EWM29706.1, cds963 (CDS) Nannochloropsis gaditana

Overview
NameEWM29706.1
Unique Namecds963
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:846770..847213 +
Alignment locationCM002456.1:847280..847750 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29706.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100124g11.8327.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:846770..847213 +
CM002456.1supercontigCM002456.1:847280..847750 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR025929INSIG_fam
Homology
BLAST of EWM29706.1 vs. NCBI_GenBank
Match: gi|585112284|gb|EWM29706.1| (hypothetical protein Naga_100124g11 [Nannochloropsis gaditana])

HSP 1 Score: 619.772 bits (1597), Expect = 0.000e+0
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0
Query:    1 MCTSTAVPLRVPRVFFILPTSYRAHPASPILHKCGPSTDYQMAPCISLSSYSHLSPARRSSGPTLSGRWAKAGCLHGSKTSREAQRTRPGDTKARPKPWFPFFALMGIESSILGPFLDDFHGRTGVLHYNDPLSVDIGQYHVLGTAAWVPLLFGLAGVIMSFLTVVMDEAFQTPCKKLQPAPPDVLKGISLFSFQYYISGVLAGVFLVNPVILNVSLLGLAVVCYLRFDRTWAGLTVGVLTSIFGPILELLLTTYTELYIYSSPDFYSVPSWIPWVYLCGGPAVCNLARAQWQALQDSTSGHEA 304
            MCTSTAVPLRVPRVFFILPTSYRAHPASPILHKCGPSTDYQMAPCISLSSYSHLSPARRSSGPTLSGRWAKAGCLHGSKTSREAQRTRPGDTKARPKPWFPFFALMGIESSILGPFLDDFHGRTGVLHYNDPLSVDIGQYHVLGTAAWVPLLFGLAGVIMSFLTVVMDEAFQTPCKKLQPAPPDVLKGISLFSFQYYISGVLAGVFLVNPVILNVSLLGLAVVCYLRFDRTWAGLTVGVLTSIFGPILELLLTTYTELYIYSSPDFYSVPSWIPWVYLCGGPAVCNLARAQWQALQDSTSGHEA
Sbjct:    1 MCTSTAVPLRVPRVFFILPTSYRAHPASPILHKCGPSTDYQMAPCISLSSYSHLSPARRSSGPTLSGRWAKAGCLHGSKTSREAQRTRPGDTKARPKPWFPFFALMGIESSILGPFLDDFHGRTGVLHYNDPLSVDIGQYHVLGTAAWVPLLFGLAGVIMSFLTVVMDEAFQTPCKKLQPAPPDVLKGISLFSFQYYISGVLAGVFLVNPVILNVSLLGLAVVCYLRFDRTWAGLTVGVLTSIFGPILELLLTTYTELYIYSSPDFYSVPSWIPWVYLCGGPAVCNLARAQWQALQDSTSGHEA 304          
BLAST of EWM29706.1 vs. NCBI_GenBank
Match: gi|299471742|emb|CBN76963.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 155.221 bits (391), Expect = 9.152e-42
Identity = 84/190 (44.21%), Postives = 118/190 (62.11%), Query Frame = 0
Query:  106 MGIESSILGPFLDDFHGRTGVLHYNDPLSVDIGQYHVLGTAAWVPLLFGLAGVIMSFLTVVMDEAFQTPCKKLQPAPPDVLKGISLFSFQYYISGVLAGVFLVNPVILNVSLLGLAVVCYLRFDRTWAGLTVGVLTSIFGPILELLLTTYTELYIYSSPDFYSVPSWIPWVYLCGGPAVCNLARAQWQAL 295
            M    ++LGP LD++H   GVL Y  P+ +++  + +L T  WVP LF +AG  +  L +++D A +TP  + +P   DVL  ISLFSFQYY+SG+L  V   N V++  SL  +A   +  FD T AGL V + T+  GP++E+ L   T+LY+Y+  DF+ V SWIP VY CGGPAV NLAR  +  L
Sbjct:   94 MAAAGALLGPNLDNYHSAFGVLAYKHPIELNVAGHLILTTDWWVPPLFAVAGAGIGALYILLDAALETPQAQREPLWRDVLLSISLFSFQYYLSGLLTAVGCPNWVLVG-SLAVIAERVFDVFDATRAGLWVSLATATLGPLIEIFLVNATDLYMYNGADFFGVDSWIPIVYFCGGPAVGNLARTIYAKL 282          
BLAST of EWM29706.1 vs. NCBI_GenBank
Match: gi|551662850|ref|XP_005834190.1| (hypothetical protein GUITHDRAFT_69977 [Guillardia theta CCMP2712] >gi|428178334|gb|EKX47210.1| hypothetical protein GUITHDRAFT_69977 [Guillardia theta CCMP2712])

HSP 1 Score: 128.257 bits (321), Expect = 3.179e-32
Identity = 77/207 (37.20%), Postives = 107/207 (51.69%), Query Frame = 0
Query:   99 WFPFFALMGIESSILGPFLDDFHGRTGVLHYNDPLSVDIGQYHVLGTAAWVPLLFGLAGVIMSFLTVVMDEAFQTPCKKLQPAPPDVLKGISLFSFQYYISGVLAGVFLVNPVILNVSLLGLAVVCYLRFDRTWAGLTVGVLTSIFGPILELLLT------TYTELYIYSSPDFYSVPSWIPWVYLCGGPAVCNLARAQWQALQDST 299
            W      M    ++LGP LD +H   GVL Y +P  + +  + +  T  WVP +F LA VI+     ++D  F+     + P PP  L  +S F FQYY SG+L     V  V L++SL   AV C+  FDRT  G  + ++T + GP++E+ L       T   LY YS+PD   +P WI WVY CG PAV  L+R  W  +   T
Sbjct:   14 WRDHLLAMATYGAMLGPQLDGYHSAFGVLKYTNPKQISLAGHFLFETDYWVPAMFALASVILGISYPILDMIFKEEELSV-PTPPKSLACVSFFCFQYYCSGLLFQQG-VEDVSLHLSLAISAVACWWIFDRTRTGAIMSIVTGLCGPLVEVFLLQVWPAWTGQTLYAYSAPDMLGIPLWIAWVYGCGAPAVGGLSRLTWNYVSTRT 218          
BLAST of EWM29706.1 vs. NCBI_GenBank
Match: gi|971519736|dbj|GAQ78429.1| (hypothetical protein KFL_000130110 [Klebsormidium nitens])

HSP 1 Score: 122.865 bits (307), Expect = 2.760e-29
Identity = 78/211 (36.97%), Postives = 106/211 (50.24%), Query Frame = 0
Query:  111 SILGPFLDDFHGRTGVLHYNDPLSVDIGQYHVLGTAAWVPLLFGLAGVIMSFLTVVMD------EAF-----------------------QTPCKKLQPAPPDVLKGISLFSFQYYISGVLA---GVFLVNPVILNVSLLGLAVVCYLRFDRTWAGLTVGVLTSIFGPILELLLTTYTELYIYSSPDFYSVPSWIPWVYLCGGPAVCNLAR 289
            +ILGP LD  H    VLHY +P  + +G +  L T  WVPLLFG A VI+     ++D      EA                        + P     P+   VL  I+LF+ QY +SGVLA       ++   +N++L G A+  +  FDRT +GL    LT+  GP++E+ L     LY Y+ PD + +P WIPWVY CG PAV NL R
Sbjct:   93 AILGPLLDGRHSTHNVLHYENPTVIRLGSFFQLETCWWVPLLFGGAAVILGIGHPLLDSIDRKSEALSQLEATSQLAGLEGGAPIRSFLRKEPTGGYAPSWSFVLISIALFAMQYDLSGVLAEKASSGELSWTAVNLALAGTAIAHWATFDRTRSGLFWAALTATVGPLVEIGLIEGLHLYHYTHPDVFGIPLWIPWVYWCGAPAVGNLGR 303          
BLAST of EWM29706.1 vs. NCBI_GenBank
Match: gi|1210529355|dbj|GAX11989.1| (hypothetical protein FisN_8Lh083 [Fistulifera solaris])

HSP 1 Score: 122.865 bits (307), Expect = 1.130e-28
Identity = 75/204 (36.76%), Postives = 113/204 (55.39%), Query Frame = 0
Query:  106 MGIESSILGPFLDDFHGRTGVLHYNDPLSVDI----GQYHVLGTAAWVPLLFGLAGVIMSFLTVVMDEAFQTPCKKLQPAPPDVLKGISLFSFQYYISGVLAGVFLVNPVILNVSLLGLAVVCYLRFDRTWAGLTVGVLTSIFGPILELLLTTYTELYI-----YSSPDFYSV---PSWIPWVYLCGGPAVCNLARAQWQALQD 297
            M +  + LGPFLD +H   GVLHY  P++  +     ++  L TA WVP LFGLAG ++ +L + +D         ++P+ P +L GISLF+FQY+ SGVL  + +    ILN+ +  +A + ++  D T AGL     T++ GP++E+ L + ++  +     Y+  D       P WI  VY  GGPA  NLAR  W A+ D
Sbjct:   98 MTLAGATLGPFLDTYHSAFGVLHYEHPITAALWSSAEEHPALITAWWVPELFGLAGFLIGWLYIALDAGLSP--SSIRPSVPKILGGISLFTFQYWFSGVLVAMGVDRVTILNI-MSTMAAMGFVALDGTLAGLVTSTATALGGPLIEICLLSLSQAGMLGENGYAYTDLGETGFFPLWICPVYFLGGPANGNLARGLWNAISD 298          
BLAST of EWM29706.1 vs. NCBI_GenBank
Match: gi|1210527108|dbj|GAX14081.1| (hypothetical protein FisN_8Hh083 [Fistulifera solaris])

HSP 1 Score: 117.857 bits (294), Expect = 8.115e-27
Identity = 73/202 (36.14%), Postives = 110/202 (54.46%), Query Frame = 0
Query:  106 MGIESSILGPFLDDFHGRTGVLHYNDPLSVDIGQYH--VLGTAAWVPLLFGLAGVIMSFLTVVMDEAFQTPCKKLQPAPPDVLKGISLFSFQYYISGVLAGVFLVNPVILNVSLLGLAVVCYLRFDRTWAGLTVGVLTSIFGPILELLLTTYTELYI-----YSSPDFYSV---PSWIPWVYLCGGPAVCNLARAQWQALQD 297
            M +  + LGPFLD +H   GVLHY  P++  +       L TA WVP LFG+AG ++ +L + +D    +  K+  P+ P +L GIS F+FQY+ SGVL  + +    ILN+ +  +A + ++  D + AGL     T++ GP++E+ L + T   +     Y+  D       P WI  VY  GGPA  NLAR  W A+ +
Sbjct:   93 MTLAGATLGPFLDTYHSTFGVLHYEHPITAALWSSADPALITAWWVPELFGVAGFLIGWLYIGLDAGLSSSSKR--PSVPKILVGISFFTFQYWFSGVLVAMGVDRVTILNI-MSAMAAIGFVALDGSLAGLVTSTATAVGGPLIEIGLLSLTRAGMLGENGYAYTDLGETGFFPLWICPVYFLGGPANGNLARGLWNAISE 291          
BLAST of EWM29706.1 vs. NCBI_GenBank
Match: gi|1072228894|gb|OEU13629.1| (hypothetical protein FRACYDRAFT_226830 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 115.931 bits (289), Expect = 1.164e-26
Identity = 80/216 (37.04%), Postives = 116/216 (53.70%), Query Frame = 0
Query:  106 MGIESSILGPFLDDFHGRTGVLHYNDPLSVDI---GQYHVLGTAAWVPLLFGLAGVIMSFLTVVMD------------EAFQTPCKKLQPAPPDVLKGISLFSFQYYISGVLAGVFLVNPV-ILNVSLLGLAVVCYLRFDRTWAGLTVGVLTSIFGPILELLLTTYTELYIYSSPDFYS-------VPSWIPWVYLCGGPAVCNLARAQWQALQDS 298
            M I  + LGPFLD +H   GVL YN+P+   +     Y  L TA WVP LFGLAG ++ +L +++D            +  +   ++L P+PP +  GIS F+FQY++SG+L    L++   ILN+  +  A + +L  D + +GL V + T + GP++E  L T T   I +    Y+        P WI  VY  GGPA  NLAR  W AL D+
Sbjct:    1 MSICGAGLGPFLDSYHSAFGVLKYNEPIQFVLWGSEAYPGLTTAWWVPELFGLAGFLIGWLYILLDAVLLKESSSDEGDVVEQEQQRL-PSPPKIFAGISFFTFQYWLSGILVQNSLLDRTGILNLMSV-FAAIGFLVLDGSMSGLIVSLATCLGGPLIEAGLITATNNGILNGGYHYTDLGETGFFPLWIIPVYFLGGPANGNLARGFWNALSDN 214          
BLAST of EWM29706.1 vs. NCBI_GenBank
Match: gi|552823403|ref|XP_005846347.1| (hypothetical protein CHLNCDRAFT_135775 [Chlorella variabilis] >gi|307105998|gb|EFN54245.1| hypothetical protein CHLNCDRAFT_135775 [Chlorella variabilis])

HSP 1 Score: 111.309 bits (277), Expect = 5.707e-26
Identity = 73/192 (38.02%), Postives = 95/192 (49.48%), Query Frame = 0
Query:  108 IESSILGPFLDDFHGRTGVLHYNDPLSVDIGQYHVLGTAAWVPLLFGLAGVIMSFLTVVMD-----EAFQTPCKKLQPAPPDVLKGISLFSFQYYISGVLAGVFLVNPV-----ILNVSLLGLAVVCYLRFDRTWAGLTVGVLTSIFGPILELLLTTYTELYIYSSPDFYSVPSWIPWVYLCGGPAVCNLAR 289
            + S+ILGP  D  H +  VLHY  P  + +G    L T  WVPLLF  AG+I+     ++D        Q P     P+   VL  I+LF  QY  SG L    L   +      L+  LL   V  +  FD +  GL +  LT++ GP +E+ L      Y Y+ P F  +PSWI WVYL GGPAV NL R
Sbjct:    1 MASAILGPLCDGQHSQHDVLHYAHPSLLSLGPLR-LETCWWVPLLFAAAGIILGVSHPLLDAWQQERGGQQPRGGADPSWSFVLAAITLFVLQYAASGTLEEPLLRQALPGGLPALDALLLSSGVALWWAFDCSPQGLLMACLTAVAGPAVEVALINGLHAYTYTHPSFLGIPSWIAWVYLAGGPAVGNLGR 191          
BLAST of EWM29706.1 vs. NCBI_GenBank
Match: gi|145341901|ref|XP_001416041.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144576264|gb|ABO94333.1| predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 112.079 bits (279), Expect = 6.120e-24
Identity = 83/261 (31.80%), Postives = 111/261 (42.53%), Query Frame = 0
Query:  104 ALMGIESSILGPFLDDFHGRTGVLHYNDPLSVD---------------------------------IGQYHVLGTAAWVPLLFGLAGVIMSFLTVVMDE-----------------------------------AFQTPCKKLQPAPPDVLKGISLFSFQYYISGVLAG-------VFLVNPVILNVSLLGLAVVCYLRFDRTWAGLTVGVLTSIFGPILELLLTTYTELYIYSSPDFYSVPSWIPWVYLCGGPAVCNLAR 289
            ALM +  +ILGP LD  H R  VLHY  PL +                                  + +  VL T  WVP LFG A +++      +DE                                   A   P    QP+   V   IS+F+FQY +SG+LA         FL   +I ++ L   AV  +  FD +  GL +  LT++ GP+ E++L  Y  LY YS PD   +P+WIPWVY CGGPAV NL+R
Sbjct:   76 ALMFVAGAILGPLLDHQHSRFDVLHYATPLQIHFDALFAPLWNSPFGPIMNFIAPEPVKDLFRIMFVNENGVLETGWWVPPLFGAAAIVIGLGHTSLDEFRIRSSVKRAREIEIRKGLQGTEQIVSRTSELIENAKGKPALGWQPSWVSVNLCISVFAFQYLVSGILASPQSPFVDGFLPYHLI-DIFLCVWAVTTWYFFDNSAQGLFMASLTAVCGPVAEIVLINYGHLYSYSHPDILGIPTWIPWVYFCGGPAVGNLSR 335          
BLAST of EWM29706.1 vs. NCBI_GenBank
Match: gi|397569292|gb|EJK46650.1| (hypothetical protein THAOC_34668, partial [Thalassiosira oceanica])

HSP 1 Score: 110.538 bits (275), Expect = 8.293e-24
Identity = 76/208 (36.54%), Postives = 106/208 (50.96%), Query Frame = 0
Query:   96 PKPWFPFFALMGIESSILGPFLDDFHGRTGVLHYNDPLSVDI----GQYHVLGTAAWVPLLFGLAGVIMSFLTVVMDEAFQTPCKKLQPAPPDVLKGISLFSFQYYISGVLAGVFLVNPVILNVSLLGLAVVCYLRFDRTWAGLTVGVLTSIFGPILELLLTTY----TELYIYSSPDFYSVPSWIPWVYLCGGPAVCNLARAQWQAL 295
            P+    F   M    ++LGPFLD +H   GVL Y+ PL+  I    G      T  WVP LFGLAG ++ +L + +DE F     +   APP VL GI+ F+ QY++SGVL    +    IL++ +  LA   +   D TW+G      T++ GP++E+ L +        +   S +    P WI  VY  GGPA  NLARA W  L
Sbjct:  176 PQRSISFSIFMAFCGAMLGPFLDSYHSLFGVLAYDTPLTFPILGSGGDILQCVTTYWVPPLFGLAGFLIGWLYIWLDEVFDV---EDVVAPPKVLLGIAFFTLQYWLSGVLYANGVDRSSILSI-MSALAAFGFYALDGTWSGFLTSTATALGGPLIEVGLISSLPPDIGYHYTDSGELGFFPLWILPVYFLGGPANGNLARAFWDRL 379          
The following BLAST results are available for this feature:
BLAST of EWM29706.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112284|gb|EWM29706.1|0.000e+0100.00hypothetical protein Naga_100124g11 [Nannochlorops... [more]
gi|299471742|emb|CBN76963.1|9.152e-4244.21conserved unknown protein [Ectocarpus siliculosus][more]
gi|551662850|ref|XP_005834190.1|3.179e-3237.20hypothetical protein GUITHDRAFT_69977 [Guillardia ... [more]
gi|971519736|dbj|GAQ78429.1|2.760e-2936.97hypothetical protein KFL_000130110 [Klebsormidium ... [more]
gi|1210529355|dbj|GAX11989.1|1.130e-2836.76hypothetical protein FisN_8Lh083 [Fistulifera sola... [more]
gi|1210527108|dbj|GAX14081.1|8.115e-2736.14hypothetical protein FisN_8Hh083 [Fistulifera sola... [more]
gi|1072228894|gb|OEU13629.1|1.164e-2637.04hypothetical protein FRACYDRAFT_226830 [Fragilario... [more]
gi|552823403|ref|XP_005846347.1|5.707e-2638.02hypothetical protein CHLNCDRAFT_135775 [Chlorella ... [more]
gi|145341901|ref|XP_001416041.1|6.120e-2431.80predicted protein [Ostreococcus lucimarinus CCE990... [more]
gi|397569292|gb|EJK46650.1|8.293e-2436.54hypothetical protein THAOC_34668, partial [Thalass... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna963rna963Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications