EWM29688.1, cds972 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29688.1 vs. NCBI_GenBank
Match: gi|585112264|gb|EWM29688.1| (iron-sulfur cluster assembly enzyme mitochondrial-like protein [Nannochloropsis gaditana]) HSP 1 Score: 346.28 bits (887), Expect = 1.162e-120 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
Query: 1 MLSQAIRVNAAATASGFVRRLPRGWTGIAVTGSRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKKGTEARAAVA 168
MLSQAIRVNAAATASGFVRRLPRGWTGIAVTGSRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKKGTEARAAVA
Sbjct: 1 MLSQAIRVNAAATASGFVRRLPRGWTGIAVTGSRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKKGTEARAAVA 168
BLAST of EWM29688.1 vs. NCBI_GenBank
Match: gi|635361018|emb|CCI49898.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 238.039 bits (606), Expect = 5.214e-78 Identity = 110/138 (79.71%), Postives = 125/138 (90.58%), Query Frame = 0
Query: 23 RGWTGIAV-TGSRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKK 159
R TGIA+ T +R YHEN++DHYENPRNVGSLDK +VGTGLVGAPACGDVMKLQI+VDE+GKI +SKFKTFGCGSAIASSSVATEWLKG+TV+EC++IKNTDIA+HLKLPPVKLHCSMLAEDAIKAA+KD K+
Sbjct: 22 RNSTGIAINTIQQRQYHENVIDHYENPRNVGSLDKAAKDVGTGLVGAPACGDVMKLQIKVDENGKIVDSKFKTFGCGSAIASSSVATEWLKGRTVDECISIKNTDIASHLKLPPVKLHCSMLAEDAIKAAIKDYKKKQ 159
BLAST of EWM29688.1 vs. NCBI_GenBank
Match: gi|635362538|emb|CCI48707.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 237.654 bits (605), Expect = 7.651e-78 Identity = 110/138 (79.71%), Postives = 125/138 (90.58%), Query Frame = 0
Query: 23 RGWTGIAV-TGSRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKK 159
R TGIA+ T +R YHEN++DHYENPRNVGSLDK +VGTGLVGAPACGDVMKLQI+VDE+GKI +SKFKTFGCGSAIASSSVATEWLKG+TV+EC++IKNTDIA+HLKLPPVKLHCSMLAEDAIKAA+KD K+
Sbjct: 22 RNSTGIAINTIQQRQYHENVIDHYENPRNVGSLDKAAKDVGTGLVGAPACGDVMKLQIKVDENGKIVDSKFKTFGCGSAIASSSVATEWLKGRTVDECISIKNTDIASHLKLPPVKLHCSMLAEDAIKAAIKDYKKKQ 159
BLAST of EWM29688.1 vs. NCBI_GenBank
Match: gi|325185600|emb|CCA20082.1| (iron sulfur cluster assembly protein 1 putative [Albugo laibachii Nc14]) HSP 1 Score: 236.884 bits (603), Expect = 4.057e-77 Identity = 114/161 (70.81%), Postives = 133/161 (82.61%), Query Frame = 0
Query: 1 MLSQAIRVNAAATASGFVRRLPRGWTGIAV-TGSRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKKG 160
M Q ++ + A V RL R TG +V T +R YHEN++DHYENPRNVGSLDK D +VGTGLVGAPACGDVMKLQI+VDE+G+I +SKFKTFGCGSAIASSSVATEWLKG+TV+EC++IKNTDIA+HLKLPPVKLHCSMLAEDAIKAA+ D K+
Sbjct: 27 MSRQLLKKSQETLAKTTVLRL-RNSTGPSVNTIQQRQYHENVIDHYENPRNVGSLDKADKDVGTGLVGAPACGDVMKLQIKVDENGRIVDSKFKTFGCGSAIASSSVATEWLKGRTVDECISIKNTDIASHLKLPPVKLHCSMLAEDAIKAAINDYKQKQN 186
BLAST of EWM29688.1 vs. NCBI_GenBank
Match: gi|298712458|emb|CBJ33232.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 231.491 bits (589), Expect = 1.370e-75 Identity = 108/133 (81.20%), Postives = 120/133 (90.23%), Query Frame = 0
Query: 26 TGIAVTGSRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASK 158
+G AV RR+YH+NIV+HYENPRNVGS+DK D VGTGLVGAPACGDVMKLQI+VDE+G ITESKFKTFGCGSAIASSSVATEWLKG++V+E + IKNTDIA HLKLPPVKLHCSMLAEDAIKAA+KDL K
Sbjct: 4 SGAAVAHQRRSYHDNIVEHYENPRNVGSMDKKDKFVGTGLVGAPACGDVMKLQIKVDENGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDK 136
BLAST of EWM29688.1 vs. NCBI_GenBank
Match: gi|219121569|ref|XP_002181136.1| (iron-sulphur assembly protein isc [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407122|gb|EEC47059.1| iron-sulphur assembly protein isc [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 229.95 bits (585), Expect = 8.870e-75 Identity = 108/134 (80.60%), Postives = 121/134 (90.30%), Query Frame = 0
Query: 33 SRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKKGTEARAA 166
SRR YHENIV+HYENPRNVGSLDK D +VGTGLVGAPACGDVMKLQI+VDE+G ITESKFKTFGCGSAIASSSVATEW+KGKTV++ +AI+N DIAAHLKLPPVKLHCSMLAEDAIKAAV D K+ ++ + A
Sbjct: 26 SRRGYHENIVEHYENPRNVGSLDKNDESVGTGLVGAPACGDVMKLQIKVDENGMITESKFKTFGCGSAIASSSVATEWVKGKTVDDILAIQNADIAAHLKLPPVKLHCSMLAEDAIKAAVADWKVKQSSKKQEA 159
BLAST of EWM29688.1 vs. NCBI_GenBank
Match: gi|1214698452|gb|OWZ11469.1| (Iron sulfur cluster assembly protein 1 [Phytophthora megakarya]) HSP 1 Score: 229.565 bits (584), Expect = 1.190e-74 Identity = 106/139 (76.26%), Postives = 118/139 (84.89%), Query Frame = 0
Query: 21 LPRGWTGIAVTGSRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKK 159
L R T G RTYHEN++DHYENPRNVG++DK +VGTGLVGAPACGDVMKLQI+VDE G I +SKFKTFGCGSAIASSSVATEWLKGK+VEEC+ IKNTDIA+HLKLPPVKLHCSMLAEDAIKAA+ D K+
Sbjct: 13 LARTTTAAPAFGQTRTYHENVIDHYENPRNVGAMDKNAKDVGTGLVGAPACGDVMKLQIQVDEHGTIVDSKFKTFGCGSAIASSSVATEWLKGKSVEECLKIKNTDIASHLKLPPVKLHCSMLAEDAIKAAISDYKKKQ 151
BLAST of EWM29688.1 vs. NCBI_GenBank
Match: gi|1072235739|gb|OEU20467.1| (FeS cluster assembly scaffold IscU [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 229.565 bits (584), Expect = 1.660e-74 Identity = 109/144 (75.69%), Postives = 125/144 (86.81%), Query Frame = 0
Query: 19 RRLPRGWTGIAVTGSRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKKGTE 162
RR + IA + R+YHENIV+HYENPRNVGSLDK + +VGTGLVGAPACGDVMKLQI+VD+DG ITESKFKTFGCGSAIA+SSVATEW+KGK V+E +AIKN+DIAAHLKLPPVKLHCSMLAEDAIKAAVKD +K+ +
Sbjct: 15 RRTTVFGSSIANSPFARSYHENIVEHYENPRNVGSLDKNELSVGTGLVGAPACGDVMKLQIKVDDDGNITESKFKTFGCGSAIAASSVATEWVKGKNVDEVLAIKNSDIAAHLKLPPVKLHCSMLAEDAIKAAVKDWKAKQAEQ 158
BLAST of EWM29688.1 vs. NCBI_GenBank
Match: gi|1210526224|dbj|GAX15142.1| (nitrogen fixation protein NifU and related proteins [Fistulifera solaris]) HSP 1 Score: 228.794 bits (582), Expect = 3.101e-74 Identity = 107/134 (79.85%), Postives = 119/134 (88.81%), Query Frame = 0
Query: 34 RRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKKGTEARAAV 167
RR YHENIV+HYENPRNVGSLDK D +VGTGLVGAPACGDVMKLQI+VDE+G ITESKFKTFGCGSAIASSSVATEW+KGK+V+E ++IKN+DIA+HLKLPPVKLHCSMLAEDAIKAAVKD K + V
Sbjct: 27 RRGYHENIVEHYENPRNVGSLDKNDKSVGTGLVGAPACGDVMKLQIKVDENGIITESKFKTFGCGSAIASSSVATEWVKGKSVDEVLSIKNSDIASHLKLPPVKLHCSMLAEDAIKAAVKDWKEKSAAGVKVQV 160
BLAST of EWM29688.1 vs. NCBI_GenBank
Match: gi|1210517334|dbj|GAX23591.1| (nitrogen fixation protein NifU and related proteins [Fistulifera solaris]) HSP 1 Score: 228.409 bits (581), Expect = 3.819e-74 Identity = 106/125 (84.80%), Postives = 117/125 (93.60%), Query Frame = 0
Query: 34 RRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASK 158
RR YHENIV+HYENPRNVGSLDK D +VGTGLVGAPACGDVMKLQI+VDE+G ITESKFKTFGCGSAIASSSVATEW+KGK+V+E ++IKN+DIA+HLKLPPVKLHCSMLAEDAIKAAVKD K
Sbjct: 27 RRGYHENIVEHYENPRNVGSLDKNDKSVGTGLVGAPACGDVMKLQIKVDENGIITESKFKTFGCGSAIASSSVATEWVKGKSVDEVLSIKNSDIASHLKLPPVKLHCSMLAEDAIKAAVKDWKEK 151 The following BLAST results are available for this feature:
BLAST of EWM29688.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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