=Nannochloropsis gaditana|type=mRNA|length=1484bp|location=Sequence derived from alignment at CM002456.1:929226..930709+ (Nannochloropsis gaditana)
ATGGCCAAGGTGAGAGGTCAGTTGCTTCGCGACATTGCCGCCCTTACCAC
CTTtggagagggggcggagggataccgagatggagacgaggacaATTATG
AGGACGGAACAAACGCGCGCCTCGCGCAATATAACAATGGATGGATAaat
ggtggtgatggaggaggtgatggcaCGTGGgtcgtggaaggagaggacgg
aaagAGTGGCTCGGGAGCTTCCACGGGTCGTTCGAGATTGCGGATGGAGC
GAGCAATGGATttcgtggacgaggatgaaAGATATCGTGGAAAGAAAGTT
TTGCGGAGGGCTTtggtggatgaggatgaggatgaggatgaggatgagga
tgagggaaacGGTGCTAATTCTGGGCctgaaggagacgaagacgTGAGCA
GCAGCGAGATATCTAGCCAACAGGTAAGCGAGGACGAGCATGAAAAGGAA
CCcactttggaggaggaaatggaaaaacTCCGGCAAaacaaaggaggaat
ggcgTTGCTTTTGAAGCGCTCCAACGACGAGCAGCAGCTCAAAGCGGCGC
AAGCGCGGAAGCACCGGGACATGTGGAACAAACTTTTGGAAGTGCGCATC
CTTTTGCAGCGACTTCTAGGCATGGCAAACCGTTTTCCACGCGACAAGGC
TTACGACGAGTACTGCAGGATGGACGGAAGCGGCGAAACTCGTGCCAAGT
TCAAAGAGGTGTCAAGGGGGTTGCGAGGGTTGCTGGAGACGTTGGTGAGG
GCGCGCGCTGAGCAGGCGGCgggtttggagggaggggaggcagggaccgc
tgcaggaagaaggaaacggGCACGGGCGACCTTGCTGGCCGGGTCGAGCC
ATGTGGAAGGCCAGGGGGATCCGTGGGTGGAGACACAAGAGGACTACATG
CGTTGCCGCGCGCACTGGGGGCAGGTGCTGGATGCGGCGCATCAGCGAGC
GACCTTGTCCTGGGCGGTGTCGAAGAAGTTTCGGGTCGTGCAGCAAGGGC
TGTGGCCTGCGATCGAGGCCGCGGCCAGGACCCCGCGGAACATGCACCGG
GCGCACCTGACGCGCGCGCAGGCGTTGGCAGCGGGGCTATTTACCGGCGt
tggcgggggcgagggggagggagaggggcagggaggggggggggggcgag
ggctgaggaggacgtggacctggaggccttCGACGACTCGGAGCTGTACC
AGCAACTGCTGCGCGATTACATGcaagcgggggcggggggtaGGGTAGGG
GGACTGGCAGGGCTGGGCAGATCCTccgggagggcgagcaggaagaagaa
agtggACACCAAGGCCTCGAAAGGGCGCAAGATCCGCTACAGCGTGCACC
CGAAGCTGGAGCATTTCATGTTCCCCGTGGACCCGCCCTGTCCCACGGAC
AGAAACCGCTTGTTCGCCTCGCTGCCtggcagggggggcagggcggcggc
ggcggcggagggggaagggaccgggggggggtga

Coding sequence (CDS) from alignment at CM002456.1:929226..930709+

>rna998 ID=rna998|Name=rna998|organism=Nannochloropsis gaditana|type=CDS|length=2052bp|location=Sequence derived from alignment at CM002456.1:929226..930709+ (Nannochloropsis gaditana)
ATGGCCAAGGTGAGAGGTCAGTTGCTTCGCGACATTGCCGCCCTTACCAC
CTTtggagagggggcggagggataccgagatggagacgaggacaATTATG
AGGACGGAACAAACGCGCGCCTCGCGCAATATAACAATGGATGGATAaat
ggtggtgatggaggaggtgatggcaCGTGGgtcgtggaaggagaggacgg
aaagAGTGGCTCGGGAGCTTCCACGGGTCGTTCGAGATTGCGGATGGAGC
GAGCAATGGATttcgtggacgaggatgaaAGATATCGTGGAAAGAAAGTT
TTGCGGAGGGCTTtggtggatgaggatgaggatgaggatgaggatgagga
tgagggaaacGGTGCTAATTCTGGGCctgaaggagacgaagacgTGAGCA
GCAGCGAGATATCTAGCCAACAGGTAAGCGAGGACGAGCATGAAAAGGAA
CCcactttggaggaggaaatggaaaaacTCCGGCAAaacaaaggaggaat
ggcgTTGCTTTTGAAGCGCTCCAACGACGAGCAGCAGCTCAAAGCGGCGC
AAGCGCGGAAGCACCGGGACATGTGGAACAAACTTTTGGAAGTGCGCATC
CTTTTGCAGCGACTTCTAGGCATGGCAAACCGTTTTCCACGCGACAAGGC
TTACGACGAGTACTGCAGGATGGACGGAAGCGGCGAAACTCGTGCCAAGT
TCAAAGAGGTGTCAAGGGGGTTGCGAGGGTTGCTGGAGACGTTGCAACTG
CTGCGCGATTACATGcaagcgggggcggggggtaGGGTAGGGGGACTGGC
AGGGCTGGGCAGATCCTccgggagggcgagcaggaagaagaaagtggACA
CCAAGGCCTCGAAAGGGCGCAAGATCCGCTACAGCGTGCACCCGAAGCTG
GAGCATTTCATGTTCCCCGTGGACCCGCCCTGTCCCACGGACAGAAACCG
CTTGTTCGCCTCGCTGCCtggcagggggggcagggcggcggcggcggcgg
agggggaagggaccgggggggggtgaATGGCCAAGGTGAGAGGTCAGTTG
CTTCGCGACATTGCCGCCCTTACCACCTTtggagagggggcggagggata
ccgagatggagacgaggacaATTATGAGGACGGAACAAACGCGCGCCTCG
CGCAATATAACAATGGATGGATAaatggtggtgatggaggaggtgatggc
aCGTGGgtcgtggaaggagaggacggaaagAGTGGCTCGGGAGCTTCCAC
GGGTCGTTCGAGATTGCGGATGGAGCGAGCAATGGATttcgtggacgagg
atgaaAGATATCGTGGAAAGAAAGTTTTGCGGAGGGCTTtggtggatgag
gatgaggatgaggatgaggatgaggatgagggaaacGGTGCTAATTCTGG
GCctgaaggagacgaagacgTGAGCAGCAGCGAGATATCTAGCCAACAGG
TAAGCGAGGACGAGCATGAAAAGGAACCcactttggaggaggaaatggaa
aaacTCCGGCAAaacaaaggaggaatggcgTTGCTTTTGAAGCGCTCCAA
CGACGAGCAGCAGCTCAAAGCGGCGCAAGCGCGGAAGCACCGGGACATGT
GGAACAAACTTTTGGAAGTGCGCATCCTTTTGCAGCGACTTCTAGGCATG
GCAAACCGTTTTCCACGCGACAAGGCTTACGACGAGTACTGCAGGATGGA
CGGAAGCGGCGAAACTCGTGCCAAGTTCAAAGAGGTGTCAAGGGGGTTGC
GAGGGTTGCTGGAGACGTTGCAACTGCTGCGCGATTACATGcaagcgggg
gcggggggtaGGGTAGGGGGACTGGCAGGGCTGGGCAGATCCTccgggag
ggcgagcaggaagaagaaagtggACACCAAGGCCTCGAAAGGGCGCAAGA
TCCGCTACAGCGTGCACCCGAAGCTGGAGCATTTCATGTTCCCCGTGGAC
CCGCCCTGTCCCACGGACAGAAACCGCTTGTTCGCCTCGCTGCCtggcag
ggggggcagggcggcggcggcggcggagggggaagggaccgggggggggt
ga

Synonyms

Publications