rna973, rna973 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna973
Unique Name	rna973
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2161
Alignment location	CM002456.1:868156..869771 +

Link to JBrowse

Properties


Property Name	Value
Product	iron-sulfur cluster assembly enzyme mitochondrial-like protein
Orig transcript id	gnl\|cribi\|Naga_100114g19.2473.mrna
Orig protein id	gnl\|cribi\|Naga_100114g19.2473
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:868156..869771 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100114g19	gene936	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna973	rna973-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29688.1	cds972	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:868156..869771+
coding sequence from alignment at CM002456.1:868156..869771+

mRNA sequence

>rna973 ID=rna973|Name=rna973|organism=Nannochloropsis gaditana|type=mRNA|length=2161bp
CCAGTCCAGCCCCGGGGAAGCCTGCGGACGAATCCACTTGCGGTAGCCGC
CGCGTTGACGCGAATAGCCTGCGAAAGCATCTCGTCGCGGATTGACGACT
CTTTAAAACGTTGATCTGTGATTCAACAGGATATGTGCTCCAATGATATA
AAGGATGGTGGTTTTTATTTGCGCGATGTGGACAGCAGAAGAGGAGAGCC
TTGAGGTGCACTCTCATCCTCCTCGCCTCCATGTCCGGCTCCCTCCTTAC
ACGCACTTGCCCGGCCACCACCGCGCACGGGTGAGGCAGCAGTGGTTGGC
GCAGGTGTCTCAGGCTCTCTTCGCTGCCTGACCACGCATGCAACGCCCGC
ATCACACCTGCCTGGCGGGGCGGGGCTGGACATGGACGGAGAGAGCGCTC
ACCTCCGTCGCCCCCGCAGGAAGCGACCTCCCCCCTTGCTGGCCCCTGGG
AACCCGCTTTAGACCGTCTCCCGGCGTCCGTCTCAAGGACGGGGAGGACA
AGCTGGGATCCAAATCAGTGATAGTGAGTAAAAAAATGTCGATAGGCGCA
AGACAAAGTGTATGGCACAGGCATTTCTCAGTATTGTGGGGCTTTATGAT
CTTCACGGTTCTGACTTTGCTGCAACAAGGAGCATGGGGCTTTCTAGCTC
CACCACGGACAACGCTGAAGGATTCATGTGCAATAAGGGCAGGGAAAAGC
TTAGTGATGATGTCAGCGGAGGGCATGGGAAAAGTAGCTGTCGTGGTGGG
TTATGAGGACGGGACAGCTCAGCTGATTGCGGCGAAGATGGCAACCACAC
TTGAAGGCGTCAGAGTGCGCGCCATACTCGAAACAGGGACGAGCGACCCC
GTCCCAGCTATGCTGCTGCCCCCAAACGTACAAGTCACACGCAAAAGCCT
GGACTCTATTGGCTCCGATGATTTGGCTGGAGCCTCGGTTGCCCTCGTCA
GCCTTGATAAGGGTCCGAAGGAGGAGGCAGGCGCAGACCCTAGCAACTAC
CTGCCGCTACCTACAATACTGTCGAACATCGGGCCGCTGACCAAGGTTGT
AATAGCCGCGTACGCCAATGACACTGCAGCAGCGGGAAGGGTTGGAGGGG
GGTTGAATCTGAACATCTTCGCGAGAGGCGTGGACCCGAAGGAGGTCGTG
GAGGCCGCGAGAAGTTCCGGCCCCGGGTCGGCTGTCATTGTCTTGGCACA
GCACGGGCGTCTATTCGGACCCCCCGCTCTTGCAACGAGTCCCAATGCCG
CCGTACAAGTCTTGCCTTTCGTGGGAGGGCCGCTGCAAAAACCTGTGCTG
GAGGAGTCGTTCGCGAAGCAAAACATTTTGCTGGCTCTGGGAAGCTCTCT
CTCACGAAATCGAGACGCGGCAACCATGCGATCGGCCCTTGCTGAGAGCA
TGATTCGTGCATCGGGGCTTATTGATAGCATCGGAGATTTTTCTGTGGTG
AGTCTGGAGGGACAAGCGCCAAGCGCGGGCGACTGGGAGCAACTGATGGC
GGGTCTGGACACGCGAGGGGGCGTGACTGTGTTCGAGAAGGTCCTGGCTG
CCAGCGAGCGGGTGGATTTGAATGTGTTGCAGGAGTGGCTGGTGAATGAT
TTCGGTGCGGGCCTGTCGACGCTCGCCATCTCTCGCGTGCTCAACTCGCC
CAAGCCCTCCATTGTAATCAACACGGCCGTCGGCAGCGACATCGTCTGGC
AGTTCGTCGGGAAAGACCTGAAGGTGCAGGGCTCTGGTCGGTGGTCCATT
CAGTTGGACAGCGAGGCCAGAACGATCAAAATCTTGCGAGAAAATGCCGA
GGGGAAAATGTTGACTGAGGCTCTGCCGGGAGAGGAGGAATTGCTGCAGC
GCTTTTCAGCAGCCATCAATCGGTTGGTCTATTCCCGCAAGCTTTCGAAA
CGGAGATGATGCGTGAAACCAGAATCTTTAAAGCATACACTTTTGAGGTC
TTGCTGGGCTGAAAGCCTGGCAAACGGCCATCCCCCGTGCGCTATAAGAA
CTAAGAGACCTTCGAGTCCTGTTGACCCCAACACTGCTCTGTATGCCCGC
GAAGGCAAGATAAAATGCTGTTGTTTTTTCCCATTTTTCTTTTTTTTAAA
ACTCTAATTTGTTATGGTTAAGACGACACTCTGTGATGCTTTTGCGCTGT
CAATGTTTCCC

protein sequence of rna973

>rna973-protein ID=rna973-protein|Name=rna973|organism=Nannochloropsis gaditana|type=polypeptide|length=168bp
MLSQAIRVNAAATASGFVRRLPRGWTGIAVTGSRRTYHENIVDHYENPRN
VGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSA
IASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKA
AVKDLASKKGTEARAAVA

mRNA from alignment at CM002456.1:868156..869771+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna973 ID=rna973|Name=rna973|organism=Nannochloropsis gaditana|type=mRNA|length=1616bp|location=Sequence derived from alignment at CM002456.1:868156..869771+ (Nannochloropsis gaditana)
TCTCTCCGTCCATGTccagccccgccccgccaGGCAGGTGTGATGCGGGC
GTTGCATGCGTGGTCAGGCAGCGAAGAGAGCCTGAGACACCTGCGCCAAC
CACTGCTGCCTCACCCGTGCGCGGTGGTGGCCGGGCAAGTGCGTGTAAGG
AGGGAGCCGGAcatggaggcgaggaggatgagagtgCACCTCAAGgctct
cctcttctgctGTCCACATCGCGCAAATAAAAACCACCATCCTTTATATC
ATTGGAGCACATATCCTGTTGAATCACAGATCAACGTTTTAAAGAGTCGT
CAATCCGCGACGAGATGCTTTCGCAGGCTATTCGCGTCAACGCGGCGGCT
ACCGCAAGTGGATTCGTCCGCAGGCTTCCCCGGGGCTGGACTGGCATCGT
ACGTACTGAGAGCATTAGCCGGAGAGTCGGCACCGATCGATTCCGCTTGT
TTGTTATCTTTACAGCTCAATTCATGTTGTGATGCGGGTCCTTTTTGTCT
CTCGCCTGACGTCAACCCTCTGCGCTCCCTTCGAAACTTGTAACTTCTCT
CAGGCCGTGACaggctcgaggaggacgtaTCATGAGAACATCGTAGACCA
CTACGAAAACCCGCGCAATGTTGGTTCGCTAGACAAAACTGATCCGAACG
TGGGCACGGTAGGTGAATGTGCCGAAGAGGTTTTTAATATTCTCGTATAG
TAACATCTTGATACATGCCTCCAAAGGGCCTTGTGGGTGCGCCAGCCTGC
GGCGATGTCATGAAACTTCAGATCCGGGTAGACGAGGATGGGAAAATCAC
TGAGAGCAAATTTAAGACCTTTGGATGTGGCTCGGCCATAGCGAGCAGCT
CTGTGGCGACCGAGTGGCTGAAGGGAAAAACAGTGGAGGAGTGCATGGCC
ATCAAGAATACGGACATTGCCGCTCACCTCAAGCTCCCTCCTGTGAAGCT
TCATTGCTCCATGCTTGCCGAGGATGCGATCAAGGCAGCTGTCAAGGATT
TGGCTTccaagaaagggacggaagcTAGGGCCGCTGTTGCGTAGAGGACA
GCCAGGATGCGAGAGATACTTGCTTGACCTTGATGAGCGATGAAATACGT
GAAAAGAAGGTACTTGTTTACCATTTGGAGTAAGCTTGGATGTTGTCATC
CCGATTACATGAGAGACAAATTCTGACGCAAAGTTTGGAAGGCCACaaag
gagagaaggtgaTCGCcttgggggggagaggcaggagggcgagggaggat
tgTAAGTAAGCAAAGGAAGCAAAATGCGACGACTCACGCCGCTCGTGTGG
GCTGTGGCCATGCTCAGCTCGGGAAAGTGTTTCTTTCACGGTGTGGGCAA
GTGTCTGGGCGCTGTCACCCTCGGGTCTGCCAGGACCGGGCCCAGTGATG
CACGGCGTACGCCACTTCCGGCACCGCGCCGGCAGCAGGCGGGCTGGGAG
TGGCGACCGGTCGGTTGGGAATGGGGTAAAACCAGACAGGCGGGGCCAGC
AGGACGATgcccacctcgtccacctgaCCCTGCTGCAgcaccaaggccgc
caccccCCGTGTGAAGAGCCCCGGACCCGTGGCCTCGATCGTGACGaacg
cctccagctcccgtGC

Coding sequence (CDS) from alignment at CM002456.1:868156..869771+

>rna973 ID=rna973|Name=rna973|organism=Nannochloropsis gaditana|type=CDS|length=1521bp|location=Sequence derived from alignment at CM002456.1:868156..869771+ (Nannochloropsis gaditana)
ATGCTTTCGCAGGCTATTCGCGTCAACGCGGCGGCTACCGCAAGTGGATT
CGTCCGCAGGCTTCCCCGGGGCTGGACTGGCATCGCCGTGACaggctcga
ggaggacgtaTCATGAGAACATCGTAGACCACTACGAAAACCCGCGCAAT
GTTGGTTCGCTAGACAAAACTGATCCGAACGTGGGCACGGGCCTTGTGGG
TGCGCCAGCCTGCGGCGATGTCATGAAACTTCAGATCCGGGTAGACGAGG
ATGGGAAAATCACTGAGAGCAAATTTAAGACCTTTGGATGTGGCTCGGCC
ATAGCGAGCAGCTCTGTGGCGACCGAGTGGCTGAAGGGAAAAACAGTGGA
GGAGTGCATGGCCATCAAGAATACGGACATTGCCGCTCACCTCAAGCTCC
CTCCTGTGAAGCTTCATTGCTCCATGCTTGCCGAGGATGCGATCAAGGCA
GCTGTCAAGGATTTGGCTTccaagaaagggacggaagcTAGGGCCGCTGT
TGCGTAGATGCTTTCGCAGGCTATTCGCGTCAACGCGGCGGCTACCGCAA
GTGGATTCGTCCGCAGGCTTCCCCGGGGCTGGACTGGCATCGCCGTGACa
ggctcgaggaggacgtaTCATGAGAACATCGTAGACCACTACGAAAACCC
GCGCAATGTTGGTTCGCTAGACAAAACTGATCCGAACGTGGGCACGGGCC
TTGTGGGTGCGCCAGCCTGCGGCGATGTCATGAAACTTCAGATCCGGGTA
GACGAGGATGGGAAAATCACTGAGAGCAAATTTAAGACCTTTGGATGTGG
CTCGGCCATAGCGAGCAGCTCTGTGGCGACCGAGTGGCTGAAGGGAAAAA
CAGTGGAGGAGTGCATGGCCATCAAGAATACGGACATTGCCGCTCACCTC
AAGCTCCCTCCTGTGAAGCTTCATTGCTCCATGCTTGCCGAGGATGCGAT
CAAGGCAGCTGTCAAGGATTTGGCTTccaagaaagggacggaagcTAGGG
CCGCTGTTGCGTAGATGCTTTCGCAGGCTATTCGCGTCAACGCGGCGGCT
ACCGCAAGTGGATTCGTCCGCAGGCTTCCCCGGGGCTGGACTGGCATCGC
CGTGACaggctcgaggaggacgtaTCATGAGAACATCGTAGACCACTACG
AAAACCCGCGCAATGTTGGTTCGCTAGACAAAACTGATCCGAACGTGGGC
ACGGGCCTTGTGGGTGCGCCAGCCTGCGGCGATGTCATGAAACTTCAGAT
CCGGGTAGACGAGGATGGGAAAATCACTGAGAGCAAATTTAAGACCTTTG
GATGTGGCTCGGCCATAGCGAGCAGCTCTGTGGCGACCGAGTGGCTGAAG
GGAAAAACAGTGGAGGAGTGCATGGCCATCAAGAATACGGACATTGCCGC
TCACCTCAAGCTCCCTCCTGTGAAGCTTCATTGCTCCATGCTTGCCGAGG
ATGCGATCAAGGCAGCTGTCAAGGATTTGGCTTccaagaaagggacggaa
gcTAGGGCCGCTGTTGCGTAG

Synonyms

Publications