rna932, rna932 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna932
Unique Name	rna932
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3232
Alignment location	CM002456.1:759138..760408 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100022g46.834.mrna
Orig protein id	gnl\|cribi\|Naga_100022g46.834
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:759138..760408 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100022g46	gene895	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna932	rna932-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29735.1	cds932	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:759138..760408-
coding sequence from alignment at CM002456.1:759138..760408-

mRNA sequence

>rna932 ID=rna932|Name=rna932|organism=Nannochloropsis gaditana|type=mRNA|length=3232bp
AGTATGACGCGTCTTGAGCGCCAGCTTCCACTGCCTGCCAGAGGATGTGT
AATTTTTCTCCTTGGTATCAGAGCGACCTTAGCAAGGATGTTCTTTGACT
ATCCTTCACATTAGCACAAATCGCTTTACAAATTGACTTTCCTACTACGT
GACGTAAGGGGTACAGGAAACAGAGTACCATCTTGACTCCTTGTGACGTG
ATTCACGACACTCCGATTACCGAAGAGTATCAGCGGCGTGTCAGGATGGC
TTCCAGTAAAGGGAACGAAGTTTTGGAGAACCTGTCGGAGCGGAAAAAGA
ATTTGCTTGAGGCGCGATTTCTCAGACAGGCGCCCAGCAGCTTGGATGGC
CTCTCAACTGGAAGCCGCAGCACAAGTTGTTCTCCAGCATCTTTTCAAAA
GCAACACCAGGGACTCGTTAATGAAGAGGGGATGGGACGTTCGCCAACGC
CGTCGTTGTTCCTCTCTCCGGGAATTTTGGGGAGGCAAAAGAGCGCGGAG
CCCACAGTCCTCGACATGACTGACACCAACTCAGGAGGTGACGAAAGCCG
GGAGAACTGCCTCCAGACGTCCCTTCCAACATCTCACCGCCATTCATTTG
CCGTCGCCGCACCGCCTGTCGCGGCGGCAGCTGCGGGTTCAATCCGTGCG
GTCAATGCTCATGGGACGAGTTCTCATGATCTCCCGCGGCATCTGCCCAA
ATCACACCCTCCGCAGCCTCCCTATAAGCCTCGTGGGAAAGAAGATGCTT
TCCTTGCCTCGCAGCACAACAACCCCAAGAACTCTGGCGGCAAGAACGTC
AGGCAGGCCGAACAAGGACAGGAGAGCCGGAACCACACAGATGTGAAAGC
TTTGCAGCTGTCAAGCCCATTTTCTCGTGATAACACCGCCACTCTTATAG
CGGATAGACTGTCAGCTAGTGTACGCGAGACAAGTCACGGGTCGATCGGT
GCCGCTGCGGGCCCTCCCGTGCCTGCAGGGACCTCTCTCCCGAGTCTGGG
AGGCAACAAGGGCGCCCCGAGCAGCGGTACTTGCATGACTGCCAGTGAAT
CCCACACAGTGGCTCCGGCTAGTATGTGTATGACAGCCAACGTATCAGCA
GCAGCGACCGCAGCTAGTGTTGGGAAGAAGCGGCCCCGCACCAGCGGCTT
GGTCATTGAGGAGCCCCCCGCCCACCAGCCTCACCTGCCCGCCTCGCAGA
AGAGCCCCGTGGACGACGGCAGCCGTCCTCCCAGCATGTCTCCGGGGCGC
ATGGCGGCCGATGGCGTCGGGAAGACTCGTACAATCGTCTCCTACTTTCA
CCCTTCAGGGGCTGGCGGAAGCAGCAGCAGCGGGCATGCGGGGAGTGGAT
TGCAGCGGACAGGGAGCGAGGCGGGACGGGCCCAGGCGAGCAATGGCGGA
GGCTTCGACGTGGGTCCCCACGCCGTTTGTGGCACAATGCCTGATCATGA
GGCAGTGCAGCAAGCGCTCTTGAGCCAGATTCAGAACCTAGAGCGGCAGC
TGCAGGAGGCCACAGGAGAGGTTGCACGCTTAGGTCGTGAGAGAGAGGAG
CATGAGGCCCTCTCCACGAATCTGCGCGAGGAGCTGGTTCGGGCGCAAGA
CGAAGTGCAACGGCTGAAGGAGGAGGCCGCAGAGAAAGAGCAACGTGCAG
CTACATGCATGGAGGATATCCTACGAAAACTCATACATTTTCAAGAGAGA
GAAACGCGCGAACTCTTGGGGAAAAACTCTCACCGGTTGGGGCGGATCGT
CTCGAGCCGAAACGGTCCTCACGGCATGACAGAAATCTGGGAGGAAGGCA
CCGCGCACAAGGAGCTTCAAAAGCAAAGCGCAGAATTGCTGCAACGCAGA
GAGGAGCTGGACCGGCGCAAACGGCAACTTGCGAAGGAAAGCCGCAAAGC
CCTGGCTACTATAAACTCTGCGTCTACCGGCAGCTCCACCTCGGCGTCGG
GATGGATCCTATCCGGCGGGCCGGCTGGGGAAGCCGGGCTGGGTCCTGGC
ATCGGCGAGGGGTCTGCCGATGGCGCGCCGTTCGACGAGCTGCAGCTTAT
GGAGGCGGAGGAAGGGGTGCGCATGCACCTGGGCCAGCTGAAGAAGGACG
AGGCCACGGTACAAGAGGCGCGGAAATCCTTGGAGCGTGAGAAGTCCTTG
TACGTGCGGGAGCTCCGTCGAGTCCAGCACGAGGATCGCTCGCGCTTTAG
TCGTCGACCGGTCATGAACGGGCGCTACTTGCTTCTGGCCTTGCTGGGCC
GCGGCGGCTTCAGCGAGGTCTGGAAAGCCTTTGACATGCGAGAGTATTGC
GAGGCGGCGGTAAAGATTCACCAGCTCAACTCGGCATGGACGGAGGAAAA
GAAGCATAACTACATGAAGCACGCAACGCGAGAGTATGCTATTCACCGGG
AGATGATCCATCCTCGCGTGGTGCGCCTCTTCGATGTCTTCGAGATTGAC
TCCTCTTCCTTTGCCACCGTCCTCGAATATTGCAAAGGAACGGATCTGGA
CCACTTGATGAAGACGCAGAAGATAATCCCAGAGAGGGATGCGCGTGCCA
TCACGATGCAGATTTTGTCCGGGCTGCGGTACCTGAACACTCCCTCGGGG
GAGGGGGCGAACCGGCGGCAAGGAATTATTCACTACGACCTCAAGCCTGG
TAACATCCTTTTCGACGAGCAGGGTGACGTCAAAATCACGGACTTTGGGC
TTTCCAAGATCGTGGACGGGTCGTGCGACGGTTCCTCGCTGGAGCTGACC
TCGCAGGGCGCGGGCACGTACTGGTACCTTCCCCCCGAGTGCTTCATAAT
GGGCTCCACCCCCCCGCGCATATCCTCCAAAGTCGATGTGTGGGCGCTGG
GCGTCATCTTCTTCCAGATGCTGTTCGGGTCGCGGCCCTTCGGGGAGGGC
CAGACCCAGGAGAAGGTCCTGCACGAGAGCACCATGCTGCGCGCTACACG
CGTCTCCTTCCCTGCTAAGCCCCCAATCTCTGCTGACGCCAAAGAATTTA
TCCGCGCCTGCCTCACGCATAGTCAGGCTGACCGTCCGGACGTGCTGAAG
CTCTGTGCCCACCCCTACCTCCGGCTGAAGAAGCTCTGAGGCTCCGAAAT
CCCTTCTCAGGGTCAGCAGCTGTGGGGAGACGCTTAACTGATAGTTCTAG
GAAGTGATCTCGAAATTTAAAAGCAGAAAGAAATAGGGCAAATAATTGTG
CGTTGTCGTGAAAAACAGGTAATGTGACGTCG

protein sequence of rna932

>rna932-protein ID=rna932-protein|Name=rna932|organism=Nannochloropsis gaditana|type=polypeptide|length=136bp
MFAARRIVAHSSALRPAFTHATGRAQAPTRVVRRTLAGHGSAPPATGWEG
EVRKVLKEDWQVVCGIMGFYTTLYLVSKLFSGGKKAAPDTVAASSSATSA
SSEVISMADDKFSEYVGNSENMLKWEQSLNDPKAYE

mRNA from alignment at CM002456.1:759138..760408-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna932 ID=rna932|Name=rna932|organism=Nannochloropsis gaditana|type=mRNA|length=1271bp|location=Sequence derived from alignment at CM002456.1:759138..760408- (Nannochloropsis gaditana)
TGCCCGCTCTCCCGCTCATCACGCCTCGAACGCCACGCTGCTCGAGGCTG
TATTACTCGTTCAGTGCTGGAGACATGGCGAGTGGTCGGCTGGCATTGTC
CTCATCGCTTCAGGCTGCCCGCGCCTCGGGAAGCAGCGCCGAGAGGGCGA
CAGCCTGAGGGAGGGCGAGGGGACAGCGCCGCGCCCTAGCGGATAGAGAC
ATCATGACCTTTGGTGGGATGCTTTATCTGTCTCTGACCCGGGCTACTAC
ATCAACAGACATTGTAAGAAAGTAGCATGTTTGCCGCCCGCCGCATTGTT
GCGCATTCCTCGGCGCTCCGGCCTGCATTTACTCATGCCACCGGACGAGC
GCAGGTGAGCTTGTTGGAGAAGGGAAGTGGGAGGGGCTCCCGATAAGTTG
TCTCTCTTGCGTGTCAACTCCTGGAGTGGGTTTATTGATTCATTCTATAA
CAGGCTCCTACCCGAGTCGTGAGGCGGACATTGGCTGGCCATGGGAGCGC
TCCCCCTGCCACGGGCTGGGAAGGCGAGGTGCGGAAGGTGCTAAAGGAAG
ATTGGCAAGTAGTCTGCGGCATTATGGGGTTCTACACGACGCTTTATCTC
GTCTCTAAGCTGTTTTCTGGGGGCAAAAAAGCGGCTCCTGATACTGGTAC
GAGTCGGAGAGCAGGGATACGGTGGTCGCTGCCACAGACTTTTAAAAGGG
GGTTTCGTGTGATCCGCGTTTTGCATCCAAAGCCTTTGAGGGAGGTGGTT
ATCCGTTTTGTTAATTTGCGTTCTCTTCCTCATTTGACACCTTAATGTCA
TGTGTCTATTTCTTTATCTTCGCCTCCCGTTTCTCGCTAACATTACGAGA
TTCTTTCTTTGCATGACAGTGGCTGCGTCCTCCAGCGCGACCAGCGCGAG
CAGTGAGGTCATTTCCATGGCCGACGACAAGTTCTCTGAGTACGTGGGTA
ACTCTGAAAACATGCTCAAATGGGAGCAGAGTTTGAATGATCCGAAAGCT
TATGAGTAGAGGGTATGGAGCAAACGGGAGGAAGTCAGATCCTCTTGCAA
GGACAAAGCTGCCGAGAGGGACGGGGGATAGCGTCCACCTTTTATTTGTA
TAGGACACTGGTGCAACCATTCGAAATTGGGGCTGGAACGGAAAGTGAAG
TGACGTTTGGTGAGGGTGGTGGACCACCACGTTGGTGGCAAGGAGAATAG
AAGGAAGAAAAAGGGGATCGCGCGTACCTCAATACAACAAGCAAGGACCA
TCGAAATGCTAGTCGACGTCA

Coding sequence (CDS) from alignment at CM002456.1:759138..760408-

>rna932 ID=rna932|Name=rna932|organism=Nannochloropsis gaditana|type=CDS|length=1233bp|location=Sequence derived from alignment at CM002456.1:759138..760408- (Nannochloropsis gaditana)
TGGCTGCGTCCTCCAGCGCGACCAGCGCGAGCAGTGAGGTCATTTCCATG
GCCGACGACAAGTTCTCTGAGTACGTGGGTAACTCTGAAAACATGCTCAA
ATGGGAGCAGAGTTTGAATGATCCGAAAGCTTATGAGTAGGCTCCTACCC
GAGTCGTGAGGCGGACATTGGCTGGCCATGGGAGCGCTCCCCCTGCCACG
GGCTGGGAAGGCGAGGTGCGGAAGGTGCTAAAGGAAGATTGGCAAGTAGT
CTGCGGCATTATGGGGTTCTACACGACGCTTTATCTCGTCTCTAAGCTGT
TTTCTGGGGGCAAAAAAGCGGCTCCTGATACTGATGTTTGCCGCCCGCCG
CATTGTTGCGCATTCCTCGGCGCTCCGGCCTGCATTTACTCATGCCACCG
GACGAGCGCAGTGGCTGCGTCCTCCAGCGCGACCAGCGCGAGCAGTGAGG
TCATTTCCATGGCCGACGACAAGTTCTCTGAGTACGTGGGTAACTCTGAA
AACATGCTCAAATGGGAGCAGAGTTTGAATGATCCGAAAGCTTATGAGTA
GGCTCCTACCCGAGTCGTGAGGCGGACATTGGCTGGCCATGGGAGCGCTC
CCCCTGCCACGGGCTGGGAAGGCGAGGTGCGGAAGGTGCTAAAGGAAGAT
TGGCAAGTAGTCTGCGGCATTATGGGGTTCTACACGACGCTTTATCTCGT
CTCTAAGCTGTTTTCTGGGGGCAAAAAAGCGGCTCCTGATACTGATGTTT
GCCGCCCGCCGCATTGTTGCGCATTCCTCGGCGCTCCGGCCTGCATTTAC
TCATGCCACCGGACGAGCGCAGTGGCTGCGTCCTCCAGCGCGACCAGCGC
GAGCAGTGAGGTCATTTCCATGGCCGACGACAAGTTCTCTGAGTACGTGG
GTAACTCTGAAAACATGCTCAAATGGGAGCAGAGTTTGAATGATCCGAAA
GCTTATGAGTAGGCTCCTACCCGAGTCGTGAGGCGGACATTGGCTGGCCA
TGGGAGCGCTCCCCCTGCCACGGGCTGGGAAGGCGAGGTGCGGAAGGTGC
TAAAGGAAGATTGGCAAGTAGTCTGCGGCATTATGGGGTTCTACACGACG
CTTTATCTCGTCTCTAAGCTGTTTTCTGGGGGCAAAAAAGCGGCTCCTGA
TACTGATGTTTGCCGCCCGCCGCATTGTTGCGCATTCCTCGGCGCTCCGG
CCTGCATTTACTCATGCCACCGGACGAGCGCAG

Synonyms

Publications