EWM29688.1, cds972 (CDS) Nannochloropsis gaditana

Overview
NameEWM29688.1
Unique Namecds972
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:868470..868553 +
Alignment locationCM002456.1:868709..868813 +
Alignment locationCM002456.1:868882..869199 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29688.1
Productiron-sulfur cluster assembly enzyme mitochondrial-like protein
Orig transcript idgnl|cribi|Naga_100114g19.2473.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:868470..868553 +
CM002456.1supercontigCM002456.1:868709..868813 +
CM002456.1supercontigCM002456.1:868882..869199 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005506iron ion binding
GO:0051536iron-sulfur cluster binding
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0016043cellular component organization
GO:0016226iron-sulfur cluster assembly
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR011339ISC_FeS_clus_asmbl_IscU
IPR002871NIF_FeS_clus_asmbl_NifU_N
Homology
BLAST of EWM29688.1 vs. NCBI_GenBank
Match: gi|585112264|gb|EWM29688.1| (iron-sulfur cluster assembly enzyme mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 346.28 bits (887), Expect = 1.162e-120
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
Query:    1 MLSQAIRVNAAATASGFVRRLPRGWTGIAVTGSRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKKGTEARAAVA 168
            MLSQAIRVNAAATASGFVRRLPRGWTGIAVTGSRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKKGTEARAAVA
Sbjct:    1 MLSQAIRVNAAATASGFVRRLPRGWTGIAVTGSRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKKGTEARAAVA 168          
BLAST of EWM29688.1 vs. NCBI_GenBank
Match: gi|635361018|emb|CCI49898.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 238.039 bits (606), Expect = 5.214e-78
Identity = 110/138 (79.71%), Postives = 125/138 (90.58%), Query Frame = 0
Query:   23 RGWTGIAV-TGSRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKK 159
            R  TGIA+ T  +R YHEN++DHYENPRNVGSLDK   +VGTGLVGAPACGDVMKLQI+VDE+GKI +SKFKTFGCGSAIASSSVATEWLKG+TV+EC++IKNTDIA+HLKLPPVKLHCSMLAEDAIKAA+KD   K+
Sbjct:   22 RNSTGIAINTIQQRQYHENVIDHYENPRNVGSLDKAAKDVGTGLVGAPACGDVMKLQIKVDENGKIVDSKFKTFGCGSAIASSSVATEWLKGRTVDECISIKNTDIASHLKLPPVKLHCSMLAEDAIKAAIKDYKKKQ 159          
BLAST of EWM29688.1 vs. NCBI_GenBank
Match: gi|635362538|emb|CCI48707.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 237.654 bits (605), Expect = 7.651e-78
Identity = 110/138 (79.71%), Postives = 125/138 (90.58%), Query Frame = 0
Query:   23 RGWTGIAV-TGSRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKK 159
            R  TGIA+ T  +R YHEN++DHYENPRNVGSLDK   +VGTGLVGAPACGDVMKLQI+VDE+GKI +SKFKTFGCGSAIASSSVATEWLKG+TV+EC++IKNTDIA+HLKLPPVKLHCSMLAEDAIKAA+KD   K+
Sbjct:   22 RNSTGIAINTIQQRQYHENVIDHYENPRNVGSLDKAAKDVGTGLVGAPACGDVMKLQIKVDENGKIVDSKFKTFGCGSAIASSSVATEWLKGRTVDECISIKNTDIASHLKLPPVKLHCSMLAEDAIKAAIKDYKKKQ 159          
BLAST of EWM29688.1 vs. NCBI_GenBank
Match: gi|325185600|emb|CCA20082.1| (iron sulfur cluster assembly protein 1 putative [Albugo laibachii Nc14])

HSP 1 Score: 236.884 bits (603), Expect = 4.057e-77
Identity = 114/161 (70.81%), Postives = 133/161 (82.61%), Query Frame = 0
Query:    1 MLSQAIRVNAAATASGFVRRLPRGWTGIAV-TGSRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKKG 160
            M  Q ++ +    A   V RL R  TG +V T  +R YHEN++DHYENPRNVGSLDK D +VGTGLVGAPACGDVMKLQI+VDE+G+I +SKFKTFGCGSAIASSSVATEWLKG+TV+EC++IKNTDIA+HLKLPPVKLHCSMLAEDAIKAA+ D   K+ 
Sbjct:   27 MSRQLLKKSQETLAKTTVLRL-RNSTGPSVNTIQQRQYHENVIDHYENPRNVGSLDKADKDVGTGLVGAPACGDVMKLQIKVDENGRIVDSKFKTFGCGSAIASSSVATEWLKGRTVDECISIKNTDIASHLKLPPVKLHCSMLAEDAIKAAINDYKQKQN 186          
BLAST of EWM29688.1 vs. NCBI_GenBank
Match: gi|298712458|emb|CBJ33232.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 231.491 bits (589), Expect = 1.370e-75
Identity = 108/133 (81.20%), Postives = 120/133 (90.23%), Query Frame = 0
Query:   26 TGIAVTGSRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASK 158
            +G AV   RR+YH+NIV+HYENPRNVGS+DK D  VGTGLVGAPACGDVMKLQI+VDE+G ITESKFKTFGCGSAIASSSVATEWLKG++V+E + IKNTDIA HLKLPPVKLHCSMLAEDAIKAA+KDL  K
Sbjct:    4 SGAAVAHQRRSYHDNIVEHYENPRNVGSMDKKDKFVGTGLVGAPACGDVMKLQIKVDENGVITESKFKTFGCGSAIASSSVATEWLKGRSVDESLKIKNTDIAGHLKLPPVKLHCSMLAEDAIKAAIKDLQDK 136          
BLAST of EWM29688.1 vs. NCBI_GenBank
Match: gi|219121569|ref|XP_002181136.1| (iron-sulphur assembly protein isc [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407122|gb|EEC47059.1| iron-sulphur assembly protein isc [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 229.95 bits (585), Expect = 8.870e-75
Identity = 108/134 (80.60%), Postives = 121/134 (90.30%), Query Frame = 0
Query:   33 SRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKKGTEARAA 166
            SRR YHENIV+HYENPRNVGSLDK D +VGTGLVGAPACGDVMKLQI+VDE+G ITESKFKTFGCGSAIASSSVATEW+KGKTV++ +AI+N DIAAHLKLPPVKLHCSMLAEDAIKAAV D   K+ ++ + A
Sbjct:   26 SRRGYHENIVEHYENPRNVGSLDKNDESVGTGLVGAPACGDVMKLQIKVDENGMITESKFKTFGCGSAIASSSVATEWVKGKTVDDILAIQNADIAAHLKLPPVKLHCSMLAEDAIKAAVADWKVKQSSKKQEA 159          
BLAST of EWM29688.1 vs. NCBI_GenBank
Match: gi|1214698452|gb|OWZ11469.1| (Iron sulfur cluster assembly protein 1 [Phytophthora megakarya])

HSP 1 Score: 229.565 bits (584), Expect = 1.190e-74
Identity = 106/139 (76.26%), Postives = 118/139 (84.89%), Query Frame = 0
Query:   21 LPRGWTGIAVTGSRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKK 159
            L R  T     G  RTYHEN++DHYENPRNVG++DK   +VGTGLVGAPACGDVMKLQI+VDE G I +SKFKTFGCGSAIASSSVATEWLKGK+VEEC+ IKNTDIA+HLKLPPVKLHCSMLAEDAIKAA+ D   K+
Sbjct:   13 LARTTTAAPAFGQTRTYHENVIDHYENPRNVGAMDKNAKDVGTGLVGAPACGDVMKLQIQVDEHGTIVDSKFKTFGCGSAIASSSVATEWLKGKSVEECLKIKNTDIASHLKLPPVKLHCSMLAEDAIKAAISDYKKKQ 151          
BLAST of EWM29688.1 vs. NCBI_GenBank
Match: gi|1072235739|gb|OEU20467.1| (FeS cluster assembly scaffold IscU [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 229.565 bits (584), Expect = 1.660e-74
Identity = 109/144 (75.69%), Postives = 125/144 (86.81%), Query Frame = 0
Query:   19 RRLPRGWTGIAVTGSRRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKKGTE 162
            RR     + IA +   R+YHENIV+HYENPRNVGSLDK + +VGTGLVGAPACGDVMKLQI+VD+DG ITESKFKTFGCGSAIA+SSVATEW+KGK V+E +AIKN+DIAAHLKLPPVKLHCSMLAEDAIKAAVKD  +K+  +
Sbjct:   15 RRTTVFGSSIANSPFARSYHENIVEHYENPRNVGSLDKNELSVGTGLVGAPACGDVMKLQIKVDDDGNITESKFKTFGCGSAIAASSVATEWVKGKNVDEVLAIKNSDIAAHLKLPPVKLHCSMLAEDAIKAAVKDWKAKQAEQ 158          
BLAST of EWM29688.1 vs. NCBI_GenBank
Match: gi|1210526224|dbj|GAX15142.1| (nitrogen fixation protein NifU and related proteins [Fistulifera solaris])

HSP 1 Score: 228.794 bits (582), Expect = 3.101e-74
Identity = 107/134 (79.85%), Postives = 119/134 (88.81%), Query Frame = 0
Query:   34 RRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASKKGTEARAAV 167
            RR YHENIV+HYENPRNVGSLDK D +VGTGLVGAPACGDVMKLQI+VDE+G ITESKFKTFGCGSAIASSSVATEW+KGK+V+E ++IKN+DIA+HLKLPPVKLHCSMLAEDAIKAAVKD   K     +  V
Sbjct:   27 RRGYHENIVEHYENPRNVGSLDKNDKSVGTGLVGAPACGDVMKLQIKVDENGIITESKFKTFGCGSAIASSSVATEWVKGKSVDEVLSIKNSDIASHLKLPPVKLHCSMLAEDAIKAAVKDWKEKSAAGVKVQV 160          
BLAST of EWM29688.1 vs. NCBI_GenBank
Match: gi|1210517334|dbj|GAX23591.1| (nitrogen fixation protein NifU and related proteins [Fistulifera solaris])

HSP 1 Score: 228.409 bits (581), Expect = 3.819e-74
Identity = 106/125 (84.80%), Postives = 117/125 (93.60%), Query Frame = 0
Query:   34 RRTYHENIVDHYENPRNVGSLDKTDPNVGTGLVGAPACGDVMKLQIRVDEDGKITESKFKTFGCGSAIASSSVATEWLKGKTVEECMAIKNTDIAAHLKLPPVKLHCSMLAEDAIKAAVKDLASK 158
            RR YHENIV+HYENPRNVGSLDK D +VGTGLVGAPACGDVMKLQI+VDE+G ITESKFKTFGCGSAIASSSVATEW+KGK+V+E ++IKN+DIA+HLKLPPVKLHCSMLAEDAIKAAVKD   K
Sbjct:   27 RRGYHENIVEHYENPRNVGSLDKNDKSVGTGLVGAPACGDVMKLQIKVDENGIITESKFKTFGCGSAIASSSVATEWVKGKSVDEVLSIKNSDIASHLKLPPVKLHCSMLAEDAIKAAVKDWKEK 151          
The following BLAST results are available for this feature:
BLAST of EWM29688.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112264|gb|EWM29688.1|1.162e-120100.00iron-sulfur cluster assembly enzyme mitochondrial-... [more]
gi|635361018|emb|CCI49898.1|5.214e-7879.71unnamed protein product [Albugo candida][more]
gi|635362538|emb|CCI48707.1|7.651e-7879.71unnamed protein product [Albugo candida][more]
gi|325185600|emb|CCA20082.1|4.057e-7770.81iron sulfur cluster assembly protein 1 putative [A... [more]
gi|298712458|emb|CBJ33232.1|1.370e-7581.20conserved unknown protein [Ectocarpus siliculosus][more]
gi|219121569|ref|XP_002181136.1|8.870e-7580.60iron-sulphur assembly protein isc [Phaeodactylum t... [more]
gi|1214698452|gb|OWZ11469.1|1.190e-7476.26Iron sulfur cluster assembly protein 1 [Phytophtho... [more]
gi|1072235739|gb|OEU20467.1|1.660e-7475.69FeS cluster assembly scaffold IscU [Fragilariopsis... [more]
gi|1210526224|dbj|GAX15142.1|3.101e-7479.85nitrogen fixation protein NifU and related protein... [more]
gi|1210517334|dbj|GAX23591.1|3.819e-7484.80nitrogen fixation protein NifU and related protein... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna973rna973Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications