EWM29735.1, cds932 (CDS) Nannochloropsis gaditana

Overview
NameEWM29735.1
Unique Namecds932
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:760055..760132 -
Alignment locationCM002456.1:759763..759955 -
Alignment locationCM002456.1:759400..759539 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29735.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100022g46.834.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:760055..760132 -
CM002456.1supercontigCM002456.1:759763..759955 -
CM002456.1supercontigCM002456.1:759400..759539 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29735.1 vs. NCBI_GenBank
Match: gi|585112315|gb|EWM29735.1| (hypothetical protein Naga_100022g46 [Nannochloropsis gaditana])

HSP 1 Score: 282.337 bits (721), Expect = 2.306e-96
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0
Query:    1 MFAARRIVAHSSALRPAFTHATGRAQAPTRVVRRTLAGHGSAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYLVSKLFSGGKKAAPDTVAASSSATSASSEVISMADDKFSEYVGNSENMLKWEQSLNDPKAYE 136
            MFAARRIVAHSSALRPAFTHATGRAQAPTRVVRRTLAGHGSAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYLVSKLFSGGKKAAPDTVAASSSATSASSEVISMADDKFSEYVGNSENMLKWEQSLNDPKAYE
Sbjct:    1 MFAARRIVAHSSALRPAFTHATGRAQAPTRVVRRTLAGHGSAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYLVSKLFSGGKKAAPDTVAASSSATSASSEVISMADDKFSEYVGNSENMLKWEQSLNDPKAYE 136          
BLAST of EWM29735.1 vs. NCBI_GenBank
Match: gi|1173942778|gb|OQR91724.1| (hypothetical protein ACHHYP_04440 [Achlya hypogyna])

HSP 1 Score: 78.1814 bits (191), Expect = 6.328e-16
Identity = 51/120 (42.50%), Postives = 64/120 (53.33%), Query Frame = 0
Query:   18 FTHATGRAQAPTRVVR----RTLAGHG-SAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYLVSKLFSGGKKAAP--DTVAASSSATSASSEVISMADDKFSEYVGNSENMLKWEQSLN 130
             T   GR    TR ++    R +AGH  S PP TG E  +R  L ED+Q+V   +G YT L      F  GKK AP  + VAA SSATS    +I   DD F E+   + N+ KWE+SLN
Sbjct:   12 ITKMLGRLTQVTRAMKPAGSRGMAGHAHSGPPPTGIEAVIRSKLPEDYQIVMATLGIYTVLS-APLWFPSGKKEAPKVEAVAAPSSATSVIPSII---DDSFEEWAKVAGNLAKWEESLN 127          
BLAST of EWM29735.1 vs. NCBI_GenBank
Match: gi|813118882|ref|XP_012196091.1| (hypothetical protein SPRG_02150 [Saprolegnia parasitica CBS 223.65] >gi|641539534|gb|KDO33343.1| hypothetical protein SPRG_02150 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 76.2554 bits (186), Expect = 2.555e-15
Identity = 47/113 (41.59%), Postives = 63/113 (55.75%), Query Frame = 0
Query:   23 GRAQAPTRVVR----RTLAGHG-SAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYLVSKLFSGGKKAAPDTVAASSSATSASSEVISMADDKFSEYVGNSENMLKWEQSLN 130
            GR    TR ++    R +AGH  S PP TG E  +R  L ED+Q+V   +G YT L      F  GKK AP  V A ++ TS +S + S+ DD F E+   + N+ KWE+SLN
Sbjct:    3 GRLTQVTRAMKPAGSRGMAGHAHSGPPPTGIEAVIRSKLPEDYQIVMATLGIYTVLT-APLWFPSGKKEAPK-VEAVAAPTSTTSVIPSIIDDSFEEWAKVAGNIAKWEESLN 113          
BLAST of EWM29735.1 vs. NCBI_GenBank
Match: gi|669159164|ref|XP_008615144.1| (hypothetical protein SDRG_10906 [Saprolegnia diclina VS20] >gi|530733061|gb|EQC31303.1| hypothetical protein SDRG_10906 [Saprolegnia diclina VS20])

HSP 1 Score: 74.7146 bits (182), Expect = 1.588e-14
Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 0
Query:   18 FTHATGRAQAPTRVVR----RTLAGHG-SAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYLVSKLFSGGKKAAPDTVAASSSATSASSEVISMADDKFSEYVGNSENMLKWEQSLN 130
             T   GR    TR ++    R +AGH  S PP TG E  +R  L ED+Q+V   +G YT L      F   KK AP   A ++ A S +S + S+AD+ F E+   + NM KWE+SLN
Sbjct:   12 ITKMLGRLTQVTRAMKPAGSRGMAGHAHSGPPPTGIEAVIRSKLPEDYQIVMATLGIYTVLT-APLWFPSSKKEAPKVEAVTAPA-STNSVIPSIADETFEEWAKVAGNMAKWEESLN 127          
BLAST of EWM29735.1 vs. NCBI_GenBank
Match: gi|953489852|emb|CEG47218.1| (conserved hypothetical protein [Plasmopara halstedii])

HSP 1 Score: 69.707 bits (169), Expect = 7.951e-13
Identity = 44/108 (40.74%), Postives = 61/108 (56.48%), Query Frame = 0
Query:   27 APTRVVRRT-----LAGHGSAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYLVSKLFSGGKKAAPDTVAASSSATSASSEVISMADDKFSEYVGNSENMLKWEQSL 129
            APT V RRT     L GHG AP     E +VR  L +D+ +V   +G YTTL ++ KL    KK     + ++ S+TSAS  + S+ DD+F E+     N+ KWE+SL
Sbjct:    9 APTHV-RRTPAQCRLMGHGPAPVEGSLEAKVRHYLPKDYHIVLATLGAYTTLIMLFKLKPSKKKEEEIVIPSNLSSTSAS--IPSLFDDEFDEWSKLPGNLDKWEKSL 113          
BLAST of EWM29735.1 vs. NCBI_GenBank
Match: gi|325194592|emb|CCA28321.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 70.4774 bits (171), Expect = 8.152e-13
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 0
Query:   38 GHGSAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYLVSKLFSGGKKAAPDTVAASSSATSASSEVISMADDKFSEYVGNSENMLKWEQSLN 130
            GHG +PP TG+E +VR  L ED Q+V   +GFY T++ + KL    KK  P    A S+ T    EV S+ D++F ++   S N+ +WE+SL+
Sbjct:   60 GHGGSPP-TGFEAKVRAYLPEDHQIVLATLGFYATVFALCKLKPSKKKEEPIHAIADSTTT----EVPSLFDEEFDKWSQISGNLERWEKSLD 147          
BLAST of EWM29735.1 vs. NCBI_GenBank
Match: gi|673018022|ref|XP_008862972.1| (hypothetical protein H310_01599 [Aphanomyces invadans] >gi|574482175|gb|ETW09167.1| hypothetical protein H310_01599 [Aphanomyces invadans])

HSP 1 Score: 68.1662 bits (165), Expect = 3.698e-12
Identity = 45/117 (38.46%), Postives = 59/117 (50.43%), Query Frame = 0
Query:   23 GRAQAPTRVVR--------RTLAGHGSAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYLVSKLFSGGKKAAPDTVAASSSA-TSASSEVISMADDKFSEYVGNSENMLKWEQSLN 130
            GR    TR V+        R +A HG  P  TG E  +R  L  D  +V   +GFYT L      F  GKKA  +  AAS +A  +AS+E+ S+ DD F E+     N  KWE+SL+
Sbjct:    3 GRLSQVTRAVKPAAAAGQTRGMASHGPPPTYTGLEATIRAKLPNDHDIVLATLGFYTVL-TAPLWFPTGKKAKVEEPAASPAADVNASTEIPSLFDDNFDEWSKVPGNFAKWEKSLD 118          
BLAST of EWM29735.1 vs. NCBI_GenBank
Match: gi|1173961836|gb|OQS07748.1| (hypothetical protein THRCLA_20072 [Thraustotheca clavata])

HSP 1 Score: 65.0846 bits (157), Expect = 5.517e-11
Identity = 41/113 (36.28%), Postives = 60/113 (53.10%), Query Frame = 0
Query:   23 GRAQAPTRVVR----RTLAGHG-SAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYLVSKLFSGGKKAAPDTVAASSSATSASSEVISMADDKFSEYVGNSENMLKWEQSLN 130
            GR     R+++    R +AGH  S PP TG E  +R  L ED+Q+V   +G YT L      +   KK  P+    + + +S SS + S+ DD F E+   + N+ KWE+SLN
Sbjct:    3 GRLSNAARMMKPAGSRGMAGHAHSGPPPTGIEAVIRSKLPEDYQIVMATLGIYTVLS-APLWWPSSKK--PEAKVEAVAPSSGSSVIPSIIDDSFEEWAKVAGNLAKWEESLN 112          
BLAST of EWM29735.1 vs. NCBI_GenBank
Match: gi|698775924|ref|XP_009821006.1| (hypothetical protein H257_00156 [Aphanomyces astaci] >gi|574123131|gb|ETV88606.1| hypothetical protein H257_00156 [Aphanomyces astaci])

HSP 1 Score: 62.003 bits (149), Expect = 9.154e-10
Identity = 42/115 (36.52%), Postives = 56/115 (48.70%), Query Frame = 0
Query:   23 GRAQAPTRVVR-------RTLAGHGSAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYLVSKLFSGGKKAAPDTVAASSSATSASSEVISMADDKFSEYVGNSENMLKWEQSLN 130
            GR    TR V+       R +A HG  P  TG E  +R  L  D  +V   +G Y  L      F  GKKA    V   ++A++AS+EV S+ DD F E+     N  KWE+SL+
Sbjct:    3 GRLTQVTRAVKPAAAGQTRGMASHGPPPTYTGLEATIRAKLPNDHDIVLATLGAYAVL-TAPFWFPTGKKA---VVEEPAAASNASTEVPSLFDDNFDEWSKIPGNFAKWEKSLD 113          
BLAST of EWM29735.1 vs. NCBI_GenBank
Match: gi|299469850|emb|CBN76704.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 60.8474 bits (146), Expect = 2.767e-9
Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = 0
Query:   33 RRTLAGHGSAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYLVSK----LFSGGKKAAPDTVAASSSATSA-SSEVISMADDKFSEYVGNSENMLKWEQSLN 130
            +R +AG G+AP  TGWE ++R+ L +D  VV  I GFY  LY+V K    LFS  KK   + VAA   A+SA SS++    +D F +++  + NM K+  +++
Sbjct:   21 KRGMAG-GAAPKYTGWEAQIREKLPKDEHVVVAISGFYVGLYVVCKGISALFSSPKK---EEVAAPVVASSATSSDIPDGYEDNFWQWLEGAGNMEKYLATID 119          
The following BLAST results are available for this feature:
BLAST of EWM29735.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112315|gb|EWM29735.1|2.306e-96100.00hypothetical protein Naga_100022g46 [Nannochlorops... [more]
gi|1173942778|gb|OQR91724.1|6.328e-1642.50hypothetical protein ACHHYP_04440 [Achlya hypogyna... [more]
gi|813118882|ref|XP_012196091.1|2.555e-1541.59hypothetical protein SPRG_02150 [Saprolegnia paras... [more]
gi|669159164|ref|XP_008615144.1|1.588e-1439.83hypothetical protein SDRG_10906 [Saprolegnia dicli... [more]
gi|953489852|emb|CEG47218.1|7.951e-1340.74conserved hypothetical protein [Plasmopara halsted... [more]
gi|325194592|emb|CCA28321.1|8.152e-1340.86conserved hypothetical protein [Albugo laibachii N... [more]
gi|673018022|ref|XP_008862972.1|3.698e-1238.46hypothetical protein H310_01599 [Aphanomyces invad... [more]
gi|1173961836|gb|OQS07748.1|5.517e-1136.28hypothetical protein THRCLA_20072 [Thraustotheca c... [more]
gi|698775924|ref|XP_009821006.1|9.154e-1036.52hypothetical protein H257_00156 [Aphanomyces astac... [more]
gi|299469850|emb|CBN76704.1|2.767e-939.81conserved unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna932rna932Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications