EWM29762.1, cds911 (CDS) Nannochloropsis gaditana

Overview
NameEWM29762.1
Unique Namecds911
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:711706..713103 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29762.1
Productatp-dependent protease la
Orig transcript idgnl|cribi|Naga_100022g22.861.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:711706..713103 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004176ATP-dependent peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
GO:0006508proteolysis
Vocabulary: INTERPRO
TermDefinition
IPR015947PUA-like_domain
IPR003111Pept_S16_N
Homology
BLAST of EWM29762.1 vs. NCBI_GenBank
Match: gi|585112342|gb|EWM29762.1| (atp-dependent protease la [Nannochloropsis gaditana])

HSP 1 Score: 941.799 bits (2433), Expect = 0.000e+0
Identity = 465/465 (100.00%), Postives = 465/465 (100.00%), Query Frame = 0
Query:    1 MLHRMVRRRPWVCGLTEPATCLRLQPEGSSGTASAKFPSCRGCRHPKSHTFSTGADTALSIVRTQSGNRKLSEILNEAEKAWQDSQYPSKITFQLLHLHDELEDQDTDGAIQATAPTLIATAERNQLLDTDLMTTERGNPAREKEELSWKHPSTATCISVALPHAQEVVLFRCHDASFPQLRRKGVQGAGSDGADASALQDMVLQRQPQLLLLIAEPNFPLAELSSRLECIFDKSYVLAAYARAVLPALRPPRILALGGAETPAPGPEGGAEGGDATVPRALGLAVFGDQTLSADDAGRLACCLLGSSWLGNFSLDQALTRQLFVPRHWTLGRQPPTHRYRSVSDTQARDLPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHVLTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGGGQPPGRG 465
            MLHRMVRRRPWVCGLTEPATCLRLQPEGSSGTASAKFPSCRGCRHPKSHTFSTGADTALSIVRTQSGNRKLSEILNEAEKAWQDSQYPSKITFQLLHLHDELEDQDTDGAIQATAPTLIATAERNQLLDTDLMTTERGNPAREKEELSWKHPSTATCISVALPHAQEVVLFRCHDASFPQLRRKGVQGAGSDGADASALQDMVLQRQPQLLLLIAEPNFPLAELSSRLECIFDKSYVLAAYARAVLPALRPPRILALGGAETPAPGPEGGAEGGDATVPRALGLAVFGDQTLSADDAGRLACCLLGSSWLGNFSLDQALTRQLFVPRHWTLGRQPPTHRYRSVSDTQARDLPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHVLTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGGGQPPGRG
Sbjct:    1 MLHRMVRRRPWVCGLTEPATCLRLQPEGSSGTASAKFPSCRGCRHPKSHTFSTGADTALSIVRTQSGNRKLSEILNEAEKAWQDSQYPSKITFQLLHLHDELEDQDTDGAIQATAPTLIATAERNQLLDTDLMTTERGNPAREKEELSWKHPSTATCISVALPHAQEVVLFRCHDASFPQLRRKGVQGAGSDGADASALQDMVLQRQPQLLLLIAEPNFPLAELSSRLECIFDKSYVLAAYARAVLPALRPPRILALGGAETPAPGPEGGAEGGDATVPRALGLAVFGDQTLSADDAGRLACCLLGSSWLGNFSLDQALTRQLFVPRHWTLGRQPPTHRYRSVSDTQARDLPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHVLTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGGGQPPGRG 465          
BLAST of EWM29762.1 vs. NCBI_GenBank
Match: gi|489378460|ref|WP_003285170.1| (ATP-dependent protease [Pseudomonas stutzeri] >gi|379066627|gb|EHY79370.1| ATP-dependent protease La [Pseudomonas stutzeri ATCC 14405 = CCUG 16156])

HSP 1 Score: 65.855 bits (159), Expect = 7.379e-9
Identity = 41/108 (37.96%), Postives = 50/108 (46.30%), Query Frame = 0
Query:  351 LPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHVLTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGG 458
            LPLF L +VLFPGC L L+VFE RY  MV QCL+    FG+VH  D                 +G+ PA   H+   +             DW+Q P GL    V GG
Sbjct:    3 LPLFPLNTVLFPGCFLDLQVFEARYLDMVSQCLKAGHGFGVVHILDG--------------KEVGAAPAEFSHIGCEALIR----------DWQQLPNGLLGIRVEGG 86          
BLAST of EWM29762.1 vs. NCBI_GenBank
Match: gi|1097950408|emb|SFJ44059.1| (hypothetical protein SAMN05216194_103510 [Pseudomonas kunmingensis])

HSP 1 Score: 65.855 bits (159), Expect = 7.739e-9
Identity = 43/112 (38.39%), Postives = 51/112 (45.54%), Query Frame = 0
Query:  351 LPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHV----LTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGG 458
            LPLF L +VLFPGC L L++FE RY  MV QCL+    FG+VH  D                 +G+ PA   HV    L R              DW+Q P GL    V GG
Sbjct:    3 LPLFPLDTVLFPGCFLDLQIFEARYLDMVSQCLKAGHGFGVVHILDG--------------KEVGAAPAAFSHVGCEALIR--------------DWQQLPNGLLGIRVEGG 86          
BLAST of EWM29762.1 vs. NCBI_GenBank
Match: gi|953980091|ref|WP_058065017.1| (ATP-dependent protease [Pseudomonas sp. TTU2014-105ASC] >gi|953680604|gb|KRW66658.1| ATP-dependent protease [Pseudomonas sp. TTU2014-105ASC])

HSP 1 Score: 65.4698 bits (158), Expect = 1.040e-8
Identity = 41/108 (37.96%), Postives = 50/108 (46.30%), Query Frame = 0
Query:  351 LPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHVLTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGG 458
            LPLF L +VLFPGC L L+VFE RY  MV QCL+    FG+VH  D                 +G+ PA   H+   +             DW+Q P GL    V GG
Sbjct:    3 LPLFPLDTVLFPGCFLDLQVFEARYLDMVSQCLKAGHGFGVVHILDG--------------KEVGAAPAEFSHIGCEALIR----------DWQQLPSGLLGIRVEGG 86          
BLAST of EWM29762.1 vs. NCBI_GenBank
Match: gi|817651467|ref|WP_046617671.1| (ATP-dependent protease [Pseudomonas stutzeri] >gi|816240340|gb|KKJ98792.1| ATP-dependent protease [Pseudomonas stutzeri] >gi|1088373858|gb|OHC16249.1| ATP-dependent protease [Pseudomonadales bacterium GWC2_63_15])

HSP 1 Score: 65.4698 bits (158), Expect = 1.060e-8
Identity = 42/112 (37.50%), Postives = 51/112 (45.54%), Query Frame = 0
Query:  351 LPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHV----LTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGG 458
            LPLF L +VLFPGC L L++FE RY  MV QCL+    FG+VH  D                 +G+ PA   H+    L R              DW+Q P GL    V GG
Sbjct:    3 LPLFPLDTVLFPGCFLDLQIFEARYLDMVSQCLKAGHGFGVVHILDG--------------KEVGAAPAAFSHIGCEALIR--------------DWQQLPNGLLGIRVEGG 86          
BLAST of EWM29762.1 vs. NCBI_GenBank
Match: gi|751307585|ref|WP_041015888.1| (MULTISPECIES: ATP-dependent protease [Pseudomonas stutzeri group] >gi|703403357|emb|CEG54937.1| ATP-dependent protease La [Pseudomonas xanthomarina] >gi|780824802|gb|KJS28114.1| ATP-dependent protease [Pseudomonas sp. BRH_c35])

HSP 1 Score: 65.4698 bits (158), Expect = 1.090e-8
Identity = 42/112 (37.50%), Postives = 51/112 (45.54%), Query Frame = 0
Query:  351 LPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHV----LTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGG 458
            LPLF L +VLFPGC L L++FE RY  MV QCL+    FG+VH  D                 +G+ PA   H+    L R              DW+Q P GL    V GG
Sbjct:    3 LPLFPLDTVLFPGCFLDLQIFEARYLDMVSQCLKAGHGFGVVHILDG--------------KEVGAAPAAFSHIGCEALIR--------------DWQQLPNGLLGIRVEGG 86          
BLAST of EWM29762.1 vs. NCBI_GenBank
Match: gi|1053081888|gb|OCX98758.1| (ATP-dependent protease [Pseudomonas sp. K35])

HSP 1 Score: 65.0846 bits (157), Expect = 1.177e-8
Identity = 42/112 (37.50%), Postives = 51/112 (45.54%), Query Frame = 0
Query:  351 LPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHV----LTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGG 458
            LPLF L +VLFPGC L L++FE RY  MV QCL+    FG+VH  D                 +G+ PA   H+    L R              DW+Q P GL    V GG
Sbjct:    3 LPLFPLDTVLFPGCFLDLQIFEARYLDMVSQCLKAGHGFGVVHILDG--------------KEVGAAPAAFSHIGCEALIR--------------DWQQLPNGLLGIRVEGG 86          
BLAST of EWM29762.1 vs. NCBI_GenBank
Match: gi|653577318|ref|WP_027590948.1| (MULTISPECIES: ATP-dependent protease [Pseudomonas] >gi|733455583|gb|KHL70861.1| ATP-dependent protease [Pseudomonas flexibilis] >gi|735690814|gb|KHO64422.1| ATP-dependent protease [Pseudomonas flexibilis] >gi|1081491100|emb|SCY06177.1| hypothetical protein SAMN02927929_01416 [Pseudomonas flexibilis] >gi|1131828221|emb|SIP87987.1| hypothetical protein SAMN05421672_101148 [Pseudomonas flexibilis])

HSP 1 Score: 65.0846 bits (157), Expect = 1.247e-8
Identity = 43/108 (39.81%), Postives = 52/108 (48.15%), Query Frame = 0
Query:  351 LPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHVLTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGG 458
            LPLF L +VLFPGC+L L++FEPRY  M+  CL+R E FG+V       TL       PAP    ++   G   L R              DWRQ   GL    V GG
Sbjct:    3 LPLFPLDTVLFPGCNLDLQLFEPRYLDMLSACLKRGEGFGVV-------TLLEGAEVGPAPR---AYSEIGCEALIR--------------DWRQQSNGLLGIRVEGG 86          
BLAST of EWM29762.1 vs. NCBI_GenBank
Match: gi|896400729|ref|WP_049338824.1| (ATP-dependent protease [Pseudomonas stutzeri])

HSP 1 Score: 64.6994 bits (156), Expect = 1.912e-8
Identity = 44/108 (40.74%), Postives = 50/108 (46.30%), Query Frame = 0
Query:  351 LPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHVLTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGG 458
            LPLF L +VLFPGC L L++FE RY  MV QCL+    FG+VH  D      S    APA     S    G   L R              DW+Q P GL    V GG
Sbjct:    3 LPLFPLDTVLFPGCMLDLQIFEARYLDMVSQCLKAGHGFGVVHILD-----GSEVGAAPA-----SFARVGCEALIR--------------DWQQLPNGLLGIRVEGG 86          
BLAST of EWM29762.1 vs. NCBI_GenBank
Match: gi|780913224|gb|KJS80812.1| (ATP-dependent protease [Pseudomonas sp. BICA1-14])

HSP 1 Score: 64.6994 bits (156), Expect = 1.931e-8
Identity = 41/108 (37.96%), Postives = 50/108 (46.30%), Query Frame = 0
Query:  351 LPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASITVRAPAPARLGSHPAPGPHVLTRSPRSVAGGLPDGGGDWRQHPQGLRHAPVSGG 458
            LPLF L +VLFPGC L L++FE RY  MV QCL+    FG+VH  D                 +G+ PA   H+          G      DW+Q P GL    V GG
Sbjct:    3 LPLFPLDTVLFPGCFLDLQIFEARYLDMVSQCLKAGHGFGVVHILDG--------------REVGAAPAAFSHI----------GCEALIRDWQQLPNGLLGIRVEGG 86          
The following BLAST results are available for this feature:
BLAST of EWM29762.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112342|gb|EWM29762.1|0.000e+0100.00atp-dependent protease la [Nannochloropsis gaditan... [more]
gi|489378460|ref|WP_003285170.1|7.379e-937.96ATP-dependent protease [Pseudomonas stutzeri] >gi|... [more]
gi|1097950408|emb|SFJ44059.1|7.739e-938.39hypothetical protein SAMN05216194_103510 [Pseudomo... [more]
gi|953980091|ref|WP_058065017.1|1.040e-837.96ATP-dependent protease [Pseudomonas sp. TTU2014-10... [more]
gi|817651467|ref|WP_046617671.1|1.060e-837.50ATP-dependent protease [Pseudomonas stutzeri] >gi|... [more]
gi|751307585|ref|WP_041015888.1|1.090e-837.50MULTISPECIES: ATP-dependent protease [Pseudomonas ... [more]
gi|1053081888|gb|OCX98758.1|1.177e-837.50ATP-dependent protease [Pseudomonas sp. K35][more]
gi|653577318|ref|WP_027590948.1|1.247e-839.81MULTISPECIES: ATP-dependent protease [Pseudomonas]... [more]
gi|896400729|ref|WP_049338824.1|1.912e-840.74ATP-dependent protease [Pseudomonas stutzeri][more]
gi|780913224|gb|KJS80812.1|1.931e-837.96ATP-dependent protease [Pseudomonas sp. BICA1-14][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna911rna911Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications