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Properties
| Property Name | Value |
|---|
| Product | Phosphorylated CTD interacting factor 1, WW domain protein |
| Orig transcript id | gnl|cribi|Naga_100114g9.2481.mrna |
| Orig protein id | gnl|cribi|Naga_100114g9.2481 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:899127..901500 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna983 ID=rna983|Name=rna983|organism=Nannochloropsis gaditana|type=mRNA|length=1062bp
TACCTGAACCGACTTTCTTAATGCATCTCTCACAGCTGTGTGTAGATCTA
GGTGATCCTATCCCCATTGTGGTCGCGTGATATGGGTACGACATTGGTGG
ATGAGCGCGGTTTGCCGATTAGCGCTTCTATCGAGCCCCATCAAGGCCAG
CATGTCGCAGTCGTACTCCGGTTCCTGAGAGCTCGAGGTACAGAGGGCGC
TTGCCTCTTGGGACCTCAGGAATGCGGAAAGAGCTCTCTAGCCTTCCAGC
TATGCTATACGATGGCGCAGCAGGATCCAAATCGACAGGCGATTTTCATT
CACCGGCATCGCGATTCACGCCACGTTGTCAAAACAACGCGACTCGTAGT
CGCTTCTTCTAGGCCTTCGTCAAGCCCGGCTGTTGAGCCACACCACCAAA
GCGAACAGACAGGGCCCAGCTGTGTAGGTCGAGCGAAGGGATGGGATTTT
TCTGTGCTGGATAATGTCTTCCTGAAGCGCTTCACGAGCTTCCAGGGTCT
CTGCTGGTACTTCGGAAGCCTTCATAACCAGCCAGACGCTTTATTGCCCT
CCGTGATTGTGGTGGACGATCTGGACCGCTACATAAGCACCACGAATCGA
GACGACGACTCGCTGAGCGCCTATTGTCAGGTCCTGAGTGTGATACGCGA
TGCAGCCGAGCACATCAGGCAGCGGACTGGACATCATTGCTCGCTGGTCG
TGACCATGGAGCAGGCAAGCCGGGGCCTTTTGCTTCCTCTGATCCGGCAG
TTGGGCATGGTCTTACGCATCAGTGGGGACCAAAATCACAAAGGCGGAGA
ATCAATGGCGATATGGAAGTTAGAAGAGGACAAGGAATCCCGGAATGGGG
ACACAGTGGGGGGAGAGGGAGCTGTCTCATGTTATTGTTGTCGTTATGAC
GCGACCGAGAAGGGGGTCCTCCGTGTGTTAGAGATGTCTGAGGAAAAACA
ATAACATACGTAAGACACTCTGCTTGCACACTGTCATACAGATTTTACAG
GTTTTATCTCGTGCCTTACTACGGACAAACAGAGATCGCATCGAGACGGA
AAGCATATAACA back to topprotein sequence of rna983 >rna983-protein ID=rna983-protein|Name=rna983|organism=Nannochloropsis gaditana|type=polypeptide|length=637bp
MDALLEEMYMAQRGGSTSYAHKDIKAPETEEGPEEDAGDNPTCAASSSTP
SLWRPEVKPPMDALHHAKTYNSAQNMMHQPSLSLEILRHDAIGTLTCFFL
NKVNRDLGMDLRVPLFERWLFSQRPTDGTGDPILPDPRLNNEHERAGRHL
LMRELIEGGASNDTAKRVIEQLNKTAVKLLCRIQRASASLNPPSVSLEAR
WQSLSKIYVHFDAGRGLYSLRHKSKTVTVNRRHYEKLRALHARFGGMSIN
RPGIDRSQGNLKHGKRERPGKSAEEERFFHLRVFLLLLRYSSLAGGTDRG
GGFQGAINEEAFDVLRRHLDCRMECFASPLNCMYARYCSAFQDTDACFGS
LGTFFNFRPRQGTYEANPPFSPCVIARMVDHMEDLLEATALPLGFVVVIP
AWQDGKGERTREDEEKGVTREAEEERPESTRVTASKGASMSREPNKRGAK
AIYKASAASWSRLRESSFCALHVLLRAQDHGYIEGGQHKTPTRFKTSFFD
TSVFFLQNAAAKRKWPASERMAEELKQACASKHEAETAARRRDQGLDQRT
ERGARLREGCEEDGEVPEASSESNAFEGEGGRGPVECATQQGSRPPSWKR
AGAPSSMLYQKDALSSSKKKRSARHEKRGSNSTAARS back to topmRNA from alignment at CM002456.1:899127..901500+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna983 ID=rna983|Name=rna983|organism=Nannochloropsis gaditana|type=mRNA|length=2374bp|location=Sequence derived from alignment at CM002456.1:899127..901500+ (Nannochloropsis gaditana)
aAGCCCCCCACGCAAGGAAGGTGAGCTGCCAGTGCGCAAATTCATCGACG
TTGCGCAGAACATGTGAGTTTTCACGCCTCTTATTGGCGTTCAATCGCCC
AAGCGTCCATCTCGTACCTAGACATCAAGAACAACCTCCTCACCTATctc
aggcctcctcccctattGCGGCAAAAAGCACAGGGCCGCAAATGGATGCG
TTGCTGGAAGAGATGTACATGGCACAGCGAGGAGGATCTACTAGTTATGC
ACACAAAGATATCAAGGCGCCAGAGACAGAAGAAGGCCCTGAAGAAGACG
CGGGCGACAATCCTACTTGTGCTGCATCGTCCTCGACTCCCTCTCTATGG
CGACCCGAAGTAAAGCCCCCGATGGACGCCTTGCACCACGCTAAAACCTA
TAATAGCGCCCAAAACATGATGCATCAGCCCAGTCTCAGCTTAGAGATAC
TCCGACACGACGCCATCGGTACTTTGACGTGTTTTTTCCTCAACAAGGTG
AACAGGGACCTGGGCATGGATTTGCGCGTGCCCCTCTTTGAACGCTGGCT
CTTCTCCCAGCGTCCCACTGATGGCACCGGGGATCCTATATTGCCAGACC
CGCGATTAAACAACGAACATGAGCGAGCTGGCCGACACTTGCTCATGCGA
GAGCtgatcgagggaggggctagCAACGATACGGCGAAGCGAGTGATAGA
GCAGTTGAATAAAACCGCGGTCAAGCTCTTATGTCGGATACAAAGGGCTT
CCGCGTCCCTCAATCCCCCTTCCGTATCTCTAGAGGCACGATGGCAGTCC
TTGTCTAAAATATATGTGCATTTCGACGCGGGACGTGGGCTCTACTCACT
CCGACACAAGTCGAAAACTGTGACAGTCAACCGAAGGCATTACGAGAAGC
TTCGAGCACTCCACGCCCGCTTTGGGGGAATGTCAATCAATAGGCCTGGG
ATCGATCGCTCTCAAGGCAACCTTAAGCACGGAAAACGAGAACGCCCGGG
AAAGAGCGCTGAAGAAGAGAGGTTCTTCCATCTgcgggtcttcctcctcc
tcttgcgctACAGCAGTCTGGCGGGGGGCACAGATCGCGGAGGGGGCTTT
CAAGGCGCCATTAACGAGGAAGCCTTCGACGTCCTACGCCGTCACCTGGA
TTGTCGGATGGAATGCTTCGCCTCTCCCCTCAACTGCATGTACGCCCGTT
ATTGCTCCGCCTTCCAGGACACGGATGCCTGCTTCGGGAGCTTGGGGACA
TTTTTCAATTTCCGCCCCCGGCAAGGAACCTACGAGGCCAACCCGCCTTT
CTCGCCCTGTGTCATCGCCCGCATGGTCGACCACATGGAGGACTTGCTCG
AGGCaaccgccctgcccctcggcTTCGTCGTGGTCATTCCCGCATGGCAg
gacggaaagggggagcggacaagggaggacgaggagaagggggttACTAG
AGAAGCAGAAGAAGAGCGCCCTGAATCGACGCGTGTGACCGCATCAAAGG
GTGCCAGCATGTCTAGGGAGCCGAACAAGAGGGGAGCCAAGGCCATCTAc
aaggcctcggcggcgtcGTGGAGCCGCCTCCGCGAGAGCTCGTTCTGCGC
CCTTCACGTCCTGCTCCGGGCGCAAGATCACGGGTACATCGAGGGCGGGC
AGCACAAGACGCCCACCCGATTCAAGACGTCCTTCTTTGACACCTCGGTC
TTCTTCTTGCAGAACGCGGCGGCAAAGAGGAAGTGGCCGGCCTCGGAGCG
CATGGCGGAAGAGCTGAAGCAGGCGTGCGCGTCCAAGCATGAGGCAGAGA
CGGCCGCTCGGCGGAGAGATCAAGGCCTAGATCAAAGGACGGAGCGTGGA
GCAAGGCTAAGGGAAGGGTGCGAAGAAGATGGCGAGGTACCAGAGGCGTC
GTCGGAGAGCAACGCttttgagggagagggaggcaggggtccAGTGGAGT
GCGCGACGCAGCAGGGATCACGCCCGCCTTCTTGGAAGAGGGCGGGTGCT
CCGAGTAGCATGTTGTATCAAAAGGATGCCTTGAGCTCgagcaaaaagaa
aagatcaGCGCGACATGAAAAGCGTGGCTCCAATAGCACAGCGGCAAGAA
GTTGATCTGTGATGCACTACGAAGAGACTTGTCGCCCAAAGGAACACCCC
AAAATATAATCTCCTCCCTGGAGCGTTGAGCTTCGAGTAAATGCACTCGG
GCTTCAAATTTAATTGGTACGATTTTTCAAAATAAGCTTTGCCGCTTCAT
TGTTCACGATTTTTTATGTACATGCTTgcagcttcctcgtcccagACCTC
AGCGTACTTCGCCTTAATATCGAACAAATTAGACTCGTGGACCTGATTAT
GTCGATCACCAACCGCATCCTCAA back to topCoding sequence (CDS) from alignment at CM002456.1:899127..901500+ >rna983 ID=rna983|Name=rna983|organism=Nannochloropsis gaditana|type=CDS|length=1914bp|location=Sequence derived from alignment at CM002456.1:899127..901500+ (Nannochloropsis gaditana)
ATGGATGCGTTGCTGGAAGAGATGTACATGGCACAGCGAGGAGGATCTAC
TAGTTATGCACACAAAGATATCAAGGCGCCAGAGACAGAAGAAGGCCCTG
AAGAAGACGCGGGCGACAATCCTACTTGTGCTGCATCGTCCTCGACTCCC
TCTCTATGGCGACCCGAAGTAAAGCCCCCGATGGACGCCTTGCACCACGC
TAAAACCTATAATAGCGCCCAAAACATGATGCATCAGCCCAGTCTCAGCT
TAGAGATACTCCGACACGACGCCATCGGTACTTTGACGTGTTTTTTCCTC
AACAAGGTGAACAGGGACCTGGGCATGGATTTGCGCGTGCCCCTCTTTGA
ACGCTGGCTCTTCTCCCAGCGTCCCACTGATGGCACCGGGGATCCTATAT
TGCCAGACCCGCGATTAAACAACGAACATGAGCGAGCTGGCCGACACTTG
CTCATGCGAGAGCtgatcgagggaggggctagCAACGATACGGCGAAGCG
AGTGATAGAGCAGTTGAATAAAACCGCGGTCAAGCTCTTATGTCGGATAC
AAAGGGCTTCCGCGTCCCTCAATCCCCCTTCCGTATCTCTAGAGGCACGA
TGGCAGTCCTTGTCTAAAATATATGTGCATTTCGACGCGGGACGTGGGCT
CTACTCACTCCGACACAAGTCGAAAACTGTGACAGTCAACCGAAGGCATT
ACGAGAAGCTTCGAGCACTCCACGCCCGCTTTGGGGGAATGTCAATCAAT
AGGCCTGGGATCGATCGCTCTCAAGGCAACCTTAAGCACGGAAAACGAGA
ACGCCCGGGAAAGAGCGCTGAAGAAGAGAGGTTCTTCCATCTgcgggtct
tcctcctcctcttgcgctACAGCAGTCTGGCGGGGGGCACAGATCGCGGA
GGGGGCTTTCAAGGCGCCATTAACGAGGAAGCCTTCGACGTCCTACGCCG
TCACCTGGATTGTCGGATGGAATGCTTCGCCTCTCCCCTCAACTGCATGT
ACGCCCGTTATTGCTCCGCCTTCCAGGACACGGATGCCTGCTTCGGGAGC
TTGGGGACATTTTTCAATTTCCGCCCCCGGCAAGGAACCTACGAGGCCAA
CCCGCCTTTCTCGCCCTGTGTCATCGCCCGCATGGTCGACCACATGGAGG
ACTTGCTCGAGGCaaccgccctgcccctcggcTTCGTCGTGGTCATTCCC
GCATGGCAggacggaaagggggagcggacaagggaggacgaggagaaggg
ggttACTAGAGAAGCAGAAGAAGAGCGCCCTGAATCGACGCGTGTGACCG
CATCAAAGGGTGCCAGCATGTCTAGGGAGCCGAACAAGAGGGGAGCCAAG
GCCATCTAcaaggcctcggcggcgtcGTGGAGCCGCCTCCGCGAGAGCTC
GTTCTGCGCCCTTCACGTCCTGCTCCGGGCGCAAGATCACGGGTACATCG
AGGGCGGGCAGCACAAGACGCCCACCCGATTCAAGACGTCCTTCTTTGAC
ACCTCGGTCTTCTTCTTGCAGAACGCGGCGGCAAAGAGGAAGTGGCCGGC
CTCGGAGCGCATGGCGGAAGAGCTGAAGCAGGCGTGCGCGTCCAAGCATG
AGGCAGAGACGGCCGCTCGGCGGAGAGATCAAGGCCTAGATCAAAGGACG
GAGCGTGGAGCAAGGCTAAGGGAAGGGTGCGAAGAAGATGGCGAGGTACC
AGAGGCGTCGTCGGAGAGCAACGCttttgagggagagggaggcaggggtc
cAGTGGAGTGCGCGACGCAGCAGGGATCACGCCCGCCTTCTTGGAAGAGG
GCGGGTGCTCCGAGTAGCATGTTGTATCAAAAGGATGCCTTGAGCTCgag
caaaaagaaaagatcaGCGCGACATGAAAAGCGTGGCTCCAATAGCACAG
CGGCAAGAAGTTGA back to top
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