EWM29762.1, cds911 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29762.1 vs. NCBI_GenBank
Match: gi|585112342|gb|EWM29762.1| (atp-dependent protease la [Nannochloropsis gaditana]) HSP 1 Score: 941.799 bits (2433), Expect = 0.000e+0 Identity = 465/465 (100.00%), Postives = 465/465 (100.00%), Query Frame = 0 Query: 1 MLHRMVRRRPWVCGLTEPATCLRLQPEGSSGTASAKFPSCRGCRHPKSHTFSTGADTALSIVRTQSGNRKLSEILNEAEKAWQDSQYPSKITFQLLHLHDELEDQDTDGAIQATAPTLIATAERNQLLDTDLMTTERGNPAREKEELSWKHPSTATCISVALPHAQEVVLFRCHDASFPQLRRKGVQGAGSDGADASALQDMVLQRQPQLLLLIAEPNFPLAELSSRLECIFDKSYVLAAYARAVLPALRPPRILALGGAETPAPGPEGGAEGGDATVPRALGLAVFGDQTLSADDAGRLACCLLGSSWLGNFSLDQALTRQLFVPRHWTLGRQPPTHRYRSVSDTQARDLPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHVLTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGGGQPPGRG 465 MLHRMVRRRPWVCGLTEPATCLRLQPEGSSGTASAKFPSCRGCRHPKSHTFSTGADTALSIVRTQSGNRKLSEILNEAEKAWQDSQYPSKITFQLLHLHDELEDQDTDGAIQATAPTLIATAERNQLLDTDLMTTERGNPAREKEELSWKHPSTATCISVALPHAQEVVLFRCHDASFPQLRRKGVQGAGSDGADASALQDMVLQRQPQLLLLIAEPNFPLAELSSRLECIFDKSYVLAAYARAVLPALRPPRILALGGAETPAPGPEGGAEGGDATVPRALGLAVFGDQTLSADDAGRLACCLLGSSWLGNFSLDQALTRQLFVPRHWTLGRQPPTHRYRSVSDTQARDLPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHVLTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGGGQPPGRG Sbjct: 1 MLHRMVRRRPWVCGLTEPATCLRLQPEGSSGTASAKFPSCRGCRHPKSHTFSTGADTALSIVRTQSGNRKLSEILNEAEKAWQDSQYPSKITFQLLHLHDELEDQDTDGAIQATAPTLIATAERNQLLDTDLMTTERGNPAREKEELSWKHPSTATCISVALPHAQEVVLFRCHDASFPQLRRKGVQGAGSDGADASALQDMVLQRQPQLLLLIAEPNFPLAELSSRLECIFDKSYVLAAYARAVLPALRPPRILALGGAETPAPGPEGGAEGGDATVPRALGLAVFGDQTLSADDAGRLACCLLGSSWLGNFSLDQALTRQLFVPRHWTLGRQPPTHRYRSVSDTQARDLPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHVLTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGGGQPPGRG 465
BLAST of EWM29762.1 vs. NCBI_GenBank
Match: gi|489378460|ref|WP_003285170.1| (ATP-dependent protease [Pseudomonas stutzeri] >gi|379066627|gb|EHY79370.1| ATP-dependent protease La [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]) HSP 1 Score: 65.855 bits (159), Expect = 7.379e-9 Identity = 41/108 (37.96%), Postives = 50/108 (46.30%), Query Frame = 0 Query: 351 LPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHVLTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGG 458 LPLF L +VLFPGC L L+VFE RY MV QCL+ FG+VH D +G+ PA H+ + DW+Q P GL V GG Sbjct: 3 LPLFPLNTVLFPGCFLDLQVFEARYLDMVSQCLKAGHGFGVVHILDG--------------KEVGAAPAEFSHIGCEALIR----------DWQQLPNGLLGIRVEGG 86
BLAST of EWM29762.1 vs. NCBI_GenBank
Match: gi|1097950408|emb|SFJ44059.1| (hypothetical protein SAMN05216194_103510 [Pseudomonas kunmingensis]) HSP 1 Score: 65.855 bits (159), Expect = 7.739e-9 Identity = 43/112 (38.39%), Postives = 51/112 (45.54%), Query Frame = 0 Query: 351 LPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHV----LTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGG 458 LPLF L +VLFPGC L L++FE RY MV QCL+ FG+VH D +G+ PA HV L R DW+Q P GL V GG Sbjct: 3 LPLFPLDTVLFPGCFLDLQIFEARYLDMVSQCLKAGHGFGVVHILDG--------------KEVGAAPAAFSHVGCEALIR--------------DWQQLPNGLLGIRVEGG 86
BLAST of EWM29762.1 vs. NCBI_GenBank
Match: gi|953980091|ref|WP_058065017.1| (ATP-dependent protease [Pseudomonas sp. TTU2014-105ASC] >gi|953680604|gb|KRW66658.1| ATP-dependent protease [Pseudomonas sp. TTU2014-105ASC]) HSP 1 Score: 65.4698 bits (158), Expect = 1.040e-8 Identity = 41/108 (37.96%), Postives = 50/108 (46.30%), Query Frame = 0 Query: 351 LPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHVLTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGG 458 LPLF L +VLFPGC L L+VFE RY MV QCL+ FG+VH D +G+ PA H+ + DW+Q P GL V GG Sbjct: 3 LPLFPLDTVLFPGCFLDLQVFEARYLDMVSQCLKAGHGFGVVHILDG--------------KEVGAAPAEFSHIGCEALIR----------DWQQLPSGLLGIRVEGG 86
BLAST of EWM29762.1 vs. NCBI_GenBank
Match: gi|817651467|ref|WP_046617671.1| (ATP-dependent protease [Pseudomonas stutzeri] >gi|816240340|gb|KKJ98792.1| ATP-dependent protease [Pseudomonas stutzeri] >gi|1088373858|gb|OHC16249.1| ATP-dependent protease [Pseudomonadales bacterium GWC2_63_15]) HSP 1 Score: 65.4698 bits (158), Expect = 1.060e-8 Identity = 42/112 (37.50%), Postives = 51/112 (45.54%), Query Frame = 0 Query: 351 LPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHV----LTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGG 458 LPLF L +VLFPGC L L++FE RY MV QCL+ FG+VH D +G+ PA H+ L R DW+Q P GL V GG Sbjct: 3 LPLFPLDTVLFPGCFLDLQIFEARYLDMVSQCLKAGHGFGVVHILDG--------------KEVGAAPAAFSHIGCEALIR--------------DWQQLPNGLLGIRVEGG 86
BLAST of EWM29762.1 vs. NCBI_GenBank
Match: gi|751307585|ref|WP_041015888.1| (MULTISPECIES: ATP-dependent protease [Pseudomonas stutzeri group] >gi|703403357|emb|CEG54937.1| ATP-dependent protease La [Pseudomonas xanthomarina] >gi|780824802|gb|KJS28114.1| ATP-dependent protease [Pseudomonas sp. BRH_c35]) HSP 1 Score: 65.4698 bits (158), Expect = 1.090e-8 Identity = 42/112 (37.50%), Postives = 51/112 (45.54%), Query Frame = 0 Query: 351 LPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHV----LTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGG 458 LPLF L +VLFPGC L L++FE RY MV QCL+ FG+VH D +G+ PA H+ L R DW+Q P GL V GG Sbjct: 3 LPLFPLDTVLFPGCFLDLQIFEARYLDMVSQCLKAGHGFGVVHILDG--------------KEVGAAPAAFSHIGCEALIR--------------DWQQLPNGLLGIRVEGG 86
BLAST of EWM29762.1 vs. NCBI_GenBank
Match: gi|1053081888|gb|OCX98758.1| (ATP-dependent protease [Pseudomonas sp. K35]) HSP 1 Score: 65.0846 bits (157), Expect = 1.177e-8 Identity = 42/112 (37.50%), Postives = 51/112 (45.54%), Query Frame = 0 Query: 351 LPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHV----LTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGG 458 LPLF L +VLFPGC L L++FE RY MV QCL+ FG+VH D +G+ PA H+ L R DW+Q P GL V GG Sbjct: 3 LPLFPLDTVLFPGCFLDLQIFEARYLDMVSQCLKAGHGFGVVHILDG--------------KEVGAAPAAFSHIGCEALIR--------------DWQQLPNGLLGIRVEGG 86
BLAST of EWM29762.1 vs. NCBI_GenBank
Match: gi|653577318|ref|WP_027590948.1| (MULTISPECIES: ATP-dependent protease [Pseudomonas] >gi|733455583|gb|KHL70861.1| ATP-dependent protease [Pseudomonas flexibilis] >gi|735690814|gb|KHO64422.1| ATP-dependent protease [Pseudomonas flexibilis] >gi|1081491100|emb|SCY06177.1| hypothetical protein SAMN02927929_01416 [Pseudomonas flexibilis] >gi|1131828221|emb|SIP87987.1| hypothetical protein SAMN05421672_101148 [Pseudomonas flexibilis]) HSP 1 Score: 65.0846 bits (157), Expect = 1.247e-8 Identity = 43/108 (39.81%), Postives = 52/108 (48.15%), Query Frame = 0 Query: 351 LPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHVLTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGG 458 LPLF L +VLFPGC+L L++FEPRY M+ CL+R E FG+V TL PAP ++ G L R DWRQ GL V GG Sbjct: 3 LPLFPLDTVLFPGCNLDLQLFEPRYLDMLSACLKRGEGFGVV-------TLLEGAEVGPAPR---AYSEIGCEALIR--------------DWRQQSNGLLGIRVEGG 86
BLAST of EWM29762.1 vs. NCBI_GenBank
Match: gi|896400729|ref|WP_049338824.1| (ATP-dependent protease [Pseudomonas stutzeri]) HSP 1 Score: 64.6994 bits (156), Expect = 1.912e-8 Identity = 44/108 (40.74%), Postives = 50/108 (46.30%), Query Frame = 0 Query: 351 LPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHVLTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGG 458 LPLF L +VLFPGC L L++FE RY MV QCL+ FG+VH D S APA S G L R DW+Q P GL V GG Sbjct: 3 LPLFPLDTVLFPGCMLDLQIFEARYLDMVSQCLKAGHGFGVVHILD-----GSEVGAAPA-----SFARVGCEALIR--------------DWQQLPNGLLGIRVEGG 86
BLAST of EWM29762.1 vs. NCBI_GenBank
Match: gi|780913224|gb|KJS80812.1| (ATP-dependent protease [Pseudomonas sp. BICA1-14]) HSP 1 Score: 64.6994 bits (156), Expect = 1.931e-8 Identity = 41/108 (37.96%), Postives = 50/108 (46.30%), Query Frame = 0 Query: 351 LPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHVLTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGG 458 LPLF L +VLFPGC L L++FE RY MV QCL+ FG+VH D +G+ PA H+ G DW+Q P GL V GG Sbjct: 3 LPLFPLDTVLFPGCFLDLQIFEARYLDMVSQCLKAGHGFGVVHILDG--------------REVGAAPAAFSHI----------GCEALIRDWQQLPNGLLGIRVEGG 86 The following BLAST results are available for this feature:
BLAST of EWM29762.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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