rna963, rna963 (mRNA) Nannochloropsis gaditana

Overview
Namerna963
Unique Namerna963
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1806
Alignment locationCM002456.1:846770..847750 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100124g11.8327.mrna
Orig protein idgnl|cribi|Naga_100124g11.8327
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:846770..847750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100124g11gene926Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna963rna963-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29706.1cds963Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna963 ID=rna963|Name=rna963|organism=Nannochloropsis gaditana|type=mRNA|length=1806bp
ATGTACACGACTAGCTTGCGCTTTCGGAAATGGCGGTACCATGTGCTAGA
CTCGCTACAACGAACAGACTTGCCTGTCTTTGTCAAAGGACACGTTTCGG
CCGCCGCCCGCAGCTCGAGGACTTGGTTCTATTACGGTTCGCTGCTGTTT
GCCACGATGTACGTGGTTAGCATGCTTCAATTCTACTCCCCCTCCGTCCC
GCCCAGCATGCTGGAACCCGCCTACCGAGCTTGTCGTCGTGGCCGGCAGT
CCGGCGACCGTCTTCCTTTCCTTTACCACAGCAGTGGGAGGATACGGAAA
GCATCAAGTGTAAGCAGTCGCGTGCTCTACGCAGAGCGGTATGTCGAGGA
TGCCAGACAAGATCCAAGGGAAGCGAGGGGAAGAGGAACCGGACAAAGAG
ATGGAAGCGTGCTGGGGGGAAGCGTGGGCTCGGAGAGACTTGGGGACCAA
ACAGGCACGGGAGAGGATGCGCGGAGACAGGAGGAAAAGGAATCCGACTC
CATCTTTGCCCCACAACTGCTGCAGCTTGCCGCCCTGGCGACAGGGGTGA
GCACGGGCTCGGAGGCGGGGAGCAAGCTGTCATCTAGTCAGGGAGCAGCT
GCCACTGACGGTTCTCGGAAAGAAGGGCATGACAACTACTACCATTTCCA
GGGTCTGTTTGTGCCAGCAGTCAGTTGTCCATCCGCCCACTTCAGATCAG
GGCGCGGTATTGTCATAACAGCCTCAGGACGCATTTCAGGGCAGGCCATA
GGCGCGTTCGTGACAAGTTTCCTTCTTCGTCGAGTGCTAGGGTGTGAGCT
GCCCATCGAGATATACTTCGTCGGAGAGCACGAAATATTCAGTACGGCAC
TAAGAGACAAGATTTTGGAACTGAAAGATGTTAGGGTCTCAAGCCTGCTA
GACGTTCTGGGCTCTGACCCGTTTTACCAGTCTAAGCTCAAACATCTACA
CGTCCCCGACCGACGCCTCCGCAGCTACGCTGCGAAACCGTACGCGCTTT
ATGCGGCTCCGTTCGAGGAGGTTCTTCTCTTTGATGCGGGAGTTATACCT
TTCGCCAACCCCGAGAACTTCTTTGGGCTGGACAGCTTCAGGGACCATGG
GTTTCACATTTTTCGAGACTACCGGGAGCTGGACCGCAATGCCTGGGGCT
TCGTAGAGCACGAGTATTGCACTGACATGGATGAGCTGCACGGGCTGCTG
GCTGGCACCGAGGCGGATTCTAGCTGCGTTCTTCTTCACAAGGGCCGCGC
CTGGGACGCTCTCTTGGTTACCATGGCAATGAATGGACCGTTACAGCCTT
TTACCTACGCGCGTTTAAACGGAGACAAGGATACGTGGGCGCTGGCTGCC
GCGTTGACTTACCAGAACTTCTCCATGGCCCAGACCACGCCCGGCTATTT
TATGAGGGAAGCCCGACCAGAGCTAACGCTCCTCGATTCTGCCTACGCAG
GATGGGCTCAGCCTATCCGAGGTCAAGTCCAGTTTCGCCGCGATCCCGAA
GCGGTGGGCGGCGTGGTCCCTTTGTACGTGAACAATCAGCTCCTAAACAT
GACCGAATATCCGGGGATGCGCCATCGGCTCGCGTTTGGTCTCTGGGAAG
ACTATGGCTACCCTTTTTGCGGATGGCGAGCCGTAAATGCCTTGTTGCGT
CCCCCGCCTGAAGTATTCAATGTTATGGACGCCGTAGGGGAAGCCTTGCA
TACGGTGGGGGCGCCCGATGAATGTCTGTGCAAATGGTTTAGGTGCCGTT
TCCCTGTTGCATTTGGGACTGATTCCCCTTTCCTTCTCCGCCGATTGTTC
AGCTAG
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protein sequence of rna963

>rna963-protein ID=rna963-protein|Name=rna963|organism=Nannochloropsis gaditana|type=polypeptide|length=304bp
MCTSTAVPLRVPRVFFILPTSYRAHPASPILHKCGPSTDYQMAPCISLSS
YSHLSPARRSSGPTLSGRWAKAGCLHGSKTSREAQRTRPGDTKARPKPWF
PFFALMGIESSILGPFLDDFHGRTGVLHYNDPLSVDIGQYHVLGTAAWVP
LLFGLAGVIMSFLTVVMDEAFQTPCKKLQPAPPDVLKGISLFSFQYYISG
VLAGVFLVNPVILNVSLLGLAVVCYLRFDRTWAGLTVGVLTSIFGPILEL
LLTTYTELYIYSSPDFYSVPSWIPWVYLCGGPAVCNLARAQWQALQDSTS
GHEA
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mRNA from alignment at CM002456.1:846770..847750+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna963 ID=rna963|Name=rna963|organism=Nannochloropsis gaditana|type=mRNA|length=981bp|location=Sequence derived from alignment at CM002456.1:846770..847750+ (Nannochloropsis gaditana)
ATGTGCACATCGACAGCAGTACCTTTGCGTGTGCCAAGGGTATTCTTCAT
CCTACCTACCTCCTACAGAGCACATCCTGCCTCGCCTATTTTGCACAAGT
GTGGACCATCGACTGACTACCAAATGGCACCATGCATCTCTTTGTCGTCC
TACTCCCATCTCAGTCCAGCCCGGCGATCGTCAGGACCGACTTTGAGTGG
GCGTTGGGCCAAGGCAGGCTGTCTACATGGTTCAAAGACAAGTCGTGAGG
CTCAAAGAACAAGACCGGGTGACACAAAAGCGAGGCCAAAGCCGTGGTTT
CCGTTCTTTGCGCTTATGGGAATCGAGTCTTCAATTTTAGGACCTTTTTT
GGACGACTTTCACGGCCGTACTGGCGTACTGCACTATAACGACCCCCTGA
GCGTTGATATCGGTCAATACCACGTTCTCGGCACCGCTGCATGGGTAAGA
AGTTGCCCATGAAACTCACAAACCGCTGTGTAATTCATATGATTTTATTT
TCTGTGACAGGTCCCTCTCTTGTTCGGCCTGGCAGGCGTGATCATGAGCT
TTCTGACCGTCGTAATGGACGAAGCCTTTCAGACACCTTGCAAGAAGTTG
CAGCCCGCACCTCCAGACGTGCTGAAAGGCATCTCACTTTTTAGTTTCCA
GTACTACATTTCCGGGGTCCTGGCAGGTGTCTTTTTGGTGAATCCTGTGA
TCCTCAATGTTTCTCTCCTGGGGCTCGCTGTTGTGTGCTATTTGCGTTTT
GATCGGACATGGGCCGGCCTGACAGTGGGTGTATTAACTAGTATATTCGG
CCCCATCCTCGAGTTGCTGCTCACAACATATACGGAGTTATATATTTATT
CATCTCCTGACTTCTATAGTGTGCCATCCTGGATTCCATGGGTGTATTTA
TGCGGTGGTCCTGCTGTGTGTAACCTGGCACGGGCGCAGTGGCAGGCCTT
GCAGGATTCCACCTCAGGTCATGAGGCGTGA
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Coding sequence (CDS) from alignment at CM002456.1:846770..847750+

>rna963 ID=rna963|Name=rna963|organism=Nannochloropsis gaditana|type=CDS|length=1830bp|location=Sequence derived from alignment at CM002456.1:846770..847750+ (Nannochloropsis gaditana)
ATGTGCACATCGACAGCAGTACCTTTGCGTGTGCCAAGGGTATTCTTCAT
CCTACCTACCTCCTACAGAGCACATCCTGCCTCGCCTATTTTGCACAAGT
GTGGACCATCGACTGACTACCAAATGGCACCATGCATCTCTTTGTCGTCC
TACTCCCATCTCAGTCCAGCCCGGCGATCGTCAGGACCGACTTTGAGTGG
GCGTTGGGCCAAGGCAGGCTGTCTACATGGTTCAAAGACAAGTCGTGAGG
CTCAAAGAACAAGACCGGGTGACACAAAAGCGAGGCCAAAGCCGTGGTTT
CCGTTCTTTGCGCTTATGGGAATCGAGTCTTCAATTTTAGGACCTTTTTT
GGACGACTTTCACGGCCGTACTGGCGTACTGCACTATAACGACCCCCTGA
GCGTTGATATCGGTCAATACCACGTTCTCGGCACCGCTGCATGGGTCCCT
CTCTTGTTCGGCCTGGCAGGCGTGATCATGAGCTTTCTGACCGTCGTAAT
GGACGAAGCCTTTCAGACACCTTGCAAGAAGTTGCAGCCCGCACCTCCAG
ACGTGCTGAAAGGCATCTCACTTTTTAGTTTCCAGTACTACATTTCCGGG
GTCCTGGCAGGTGTCTTTTTGGTGAATCCTGTGATCCTCAATGTTTCTCT
CCTGGGGCTCGCTGTTGTGTGCTATTTGCGTTTTGATCGGACATGGGCCG
GCCTGACAGTGGGTGTATTAACTAGTATATTCGGCCCCATCCTCGAGTTG
CTGCTCACAACATATACGGAGTTATATATTTATTCATCTCCTGACTTCTA
TAGTGTGCCATCCTGGATTCCATGGGTGTATTTATGCGGTGGTCCTGCTG
TGTGTAACCTGGCACGGGCGCAGTGGCAGGCCTTGCAGGATTCCACCTCA
GGTCATGAGGCGTGAATGTGCACATCGACAGCAGTACCTTTGCGTGTGCC
AAGGGTATTCTTCATCCTACCTACCTCCTACAGAGCACATCCTGCCTCGC
CTATTTTGCACAAGTGTGGACCATCGACTGACTACCAAATGGCACCATGC
ATCTCTTTGTCGTCCTACTCCCATCTCAGTCCAGCCCGGCGATCGTCAGG
ACCGACTTTGAGTGGGCGTTGGGCCAAGGCAGGCTGTCTACATGGTTCAA
AGACAAGTCGTGAGGCTCAAAGAACAAGACCGGGTGACACAAAAGCGAGG
CCAAAGCCGTGGTTTCCGTTCTTTGCGCTTATGGGAATCGAGTCTTCAAT
TTTAGGACCTTTTTTGGACGACTTTCACGGCCGTACTGGCGTACTGCACT
ATAACGACCCCCTGAGCGTTGATATCGGTCAATACCACGTTCTCGGCACC
GCTGCATGGGTCCCTCTCTTGTTCGGCCTGGCAGGCGTGATCATGAGCTT
TCTGACCGTCGTAATGGACGAAGCCTTTCAGACACCTTGCAAGAAGTTGC
AGCCCGCACCTCCAGACGTGCTGAAAGGCATCTCACTTTTTAGTTTCCAG
TACTACATTTCCGGGGTCCTGGCAGGTGTCTTTTTGGTGAATCCTGTGAT
CCTCAATGTTTCTCTCCTGGGGCTCGCTGTTGTGTGCTATTTGCGTTTTG
ATCGGACATGGGCCGGCCTGACAGTGGGTGTATTAACTAGTATATTCGGC
CCCATCCTCGAGTTGCTGCTCACAACATATACGGAGTTATATATTTATTC
ATCTCCTGACTTCTATAGTGTGCCATCCTGGATTCCATGGGTGTATTTAT
GCGGTGGTCCTGCTGTGTGTAACCTGGCACGGGCGCAGTGGCAGGCCTTG
CAGGATTCCACCTCAGGTCATGAGGCGTGA
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Synonyms
Publications