rna911, rna911 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna911
Unique Name	rna911
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3499
Alignment location	CM002456.1:711456..714688 +

Link to JBrowse

Properties


Property Name	Value
Product	atp-dependent protease la
Orig transcript id	gnl\|cribi\|Naga_100022g22.861.mrna
Orig protein id	gnl\|cribi\|Naga_100022g22.861
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:711456..714688 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100022g22	gene874	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna911	rna911-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29762.1	cds911	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:711456..714688+
coding sequence from alignment at CM002456.1:711456..714688+

mRNA sequence

>rna911 ID=rna911|Name=rna911|organism=Nannochloropsis gaditana|type=mRNA|length=3499bp
CAACACGATAAGAGGAACAATTCCTGGGCGAGATAAGAGCACGTGTCAGG
CCCCCGCCCTCCGGCATCGAGTGTGATGCACAAGTCATACACGTGGAAAC
TCAAAGCTGGAGGCACCGAGCACGGGGAGGCTGTGTCCCGGCGTCTGAGT
GCTCTCTTCGCGCTGTATCAGACCTACCCCGACCTCCGTGACGGACGAGG
CGGCAAGCCCAGGAAAATTCCCGGGAAAGACTCACAAATTCACCGATCCG
CTTGTCCTGCAAATAAGCATCACTAACGCAAGCTTCTTTCCTCTCAGTTT
CAACTTGAAATTTCAGGGGGGTTGCTAGAGTATTACTCGGTTTTTACGTG
CGAGGAGGGGGGGAAAGCTTGAATCCCGGTCCTGCCTCGTGAGCGCGAAG
GTTTTCTCCAAACGACATGGCGGCTGCCATAGCACCAAGCGCGACGTCAT
CTACCTCCTCGGCTTCATCACCACCGCCTTCCTCGATGCCCCTGCTGGAT
CGACACCCGAGCAACTCCTCCACGGGTCGGAGCAGTCGTAGGTTGGCCGC
CATGAAGGGTTCTGCGGGGGCGGACTCAGCCGCGGTCGCCCCGGTCCCTG
CGCGAGAAACCAATGCTGTCGGGAATGGGGGGGCGGGGCACGGTAATCGC
GAGGACAGCTGCAAAATACGAGGTCGGGAGGAGGAGGTCGAAGCGCCCTC
CGGTTCCATAACCTTGACGCCCTCCAATTCGGACGAGCCCAAGGCGAAGA
GGGCACGCCAGCAACTTTCTTTGGTCATTCAGCCCCCGGTCCCGCGCTAC
CCGTTCGTGAATAACTTTTTCGACGTCCACGTCTTCCTCTTTGACGAGGC
CAACCAAGTGAAGAGCGGCGATGAGTTCGAGCTGCCCTTGCGTGTCCGGT
TGGTCTTCAACGAGAAGGCGCGCTCCTCTGTGGAGAAGGACGTGATGGAG
GTGGACCCCGCTGTCCCCCGCCTGGGCCGCCACGGCAAGTGCAGCTTTCG
CGTGCGCCTGAGAGACGTGTCCATGAACTTCGACAACCGCGATTTCCGCC
TGCAGGTGGCGGTGGGGGGGGGCGCAAAGGGAAGCGGGCTGGCAGTCAGC
AAATATTTTGTGGCCCCTGTTTTTTCGGACCCGATGACCGTGGTTCGGCA
CCGACTGCGGATTCGCTCGGAGACTCAGCCGCCGACCGTATGGTACAAGG
ACGAGGGTGGTCGGGACAAGTGCATGGAGGTGGCGGTGGATCTGGTGGAC
TCGGAGGGCCGGCGCGTGCACGGACAGGAGGTGCCGCTCCGGGTCTCGTT
GCTCTACGAGGACTTGCAGCCGGTGGGGAAGCAGAACATTCTCAAGCTCT
CCTCGGACTCACGGCAGAGCATCGATCATACGGGCACGGCCATGCTGCGC
CTGCGGATCGAGGACGTGTCAAAAAACCACCAGAGCAAAGGCTTCGTAAT
CCAGGTGGGGGCAGACGTGCAGCACGCGCCGCTGAACTCGGACATCTCTC
CCGACACGAGCACCTCTGTATCTGTCCGGTCGAAGCGGAATCGGCGGTCT
AAGCAGGGGAGAGGGGCCATGGGAGAGCGGGGGGGGGGGCTTGGAGGGGT
TAACGGAGGCGGGGACGAGGACATCTCCCTCGTGGGACACACCCTGTCGC
GGAACTCCATCGATTTGGCCATGCCGGTGGTCTCCCACTCCCTCCTCCAG
GAAACGGCGCAACTAGCGATGCTCCCCTCCGTAAACGGAGGCGGCGGAGA
GGCAGGAAGCGATGCGAGGGGCGGGGTTGGCCTGGGCCTGGGGATAGGAC
CACACGGGGACGCGGGGGCGTCTGGAGGAGGCGCAGCTCCTTTGATGAAG
GCCTTGTCGAACGTGATATCCTGGACAAGGACGGTCGTGAACGGGCTGTA
CCAGCTTCAATGGCAGCTGATCGGCTACGAGTCAAAGCCAGACGGGGCGC
CTGACGTAAACAAGCCCCTTTTCAACATCCAGAACCCCAACGCCGTCATC
ACGAACATCTTGCACACGTACCGCGGGGAGACGATGGAGCAGCTGCGGTA
TCTGGTGCTAGCCTTGGAAGCCATGGAAGGGGCATGGCGGGGCGGGCAGG
GGGAGGGAGAGGGCTTGGGGCGTCGTGGGACTGGGATCGGGATGGACGCC
GGGGGAGGGCAGAGGGAGGGACCGCCCCTGGCGACAGCGTCGGGGGGGCG
AGAAGGGGAGGGCAATTTTGGAAGGGATGGATTTACGAGACAAGGGGGTG
CGTCGACGTTTGCTGGGTCGATGGATCACGGGGTCGGGGCGGGGAGGAGC
AAGGGCGAGGAGGGACAGCTGTCGCGCCAGCAGTCGAACCACTTCCTCCA
AGATACCCTCCAGCGCCCCTCCCCCAACCTCATGCCGCCAGTGGGGCCTA
TGCTGCCGCCCATGATTCGCGGGCGAAGCGGTTTGGGAGGGAACATGCCA
GCAGACGCGTCAGGGGGGGGGACAGGCGGGGCAGGGGGGGAGTTCGGCGG
GGTGGGGCTGGTGCCGCTTGTGCGCGAGTCGACGTACGAGCTCTTGGCGG
GCATGGACCCGTCCTGGTTCGGGATGGAGGGCGCGGAGATGTCACCCAGT
GCGGCGACTGAGGCACAGGTCCAGATGATTATGGCGAAGGAATACTACTC
AGAGACGTACGAGACTCTGGGCTTCCCGGCATTCGACCTGAAACACAACC
TCCTGGGATTTTACAAAGAGGCTCGGAACGACCAGGGCCAGACGGTGGCC
TTGTACGTCCCTATCCCGCCGCAATTTTCTGAAGAAGATCGTCGGGCTGT
GGATGAGATGTTGGAGACGGAGCTGAAGGCAGGGGGGGCAGCGGTCGTGC
AGATAGCGAACGAGGACATAAGCCAGCTGAAGGAGCGGGTCTTGACGTAC
CACTGGTCCCAGGAAAGCAGGGACGAGCGGGTTTTGGGGGGAGGAGATGA
TGACGGGGATGTCATTGGGTAGGGAGGAGTAGAAAGGGCGGAACCGCGTC
GAGTCTAGGGTGAGAAGTGAGCAAGCTAGCCTGGAGGCTCGGGTCGTCCT
GCACATCGATGAAAGCTTGAGCTTGCGCGATTATTGATAAAGACAACAAT
TTGATTACCGACGGAAAAGCGTGAAGCACACAGCACTCTATTCACAAAAA
GACTGCATGGCAGGCGGCGAGGTGTATGACGTTTGAGTACTTGAGCAGAC
AAATGTGTGGTGTACATGCTTGCCTAATTGTCGAGATGGACGAGAAAAAA
GAGCGAAATTAGGCAGGACATTGGGAAAGCGAAATTTGTGGTATTGATCT
CACGCATCGCTTCTCAATGAGCCTTGTCCTTCTTCGTGAGTGCGACGTCC
ATGGCATTGGTCGTGAAGTGAGCGGGGGGGGGGTTACGAGCTGAGGAATG
TACAGAAGTATACGAAAGCCAACACATGGGAACATCACTTTCAGCAACAC
AACCCAGAAAGAAATATAAGCAGCGGTGCTTGCCACGGGTTTTGCGACG

protein sequence of rna911

>rna911-protein ID=rna911-protein|Name=rna911|organism=Nannochloropsis gaditana|type=polypeptide|length=465bp
MLHRMVRRRPWVCGLTEPATCLRLQPEGSSGTASAKFPSCRGCRHPKSHT
FSTGADTALSIVRTQSGNRKLSEILNEAEKAWQDSQYPSKITFQLLHLHD
ELEDQDTDGAIQATAPTLIATAERNQLLDTDLMTTERGNPAREKEELSWK
HPSTATCISVALPHAQEVVLFRCHDASFPQLRRKGVQGAGSDGADASALQ
DMVLQRQPQLLLLIAEPNFPLAELSSRLECIFDKSYVLAAYARAVLPALR
PPRILALGGAETPAPGPEGGAEGGDATVPRALGLAVFGDQTLSADDAGRL
ACCLLGSSWLGNFSLDQALTRQLFVPRHWTLGRQPPTHRYRSVSDTQARD
LPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGT
LASITVRAPAPARLGSHPAPGPHVLTRSPRSVAGGLPDGGGDWRQHPQGL
RHAPVSGGGQPPGRG

mRNA from alignment at CM002456.1:711456..714688+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna911 ID=rna911|Name=rna911|organism=Nannochloropsis gaditana|type=mRNA|length=3233bp|location=Sequence derived from alignment at CM002456.1:711456..714688+ (Nannochloropsis gaditana)
AGCTTTGAGTTTCCACGTGTATGACTTGTGCATCACACTCGAtgccggag
ggcgggggcctgACACGTGCTCTTATCTCGCCCAGGAATTGTTCCTCTTA
TCGTGTTGATCTCCGCCGCGGCCTCGCTGcctctcgcccctttccGATGT
CGAGATCGCCGCCTCAGGCGCCACAGGCGATGTTCGCAGTCGGGTGACGA
GAAATGTGACTCACCAAGTCTTCGGCCAGACAGCCTACTCCCCAGGAAAT
ATGCTACATCGCATGGTGCGGCGGCGGCCCTGGGTGTGTGGCTTAACAGA
GCCGGCGACGTGCCTGCGATTGCAGCCTGAGGGGTCTTCCGGTACTGCCT
CAGCCAAGTTTCCCTCTTGCCGGGGCTGCCGCCATCCCAAATCCCATACA
TTTTCTACCGGCGCGGACACTGCCTTGAGTATCGTGCGGACGCAATCTGG
AAATCGCAAGCTTTCTGAGATTCTGAATGAAGCTGAGAAAGCATGGCAAG
ACTCACAGTATCCGTCGAAAATCACCTTCCAACTGCTGCATCTCCATGAC
GAGCTTGAAGACCAAGATACGGACGGGGCAATTCAAGCTACTGCGCCGAC
CTTGATCGCCACTGCTGAGCGCAATCAACTTCTCGATACGGATTTGATGA
CAACGGAAAGAGGCAACCCtgcgagggaaaaagaagagctCTCATGGAAG
CACCCGAGCACCGCAACATGCATCAGCGtcgcccttccccacgcccaggA
GGTTGTCCTCTTTCGATGCCACGACGCCTCATTCCCTCAACTCCGACGCA
AAGGAGTACAAGGTGCCGGAAGTGACGGTGCGGATGCATCAGCGTTGCAG
GATATGGTGCTGCAACGACAACCGCAGCTTTTGCTCCTCATCGCGGAGCC
TAACTTTCCCCTGGCCGAGTTGAGCAGTCGCCTTGAGTGCATTTTTGACA
AAAGCTATGTGCTGGCTGCATATGCGCGTGCCGTGCTTCCAGCcctgcgc
cctccacgcATCCTGGCGCTCGGCGGAGCTGAGACTCCCGCTCCGGGccc
cgagggaggagcggagggaggagacgccaCGGTGCCGCGGGCCCTTGGAC
TGGCCGTGTTCGGCGACCAGACCCTTTCCGCGGATGACGCGGGCCGCTTG
GCCTGCTGCCTCTTGGGGTCTTCGTGGCTGGGCAACTTTTCCTTGGACCA
GGCCCTGACGCGGCAACTCTTCGTCCCCCGACACTGGACGCTGGGGCGGc
agcctcccacccaccGGTACCGGTCAGTAAGCGACACCCAGGCCCGGGAC
CTTCCTTTATTTCGACTGCAGTCTGTGCTCTTCCCGGGCTGCTCCCTCAT
CCTGAAAGTATTCGAGCCCCGGTACCGGCGCATGGTGAAGCAGTGCCTGG
AGCGGAATGAGCCCttcggcctcgtccacgcccgGGACACGGTCGGGACC
CTGGCCTCCATCACGGTAcgtgcccctgcccctgcacGCCTCGGCTCCCA
CCCTGCACCCGGCCCCCACGTGCTCACTCGTTCCCCTCGCTCGGTCGCAG
GAGGTCTAccggatggaggaggagactggCGTCAGCATCCTCAGGGTCTC
CGGCACGCGCCGGTTTCAGGTGGAGGGCAGCCGCCTGGCCGAGGATAGCT
TCGGGCTCCTGACGGCGACGCGGGCCCGCTTCTTCGACGAGGACccggtg
gaggacctggaggagctcgaggcaCTCCGGCTGCAGGCGCGCACCTGCCT
GACGAGCTCGCTggccgcggcctccgcctcagcCATgggcccgcctcccc
ccttgtctcTCTTGCAGGATGCGCCCTTGCGACCGTCgcctggggaaggg
aaggacgggaacgGGCAGAGCACAAGGGGCCAGCCGCGgtccggggggag
ggagcagacggggggcgtggaggagctcgccagggccttggcgaacgagt
ccttcctcctgagccAGTGGCTGGTGGACAGCTACCAGAGCTTGTTGCCG
GATGGCAAAAAGGTTGAATGGCTCCGGACTCGGTCGACCAGGGAGCGCAT
GAGGGGATGTTTGGACTTGCTGCTGAGGCTCgtcagagaggggaaaggca
gggtgAGGGGATCGACCGAgccaggcaaggagggctccGTGTGAaccaaa
ggaaggagaagagaggggcttGCATGCCTTCATGGGTAGCTATTGGCAAC
AAGATCTTTGTCGTActggcctcctccgtgaCTCATTCTTTGGTGCTGGG
GCTGTGCTCTATtcggcgccctctcccatAGGTTTCCAGGGAGGTGTGCA
CGCTGCACCGTAGTCTTTTCCTTCATACGAAGCATGCGCGTCCGTGACAT
ACTATATTCCGCAATAGAACCCAAACCCCTGCCCGTGATGCATCGAAGTC
GCTGAGCTCGCATCGGGCCATCCTCACCTTTCCTTGCTGGCCTCTGCCCA
CGTCCTCGTGGTGGCCGTGCATGCATTCAGGGGCAGCTTTCGGGCACCTC
CGCTGTATGCTCTGGAAATTGTCATCCTAGGAGAGATCGCGCAGGTTGAA
CTGTGGGGGATGACAAGGGAAAGCTGTCAAGAAAGTCTCTTTCAAAGTGG
AAGGTATCCTCATCTATTAGTATACTAGGCTCACAAAGCCAGTTCCAAAA
TGCAGCAACAAATGAACTAGATAAACAAGTGAGTACTCAACACATGCACT
CTTTATCTTACCCCCGACCGTTCCATTCACGTACGATGTCTCCAAAGTTA
TTGTAGAAGCCTTTGTGTACTTGCTTCTCGCCGCCCAGATAACCATCTCC
AGCCGCCAAGTCCATGCCGCtcgctccgtcctcctcgagaaATCCTCGAC
TTTGCCATCTCTCTGCACTGGAGTCTTTGCCTGTACTCGACACTTTAAAC
CCCCGGACCCGCTGCCGACCACCTTCGCGGGGTGGAGCGTAGTCCGTTGT
GCTCCACATGGCGAGTGACAGTAAGGCTTCCTGCGGCGTCCCTCTAAGAA
ATATTGATATGTGCAACGTCACGAGTCTTAGGAGAAGATGCACAATGGTA
ACGCCCGAGTCGCCCCGTGAATCACGACACCTCTTTTGTGGGGAGGAATT
CGCGCAGACAACGTAGGGACCCCACTCGAATCATGGCGCCCTTGGAACCT
GCGAAATAATACATCGACGGTCTCCCTTCGTGCTAATGTGCCATAGGGAT
AGCCTCCTGAGTCCTTGATAGCGTAGCAACAAT

Coding sequence (CDS) from alignment at CM002456.1:711456..714688+

>rna911 ID=rna911|Name=rna911|organism=Nannochloropsis gaditana|type=CDS|length=1398bp|location=Sequence derived from alignment at CM002456.1:711456..714688+ (Nannochloropsis gaditana)
ATGCTACATCGCATGGTGCGGCGGCGGCCCTGGGTGTGTGGCTTAACAGA
GCCGGCGACGTGCCTGCGATTGCAGCCTGAGGGGTCTTCCGGTACTGCCT
CAGCCAAGTTTCCCTCTTGCCGGGGCTGCCGCCATCCCAAATCCCATACA
TTTTCTACCGGCGCGGACACTGCCTTGAGTATCGTGCGGACGCAATCTGG
AAATCGCAAGCTTTCTGAGATTCTGAATGAAGCTGAGAAAGCATGGCAAG
ACTCACAGTATCCGTCGAAAATCACCTTCCAACTGCTGCATCTCCATGAC
GAGCTTGAAGACCAAGATACGGACGGGGCAATTCAAGCTACTGCGCCGAC
CTTGATCGCCACTGCTGAGCGCAATCAACTTCTCGATACGGATTTGATGA
CAACGGAAAGAGGCAACCCtgcgagggaaaaagaagagctCTCATGGAAG
CACCCGAGCACCGCAACATGCATCAGCGtcgcccttccccacgcccaggA
GGTTGTCCTCTTTCGATGCCACGACGCCTCATTCCCTCAACTCCGACGCA
AAGGAGTACAAGGTGCCGGAAGTGACGGTGCGGATGCATCAGCGTTGCAG
GATATGGTGCTGCAACGACAACCGCAGCTTTTGCTCCTCATCGCGGAGCC
TAACTTTCCCCTGGCCGAGTTGAGCAGTCGCCTTGAGTGCATTTTTGACA
AAAGCTATGTGCTGGCTGCATATGCGCGTGCCGTGCTTCCAGCcctgcgc
cctccacgcATCCTGGCGCTCGGCGGAGCTGAGACTCCCGCTCCGGGccc
cgagggaggagcggagggaggagacgccaCGGTGCCGCGGGCCCTTGGAC
TGGCCGTGTTCGGCGACCAGACCCTTTCCGCGGATGACGCGGGCCGCTTG
GCCTGCTGCCTCTTGGGGTCTTCGTGGCTGGGCAACTTTTCCTTGGACCA
GGCCCTGACGCGGCAACTCTTCGTCCCCCGACACTGGACGCTGGGGCGGc
agcctcccacccaccGGTACCGGTCAGTAAGCGACACCCAGGCCCGGGAC
CTTCCTTTATTTCGACTGCAGTCTGTGCTCTTCCCGGGCTGCTCCCTCAT
CCTGAAAGTATTCGAGCCCCGGTACCGGCGCATGGTGAAGCAGTGCCTGG
AGCGGAATGAGCCCttcggcctcgtccacgcccgGGACACGGTCGGGACC
CTGGCCTCCATCACGGTAcgtgcccctgcccctgcacGCCTCGGCTCCCA
CCCTGCACCCGGCCCCCACGTGCTCACTCGTTCCCCTCGCTCGGTCGCAG
GAGGTCTAccggatggaggaggagactggCGTCAGCATCCTCAGGGTCTC
CGGCACGCGCCGGTTTCAGGTGGAGGGCAGCCGCCTGGCCGAGGATAG

Synonyms

Publications