rna969, rna969 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna969
Unique Name	rna969
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1896
Alignment location	CM002456.1:859390..861840 +

Link to JBrowse

Properties


Property Name	Value
Product	protein phosphatase 1 regulatory subunit 14d
Orig transcript id	gnl\|cribi\|Naga_100124g17.8337.mrna
Orig protein id	gnl\|cribi\|Naga_100124g17.8337
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:859390..861840 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100124g17	gene932	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna969	rna969-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29716.1	cds969	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:859390..861840+
coding sequence from alignment at CM002456.1:859390..861840+

mRNA sequence

>rna969 ID=rna969|Name=rna969|organism=Nannochloropsis gaditana|type=mRNA|length=1896bp
ATGAACGACCGCCTACCAAAACACACACGGTCGGCCTTGATACTCTTGGC
TATTTTGTGTACTGTGAAGGGATCCCCACACCTTGCTTTACAGCCATGTG
GCGCCCTACAAGCTTCCCTTGCGTTTTCCCGCCCCTCTGCTCGAGACGCC
TCGACCTCCTCCCTGCCAAGCCCCTGTGCGCACAGGACACGCCAAAGAAG
ATATGGAGAACAACCTGCCTTCCCTGTGTGGATGCAGTCATCAGACAGCT
TGGAGATATCTGAAGCAGCCCAGCAGCATAAAGTGGCAAGAATAAGAAAA
TTTTCACCAGGACCACTCGTGCCAGCCGCCGATGGAGAAAGCGCCACACC
ACAGGCAATTAATGTAGTCTTGACGCATGCCATCGCCGACTTCGACTCTC
TTGCCGCGGCAGTTGGACTTGCAAAATACTGGAGCCACCAAAATCCAGAA
ACCGAGGCCTACGTGTGCATGCCGCAGGGGGCGCATCCGTCCGTGGAGGC
CTTCCTGGCCTTGCACAGCGTGCTCTTCCCGCTCCGGGCCCTGGGCACCA
TCGACCCGAGCCACGTCCACAAGCTCGGCGTAGTGGATGCGTCCACCAAA
GATAGGCTGGGAGCGGGCCAGGGCCTGTTGGCGTCGGCGCGAGAGGTGCA
TGTGTTCGACCACCATGCGATGAAGGTCCCGGACATCGAGGCTACTGCCC
TCAACCTGGAGGACGTCGGGTCCGTGACAACCATGGTCGTTGAGCGTCTC
CGAGAGGCTGACGTAAATATCACAGACGCGGAAGCCACCCTCCTGGCCAT
CGGCATCCACGCGGACACCGGGTCGATGACCTACGACTGCACGACGGTGA
GGGACGTCGAGGCGCTGGCGTGGGTGATGCGGCACGGGGCCAGACAGCCA
GTCATAGCGGAGTTCTGCCACCAGCGATTGACGCAACACCAGCAGCACTT
CCTCTCCGAGTCGTTCGTGCGGCTGAACACGACGCTCTACGAGGGCGTGA
ACATCGGGACCGTGGTTGTGGACTGCCAGGAGTACGTGGGCGGGCTCGCC
CGTGTGGCGCAGCATGTGCTTGAGCTCACGTCCTGCGACGTGCTTGTTTG
GGGAGGCCTTTATGTGCAGGGTTCTGGTCGAAAGCAAACGCGACGTCTGG
TGTTGATCGGGCGGGCCCGCAGCGGCGTAAACTTTGTCAACTTCGACGAG
ATTTTTAAGCCCCTCGGTGGAGGCGGACACATGAAGGCTGCGGCAGCAAA
TATAAAGTTTGGGGAAGACCCTGCTTTTGCACAGGGTGCGGAGGAAGCTG
TTATGAAGGACGTAGTCGAGAGCTTAAAGCGACAGGTTGCTAGCCGGCAA
GATTTTAAATTGGCGAAGGACATCATGAGCTCGCCAGTCTTGACAGTCTA
CCGCGACACGACCATGGCTCAGGTCGCACAGCTCCTACGCAAGTATAACA
TACATGCGGTGCCTGTGGTAGGCGCAAACGAGGCTAGAGCGCCTCAAAGG
CCCGAAGAGGCAGCAATTGTGCGGGGAGTGGTCACGGACGTAGAGGTGCT
GAAAGCATTCAAAGCTGGAAAAATGGAGTCTCCAGTGTCTGGATGGCTGC
TGAAAAAAATTGGGGCGGTAGACGTCGATACCCCAGTGGATCAGGTGAAG
CGCGTGATGGCTGAGAACGACGGAAGAGACGTGTTGGTCATGGACCGCCA
AGGGAAGCTTGTGGGACTCATATCGCGCACCGATATCCTGCAGAGTTACC
AGTTTTATTCCGTCGGATCGTTTGCACCTAAGGAAGCATTTTGCGGGAAA
GAACTTGCGACAGCCGTACTGCAGGCAGGAGAAGTAGTAAAAGTTGAACA
TTGCACCACATGCTCAGCCCACACGGACTGTCGTGATTTTAGATAA

protein sequence of rna969

>rna969-protein ID=rna969-protein|Name=rna969|organism=Nannochloropsis gaditana|type=polypeptide|length=176bp
MGNFDVAPLLMKAKSRVWGFTRLLLCKLASGIFTQLSDRALRPIATTMEN
ISKKLDNKTLTGRYDMKQLIKVQQVEQWFMSCLVELYKVDDEDKLPINFD
LLEVIEMSKDKRPTFLAEKMTECPSDVQPAIKELLAKIDELNIQLFVRQR
RSRAGKDVEKFQFLYPHVRYRTSGKE

mRNA from alignment at CM002456.1:859390..861840+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna969 ID=rna969|Name=rna969|organism=Nannochloropsis gaditana|type=mRNA|length=2451bp|location=Sequence derived from alignment at CM002456.1:859390..861840+ (Nannochloropsis gaditana)
ATGGGAAACTTTGATGTAGCCCCTTTGCTTATGAAAGCGAAGTACTTTAG
ATAACATGTGTTTTTGAGGCAATGAAGAAAAAATTGACAACTTAATTTAT
TGCTTATAAGTTTAGGCTTTGCTCCCTCTTTTGTAGTTGTGAGATCAATC
CAACATTTTGTTGACATCAGCAATACAATGTTGTAATAATTTTTGATAAC
TTACTTCACAACCTGACTTATCTACAACACAGTTATTCCATGTTCTTAAC
GCTCACAGGACAGGTCAAGAGTCTGGGGATTTACGAGACTTTTGCTCTGC
AAAGTACGTTTCAGTCGAGCCTTTTCGTATGGAACACTTCACTACATACG
TTTGCGATAGAAGACATGCGCCAGTCAATAGCAAGTCTTGTGGTTATGTC
GAACGAAAAGAGAAGGTCAACGCGAAGCGCTAAAAAAATATGACATGGTC
GGAGGACAGTGGGATCTTGGCGACAGGGCCCGCGGCCCGGTGGCCGGGCG
CGAACGTCAGTCTTTGAACCCACGATCTCCTGCACCCAAAGCAGGAATGT
TAACCACTACACCATGACCCCGATAAAACACCGACTTAGGACATGTGGGT
CGATACTAAGGGTCCATTACGACGCACTAATCACGCTACATGCACATGAG
ATAAGCGTTTATCGACTCGTAATACATGCAAATGGGAACCAGAAACTCAT
GGATTCTCCTCTCAAAAAAATGAATCTACGGCTTTTGTATGTATTGAGCC
ATAGATTTTAAAAATCCGTGCTGGTATCTTCCCAGCATGTGATAGCAGGA
TTCCAGCATGTGATGGCAGGATTGTTGAGCAGCCCCATAACATCGAGTTC
TAGGGGAACAGCAAGGCCATACCTCTCAAAATCCTGGTTTCTCCCttgtt
tttccctccttctcctatTGTTGCCTTATAATTTAAAAATGGTTACAAAA
GGGAAGTAAGGCCATTGTCTGAGATCAAAATATCCCTGTCGCACTCGCGC
TAATTTAGAGTGTATACTTCCTTGATCCTGCGCGcagctttcccccccac
aaCTTTTCCCCATCTTTTCAAACCGCAGCATcattttgtttttttttcca
cctTGTCGATAAGCTTAAGTTGACGGATAGACTCGGAGTACACGCCACCT
AGGCGTGTTTACCCTCATCAGTCCCCTTTCACGGTTAAAAAATTATTTTG
CAAGCTCAACTGACATTCCTATTCTTTACAGTACATGCTGCTGATATCTT
TATATCACTGATCAATCTATCTCGAAATTACTCACATAATGCTAAAAATT
CGGACACTTTGTCGTTTTTGTATTCACTTTTTCGAGGAGTAATGCACAAC
CAACCAGGTTGAATATGTAAGACTTTGGCATGATAAAATCGCGTGTCAGG
AGTTCTACAAACGCAAATTCATTTTCTAGATGTCCTGGTTAAATTGATTG
CTGTCATGCAAGAGTCAAATCGCACAAAGGCAATAGATGTATGACTTCAG
CTAGTAATTCCACGCATATTTGTTTCCATTTCTTATTATATTATACTGCT
TAAATTATGCGATAAAACGCATTGCGTACACGCTCCTTTGAAATcgcagg
aaagaaaaagatcCATTATAGCCTGCAGCTTGCACAATATACCCTACATG
CTCTTACATCATTAATCCGATCGGAAAAATAGAGATACATTTATTGGTGT
ACAGAGCAATATCTGTTCGTCCATATCAGGTAATGCAGTAGCTGCTCACC
AATGTAGTGTGCTTTTAGCGCACCACATCCGCACAAGTCTCTTaccctac
ccggaggagaggagctgTAACGACTGTCAGCGATAAGCCGTTACCTGCCC
CCTTCTGGGGCATTTATGATTCCCACCCCAGCAACCAACGCTCTGACATA
GCACGGCACGATCCTTCGTACAGGCTTAATTCGCGACAGATTGAAACATT
GAGCTTGCCAGTGGCATCTTCACACAGTTGTCGGACAGGGCTTTACGTCC
CATCGCTACGACCATGGAAAACATTTCAAAGAAACTTGACAACAAAACCC
TGACGGGCCGGTACGATATGAAACAGCTCATCAAGGTGCAGCAAGTAGAG
CAGTGGTTCATGAGCTGCCTGGTAGAGTTGTACAAGGTagatgacgagga
caagTTGCCAATAAACTTTGATTTGTTGGAAGTTATTGAAATGTCAAAGG
ACAAGCGTCCTACATTCCTCGCGGAGAAGATGACAGAATGCCCTTCGGAC
GTCCAGCCTGCCATCAAGGAACTCCTGGCGAAAATCGACGAATTAAATAT
TCAATTGTGAGAAAACTTCAAGGATATTTATCAGGATAAAGGTTACCTGC
ATAGATTCGTGAGGCAAAGGCGAAGTCGAGCGGGTAAAGATGTTGAGAAA
TTTCAATTTCTGTATCCTCATGTTAGATACAGAACTTCTGGGAAAGAATG
A

Coding sequence (CDS) from alignment at CM002456.1:859390..861840+

>rna969 ID=rna969|Name=rna969|organism=Nannochloropsis gaditana|type=CDS|length=2124bp|location=Sequence derived from alignment at CM002456.1:859390..861840+ (Nannochloropsis gaditana)
ATGGGAAACTTTGATGTAGCCCCTTTGCTTATGAAAGCGAAGTCAAGAGT
CTGGGGATTTACGAGACTTTTGCTCTGCAAACTTGCCAGTGGCATCTTCA
CACAGTTGTCGGACAGGGCTTTACGTCCCATCGCTACGACCATGGAAAAC
ATTTCAAAGAAACTTGACAACAAAACCCTGACGGGCCGGTACGATATGAA
ACAGCTCATCAAGGTGCAGCAAGTAGAGCAGTGGTTCATGAGCTGCCTGG
TAGAGTTGTACAAGGTagatgacgaggacaagTTGCCAATAAACTTTGAT
TTGTTGGAAGTTATTGAAATGTCAAAGGACAAGCGTCCTACATTCCTCGC
GGAGAAGATGACAGAATGCCCTTCGGACGTCCAGCCTGCCATCAAGGAAC
TCCTGGCGAAAATCGACGAATTAAATATTCAATTATTCGTGAGGCAAAGG
CGAAGTCGAGCGGGTAAAGATGTTGAGAAATTTCAATTTCTGTATCCTCA
TGTTAGATACAGAACTTCTGGGAAAGAATGAATGGGAAACTTTGATGTAG
CCCCTTTGCTTATGAAAGCGAAGTCAAGAGTCTGGGGATTTACGAGACTT
TTGCTCTGCAAACTTGCCAGTGGCATCTTCACACAGTTGTCGGACAGGGC
TTTACGTCCCATCGCTACGACCATGGAAAACATTTCAAAGAAACTTGACA
ACAAAACCCTGACGGGCCGGTACGATATGAAACAGCTCATCAAGGTGCAG
CAAGTAGAGCAGTGGTTCATGAGCTGCCTGGTAGAGTTGTACAAGGTaga
tgacgaggacaagTTGCCAATAAACTTTGATTTGTTGGAAGTTATTGAAA
TGTCAAAGGACAAGCGTCCTACATTCCTCGCGGAGAAGATGACAGAATGC
CCTTCGGACGTCCAGCCTGCCATCAAGGAACTCCTGGCGAAAATCGACGA
ATTAAATATTCAATTATTCGTGAGGCAAAGGCGAAGTCGAGCGGGTAAAG
ATGTTGAGAAATTTCAATTTCTGTATCCTCATGTTAGATACAGAACTTCT
GGGAAAGAATGAATGGGAAACTTTGATGTAGCCCCTTTGCTTATGAAAGC
GAAGTCAAGAGTCTGGGGATTTACGAGACTTTTGCTCTGCAAACTTGCCA
GTGGCATCTTCACACAGTTGTCGGACAGGGCTTTACGTCCCATCGCTACG
ACCATGGAAAACATTTCAAAGAAACTTGACAACAAAACCCTGACGGGCCG
GTACGATATGAAACAGCTCATCAAGGTGCAGCAAGTAGAGCAGTGGTTCA
TGAGCTGCCTGGTAGAGTTGTACAAGGTagatgacgaggacaagTTGCCA
ATAAACTTTGATTTGTTGGAAGTTATTGAAATGTCAAAGGACAAGCGTCC
TACATTCCTCGCGGAGAAGATGACAGAATGCCCTTCGGACGTCCAGCCTG
CCATCAAGGAACTCCTGGCGAAAATCGACGAATTAAATATTCAATTATTC
GTGAGGCAAAGGCGAAGTCGAGCGGGTAAAGATGTTGAGAAATTTCAATT
TCTGTATCCTCATGTTAGATACAGAACTTCTGGGAAAGAATGAATGGGAA
ACTTTGATGTAGCCCCTTTGCTTATGAAAGCGAAGTCAAGAGTCTGGGGA
TTTACGAGACTTTTGCTCTGCAAACTTGCCAGTGGCATCTTCACACAGTT
GTCGGACAGGGCTTTACGTCCCATCGCTACGACCATGGAAAACATTTCAA
AGAAACTTGACAACAAAACCCTGACGGGCCGGTACGATATGAAACAGCTC
ATCAAGGTGCAGCAAGTAGAGCAGTGGTTCATGAGCTGCCTGGTAGAGTT
GTACAAGGTagatgacgaggacaagTTGCCAATAAACTTTGATTTGTTGG
AAGTTATTGAAATGTCAAAGGACAAGCGTCCTACATTCCTCGCGGAGAAG
ATGACAGAATGCCCTTCGGACGTCCAGCCTGCCATCAAGGAACTCCTGGC
GAAAATCGACGAATTAAATATTCAATTATTCGTGAGGCAAAGGCGAAGTC
GAGCGGGTAAAGATGTTGAGAAATTTCAATTTCTGTATCCTCATGTTAGA
TACAGAACTTCTGGGAAAGAATGA

Synonyms

Publications