rna849, rna849 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna849
Unique Name	rna849
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2307
Alignment location	CM002456.1:565802..568230 +

Link to JBrowse

Properties


Property Name	Value
Product	histone deacetylase 1
Orig transcript id	gnl\|cribi\|Naga_100017g40.299.mrna
Orig protein id	gnl\|cribi\|Naga_100017g40.299
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:565802..568230 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g40	gene813	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna849	rna849-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29801.1	cds849	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:565802..568230+
coding sequence from alignment at CM002456.1:565802..568230+

mRNA sequence

>rna849 ID=rna849|Name=rna849|organism=Nannochloropsis gaditana|type=mRNA|length=2307bp
CAGACAAGCAACCCATCAGTGAAGTATTGTGCTGCGCTCCAAAGGACCGT
GTGTGGCAGGCCCTTGAAGGCCGTAAGGCCGCAAGCGTAACCGTGGAGCC
GCTTTAAAGCATGGTCCAAGCATCCCCCCTCGTGCCCACGGCCCCTGCGC
AGGCAGAAGAGGCGCCAGCGACGAAGGAAGACGTCTCTCTCGGGGAATTG
GATGGCTTGGAGGACGTTTCTGTGGACGGAGAGTGGCACGAAGTGGTCTT
GCTCCCCCGTCATGTGTTACGGGAGTCCCCGAGCCGACGCTTGGGTGTGC
CTGAGGCGGTGGAACGGCGACACCGCATTTTTGGTTGTGAGCTCATCCAA
GAGGCTGGCATCCTTTTGCGGCAGCCTCAGGTGGTGATGGCCACGGCCCA
GACCCTGTTTCATCGTTTCTTCTACCGGCGTGCGCTGACCTCGGAAAGGG
CTCAGGATGTGCCGGAGCCGGGCCCTGGGAAATCGCCACGCGTCTTCCTC
TTCGACGCCTTCACCGTCGCGATGGGCTGCGTCTTCCTCGCTTCTAAGCT
GGAGGAGAAGCCCCGAGCCCCGCGCGACGTCCTCTTCGTCTTCCACCACA
TGTGTCGTCGACGTCGGGGCCTGGGCCCCAGCCTGCTGGAGGTCACCTCT
GTCCGCTACCACGACCTCCGGGAGGCCTTACTCATGATCGAGAAGTATGT
GCTCAAGGAGCTGGGCTTCGGGTTCTACAGCATCATGGACCATCCCCACA
AATTCATTCTTTACTACATCAAGACCCTGGACGGCACGCCGACCCTGGCT
CAGCGCGCATGGAACTACTTGAACGACAGCCTCCGCTTAGACTGCTGCGT
GCGCTTCAGGGCGGAATTGATCGCGTGCACGGCCCTCTACATGGCGAGCA
GGGACCTCGGGGTCAAGCTCCCTGACGACCCGCCATGGTTCGCGCTCTTT
GGGGCCTCCTTAGAGGAGATGAGGCACGTGGGGAACGTGATTCTCTCCCT
GTATCGCGAGAAAGACGAAGAAGGAGAAGAAGCGCCACTGCGATGGCTCG
AACCGTTGCACCCAGGCTCCCTTGTGGCTATGGAGGCGCTCCGCAAGGTG
GAGGGGAAAGAGGGAAAGGAGGGGAAGGGGAAGGGACAGGGAGAGTCCAC
AGATTCGCCCGGTGCGATGGAAGTCGATGGCGCGGAAGAAGGATCCGAGA
AGCATGGCGGGGGTGGGGCATCCAAGGAAGGAGAGAGAGGGGAGGGAGGA
AAGGGCTTCAAGGGAAGGAGGGATGTTGGAGAGGCAGTTGGGGCGCGGGG
AGCCAGGAGTATGGAGGAGAATGGGGACGGAGAGTGCGGAGAGGAGGGGG
GCATATCGAAAGCGACAGACCAGGTCTCAGGCGCTCGACTTTCCCGCTCT
CCCTCAGCTCCATTTTCCCCCCCGTCCTCTTCCTCTCCCCCCCGTCTCCG
CCCGGTATCTGCTGCCGGGGGCAAGAAGCGCTCCGGCCTTTCCTCCCCCC
GTTCCAACCGACCACGAAGACAGTCTTCCAGCCCCGCGAGCAGGAGCCGG
AGTCGGAGTTGGGGCAGGGACGGCCGTGGAAGGTCGGAGGTGCAACGCCA
AGGGCATCGACGAAGCCGCAGTCGAAGCAGGAGCCAGGGGAAGGGGCGTG
GACGGGAGCGGGGTTCCGGTGGGGAAAGAGAATATCGTGGGGGGTCGCGT
CATGACAAGAGGCATAGAAGGCACAGAAGAGATGGAGGCGATAAGGATGG
GTTTCACGCGAGGAGGAATAGGGAGGGAGAGGATTTACGGGCTCGAGATT
GGCGGAATGAGCCTGAAAGTAAGGAAAGGAGAAAGTACGAGGACAAGATT
AGGGAGCGCCGCCGGGACCATTCGAGAGAGAGGTAAAGCGAGTGCTGCGT
CGATCTTGATATATCATAAATTGAGGGAAACAGGGAACAAGTCAAGTTGA
TGACGCGCTTTTTCTGTGGTGTGCCCCTTGGTGATATTTGAGTTGTCTCG
ACTGACTGGAACAGATGCGTGGCACATTCACAGCCTATTTGAAACCTTTT
GAGCACCTCTAACTGAGTAAGTCACACTCGTGTTTGACCGATGCCAGGAT
ATAGCACGTCTATTGCTCTCTATTTTACTTTCTGCTTTGTACGGACGTGT
TGCATACATATTTTTCAAGGCTTCCGGTGATGTTGGGTCGACATAAGTCC
TCCGCCCGCTCGTGAAGAGAAAATGGTATTTGTGCGTTCACCTAGAAGTC
CAGGTAGAAGATAATATCACGCACAACACATGGCCAAATGCTCGAACTTT
ATAAAGC

protein sequence of rna849

>rna849-protein ID=rna849-protein|Name=rna849|organism=Nannochloropsis gaditana|type=polypeptide|length=480bp
MKKRRTTYFGERSTTWMAKDGNVPCSPSSVPHDPPHVRVPTTPGHKSQDM
SSKKRVSYFYHGDVGHYYYGPGHPMKPHRLKLTHHLVLGYGLYRKMEVYR
PHIATTQELQKFHSQEYVNFLSRVNPDMGRTLSSSVHSKFNVGEYTDCPI
FDGMMEFCKIYTGCSIDGAQKLNHKITDVAVNWSGGLHHAKKGEASGFCY
INDIVLAILELLKYHPRVLYIDIDIHHGDGVEEAFYCTDRVMTVSFHRYG
DFFPGTGNIKDVGAKNGKYYSVNVPLEEGIDDASYERVFRPVMAKVMEVY
QPSAVVLQCGADSLSGDRLGCFNLTLRGHAKCVEMMKGYNVPLLILGGGG
YAIRNVARCWAFETSVLLEEEVSDEIPRNDYYDYYAPDYKLHLPPGTTEN
QNSTEGLEAIKVQILQQLSQIPGAPSVQMQEVPPDWATNERGGGEDEEDP
DVRSSNRNRFGGERREHEAEFYDGGKDQDR

mRNA from alignment at CM002456.1:565802..568230+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna849 ID=rna849|Name=rna849|organism=Nannochloropsis gaditana|type=mRNA|length=2429bp|location=Sequence derived from alignment at CM002456.1:565802..568230+ (Nannochloropsis gaditana)
CTGTTCACATCGCCCTCGTTGTCCCGACAACCCCAAAAGAGCATGTATTT
TTAGTCGACAAAAGCCTGAAAAGAGGTGTTCTTGATTTGACATTACatga
aaaagagaaggactACGTATTTTGGGGAAAGGTCAACTACGTGGATGGCC
AAGGACGGCAACGTCCCTTgttctccctcttccgtccctcaCGATCCCCC
CCACGTTCGCGTTCCAACCACGCCAGGACACAAATCGCAGGACATGTCGT
CCAAAAAGCGCGTGTCATATTTCTACCACGGCGACGTGGGTCATTATTAC
TACGGGCCTGGACATCCGATGAAGGTACGTGATGCACCGTGTGCACCCGC
CAAAGGGGGTAGGTAAGAAACGCTACGTTTAAGGAGAATCCTTCGGTGGC
GCGTGCTTATATCTGATTGTGTGGGGAACGAGGTGCCTCTAGATGGACAA
GTGTAGGAATGGAGTCTTTCTTGAGGCCTTTGGCCCCATTGTTTTGCGAA
CTCTCCACTCCTAAACGCGATCGACCCTCCTTGACATGTGGAGGCTTGCT
CAAAATATCCTCACATACTTGAATGCGCTAAGGCGCCCTTCATTTGCGAG
AAATTTTACGCCATCCTCTTTCACGGTGCTTTGTCACTTACTCTGCAATG
CTCACTCCTGATtgtccccccctcgccacaGCCCCATCGGCTCAAGCTCA
CCCACCATCTTGTGCTCGGATATGGACTCTACCGAAAAATGGAGGTCTAC
CGCCCGCACATCGCCACCACccaggagctgcagaagTTCCATTCTCAGGA
GTACGTGAACTTCTTGTCACGTGTCAAcccggacatgggccgtACCCTAA
GCTCGAGCGTGCATAGCAAGTTCAATGTAGGCGAGTACACCGACTGCCCC
ATATTCGACGGCATGATGGAGTTCTGCAAGATATATACCGGCTGCTCGAT
CGATGGGGCTCAAAAGCTGAACCACAAGATCACCGACGTTGCGGTGAATT
GGTCGGGGGGGCTGCACCacgcgaagaaaggggaggcgtcgggCTTCTGC
TACATAAATGTACGTGCTCCACGCCGGACGGACGCGATCCGATTTTTTTA
TTTCAATTTATTCTATTTGTCTTTCGCTCTCATCTTTGTCGGGATCAACA
TGAAATGCCTAATAATCTCGCGGCCCTACCGGCTGGTACACGCCCAAGGT
CAAGGTGCCAGGGTCTTCGCGTCTTCACTCGGTGCctatcgccctcctct
ctcactccctccctccccatcggtcgacgcccctctcccgcctccacaGG
ACATCGTCTTGGCGATCCTGGAGCTCCTCAAGTACCACCCGCGCGTGCTC
TACATCGACATCGACATCCACCACggggacggggtggaggaggccttcTA
CTGCACGGACCGGGTGATGACGGTCTCCTTCCACCGGTACGGCGACTTCT
TCCCCGGCACCGGGAACATCAAAGACGTGGGCGCCAAGAACGGGAAGTAC
TACTCGGTGAACGtgcccctggaggagggcatcgaCGACGCGTCCTACGA
GCGGGTCTTCAGGCCGGTGATGGCCAAGGTCATGGAAGTCTACCAGCCCT
CGGCCGTGGTCTTGCAGTGCGGCGCCGACTCCCTGTCGGGCGACAGGCTT
GGCTGCTTCAATCTGACGCTGCGGGGGCACGCGAAGTGCGTGGAGATGAT
GAAGGGCTACAACGTCCCCCTCCTGATattggggggcgggggctaCGCGA
TCAGGAACGTGGCGCGCTGCTGGGCCTTCGAAACCTCGgtgcttttggag
gaggaggtgagcgACGAGATCCCCCGCAACGACTACTATGACTATTACGC
CCCCGACTATAAGCTGCACCTGCCGCCGGGGACGACGGAGAACCAGAACA
GCACGGAGGGTCTGGAGGCCATCAAGGTCCAGATCTTGCAGCAGCTCTCG
CAGATTCCCGGGGCCCCGTCCGTGCAGATGCAGGAGGTGCCTCCGGACTG
GGCGACgaacgagaggggaggcggagaggacgaggaggacccgGATGTGC
GCTCGTCGAACCGGAATCGGttcgggggggagaggcgggagcaCGAGGCA
GAGTTTTAcgatggggggaaggaccaAGACCGgtagggggaagacggcgt
CAGATTCTTATGGCCCCGGCCGAAGGGGATAGAGGGCTGGACGCTGGCCA
GGGACACCTGGCTCTTGAAGGGGAGTGCTGTTCCCCCGTCTAAGAAAGTC
GAAGAGCGTGCCAAAGCTACCTCTCTGAAATCCAATAAAACCCGAAACGA
AAAGCACAGAACATGTGATGACTTAAATACACAGTGCATTTGCCCTTTGT
CTGCGACCAACCCTTCTCAAGTCTCACGTGTGGACCGAAACACTCGATGA
cctctctccatcgccgGGGCCTCGCTCAC

Coding sequence (CDS) from alignment at CM002456.1:565802..568230+

>rna849 ID=rna849|Name=rna849|organism=Nannochloropsis gaditana|type=CDS|length=4329bp|location=Sequence derived from alignment at CM002456.1:565802..568230+ (Nannochloropsis gaditana)
atgaaaaagagaaggactACGTATTTTGGGGAAAGGTCAACTACGTGGAT
GGCCAAGGACGGCAACGTCCCTTgttctccctcttccgtccctcaCGATC
CCCCCCACGTTCGCGTTCCAACCACGCCAGGACACAAATCGCAGGACATG
TCGTCCAAAAAGCGCGTGTCATATTTCTACCACGGCGACGTGGGTCATTA
TTACTACGGGCCTGGACATCCGATGAAGCCCCATCGGCTCAAGCTCACCC
ACCATCTTGTGCTCGGATATGGACTCTACCGAAAAATGGAGGTCTACCGC
CCGCACATCGCCACCACccaggagctgcagaagTTCCATTCTCAGGAGTA
CGTGAACTTCTTGTCACGTGTCAAcccggacatgggccgtACCCTAAGCT
CGAGCGTGCATAGCAAGTTCAATGTAGGCGAGTACACCGACTGCCCCATA
TTCGACGGCATGATGGAGTTCTGCAAGATATATACCGGCTGCTCGATCGA
TGGGGCTCAAAAGCTGAACCACAAGATCACCGACGTTGCGGTGAATTGGT
CGGGGGGGCTGCACCacgcgaagaaaggggaggcgtcgggCTTCTGCTAC
ATAAATGACATCGTCTTGGCGATCCTGGAGCTCCTCAAGTACCACCCGCG
CGTGCTCTACATCGACATCGACATCCACCACggggacggggtggaggagg
ccttcTACTGCACGGACCGGGTGATGACGGTCTCCTTCCACCGGTACGGC
GACTTCTTCCCCGGCACCGGGAACATCAAAGACGTGGGCGCCAAGAACGG
GAAGTACTACTCGGTGAACGtgcccctggaggagggcatcgaCGACGCGT
CCTACGAGCGGGTCTTCAGGCCGGTGATGGCCAAGGTCATGGAAGTCTAC
CAGCCCTCGGCCGTGGTCTTGCAGTGCGGCGCCGACTCCCTGTCGGGCGA
CAGGCTTGGCTGCTTCAATCTGACGCTGCGGGGGCACGCGAAGTGCGTGG
AGATGATGAAGGGCTACAACGTCCCCCTCCTGATattggggggcgggggc
taCGCGATCAGGAACGTGGCGCGCTGCTGGGCCTTCGAAACCTCGgtgct
tttggaggaggaggtgagcgACGAGATCCCCCGCAACGACTACTATGACT
ATTACGCCCCCGACTATAAGCTGCACCTGCCGCCGGGGACGACGGAGAAC
CAGAACAGCACGGAGGGTCTGGAGGCCATCAAGGTCCAGATCTTGCAGCA
GCTCTCGCAGATTCCCGGGGCCCCGTCCGTGCAGATGCAGGAGGTGCCTC
CGGACTGGGCGACgaacgagaggggaggcggagaggacgaggaggacccg
GATGTGCGCTCGTCGAACCGGAATCGGttcgggggggagaggcgggagca
CGAGGCAGAGTTTTAcgatggggggaaggaccaAGACCGgtagatgaaaa
agagaaggactACGTATTTTGGGGAAAGGTCAACTACGTGGATGGCCAAG
GACGGCAACGTCCCTTgttctccctcttccgtccctcaCGATCCCCCCCA
CGTTCGCGTTCCAACCACGCCAGGACACAAATCGCAGGACATGTCGTCCA
AAAAGCGCGTGTCATATTTCTACCACGGCGACGTGGGTCATTATTACTAC
GGGCCTGGACATCCGATGAAGCCCCATCGGCTCAAGCTCACCCACCATCT
TGTGCTCGGATATGGACTCTACCGAAAAATGGAGGTCTACCGCCCGCACA
TCGCCACCACccaggagctgcagaagTTCCATTCTCAGGAGTACGTGAAC
TTCTTGTCACGTGTCAAcccggacatgggccgtACCCTAAGCTCGAGCGT
GCATAGCAAGTTCAATGTAGGCGAGTACACCGACTGCCCCATATTCGACG
GCATGATGGAGTTCTGCAAGATATATACCGGCTGCTCGATCGATGGGGCT
CAAAAGCTGAACCACAAGATCACCGACGTTGCGGTGAATTGGTCGGGGGG
GCTGCACCacgcgaagaaaggggaggcgtcgggCTTCTGCTACATAAATG
ACATCGTCTTGGCGATCCTGGAGCTCCTCAAGTACCACCCGCGCGTGCTC
TACATCGACATCGACATCCACCACggggacggggtggaggaggccttcTA
CTGCACGGACCGGGTGATGACGGTCTCCTTCCACCGGTACGGCGACTTCT
TCCCCGGCACCGGGAACATCAAAGACGTGGGCGCCAAGAACGGGAAGTAC
TACTCGGTGAACGtgcccctggaggagggcatcgaCGACGCGTCCTACGA
GCGGGTCTTCAGGCCGGTGATGGCCAAGGTCATGGAAGTCTACCAGCCCT
CGGCCGTGGTCTTGCAGTGCGGCGCCGACTCCCTGTCGGGCGACAGGCTT
GGCTGCTTCAATCTGACGCTGCGGGGGCACGCGAAGTGCGTGGAGATGAT
GAAGGGCTACAACGTCCCCCTCCTGATattggggggcgggggctaCGCGA
TCAGGAACGTGGCGCGCTGCTGGGCCTTCGAAACCTCGgtgcttttggag
gaggaggtgagcgACGAGATCCCCCGCAACGACTACTATGACTATTACGC
CCCCGACTATAAGCTGCACCTGCCGCCGGGGACGACGGAGAACCAGAACA
GCACGGAGGGTCTGGAGGCCATCAAGGTCCAGATCTTGCAGCAGCTCTCG
CAGATTCCCGGGGCCCCGTCCGTGCAGATGCAGGAGGTGCCTCCGGACTG
GGCGACgaacgagaggggaggcggagaggacgaggaggacccgGATGTGC
GCTCGTCGAACCGGAATCGGttcgggggggagaggcgggagcaCGAGGCA
GAGTTTTAcgatggggggaaggaccaAGACCGgtagatgaaaaagagaag
gactACGTATTTTGGGGAAAGGTCAACTACGTGGATGGCCAAGGACGGCA
ACGTCCCTTgttctccctcttccgtccctcaCGATCCCCCCCACGTTCGC
GTTCCAACCACGCCAGGACACAAATCGCAGGACATGTCGTCCAAAAAGCG
CGTGTCATATTTCTACCACGGCGACGTGGGTCATTATTACTACGGGCCTG
GACATCCGATGAAGCCCCATCGGCTCAAGCTCACCCACCATCTTGTGCTC
GGATATGGACTCTACCGAAAAATGGAGGTCTACCGCCCGCACATCGCCAC
CACccaggagctgcagaagTTCCATTCTCAGGAGTACGTGAACTTCTTGT
CACGTGTCAAcccggacatgggccgtACCCTAAGCTCGAGCGTGCATAGC
AAGTTCAATGTAGGCGAGTACACCGACTGCCCCATATTCGACGGCATGAT
GGAGTTCTGCAAGATATATACCGGCTGCTCGATCGATGGGGCTCAAAAGC
TGAACCACAAGATCACCGACGTTGCGGTGAATTGGTCGGGGGGGCTGCAC
CacgcgaagaaaggggaggcgtcgggCTTCTGCTACATAAATGACATCGT
CTTGGCGATCCTGGAGCTCCTCAAGTACCACCCGCGCGTGCTCTACATCG
ACATCGACATCCACCACggggacggggtggaggaggccttcTACTGCACG
GACCGGGTGATGACGGTCTCCTTCCACCGGTACGGCGACTTCTTCCCCGG
CACCGGGAACATCAAAGACGTGGGCGCCAAGAACGGGAAGTACTACTCGG
TGAACGtgcccctggaggagggcatcgaCGACGCGTCCTACGAGCGGGTC
TTCAGGCCGGTGATGGCCAAGGTCATGGAAGTCTACCAGCCCTCGGCCGT
GGTCTTGCAGTGCGGCGCCGACTCCCTGTCGGGCGACAGGCTTGGCTGCT
TCAATCTGACGCTGCGGGGGCACGCGAAGTGCGTGGAGATGATGAAGGGC
TACAACGTCCCCCTCCTGATattggggggcgggggctaCGCGATCAGGAA
CGTGGCGCGCTGCTGGGCCTTCGAAACCTCGgtgcttttggaggaggagg
tgagcgACGAGATCCCCCGCAACGACTACTATGACTATTACGCCCCCGAC
TATAAGCTGCACCTGCCGCCGGGGACGACGGAGAACCAGAACAGCACGGA
GGGTCTGGAGGCCATCAAGGTCCAGATCTTGCAGCAGCTCTCGCAGATTC
CCGGGGCCCCGTCCGTGCAGATGCAGGAGGTGCCTCCGGACTGGGCGACg
aacgagaggggaggcggagaggacgaggaggacccgGATGTGCGCTCGTC
GAACCGGAATCGGttcgggggggagaggcgggagcaCGAGGCAGAGTTTT
AcgatggggggaaggaccaAGACCGgtag

Synonyms

Publications