rna832, rna832 (mRNA) Nannochloropsis gaditana

Overview
Namerna832
Unique Namerna832
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length531
Alignment locationCM002456.1:523808..524966 -

Link to JBrowse

Properties
Property NameValue
Productprotein-s-isoprenylcysteine o-methyltransferase
Orig transcript idgnl|cribi|Naga_100017g23.319.mrna
Orig protein idgnl|cribi|Naga_100017g23.319
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:523808..524966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100017g23gene796Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna832rna832-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29821.1cds832Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna832 ID=rna832|Name=rna832|organism=Nannochloropsis gaditana|type=mRNA|length=531bp
ATGCTGAGTGGGGATGTAGTTGATGTAGGAAAAGCAGAGAAAACAGCACT
GAGCCTTACGAAGCAAAGCAAAATGACAGGGCCCCTGCGAGCCGCACCGA
TGCCTGTCCGAGGGAGGAAACGGTACCGATTTCATGCTTCAGTGACCTTC
GGGTTCCTCGGCTTCTGCTGCCTTGTGCAACGTGCCCAGTCATCTATGGG
TCAGGAAGAAGCTCGTCTATATGACCGAAATCTGCAGCACTTTTCACCGG
AGGGCCGTATCTATCAGGTGCAATATGCAGAACTTGCTGCTCGGCGTGGG
AACCCAGTGGTGGCCGTGAGCAATAATCAGGACGCCCTAGCCTTGTGTGT
GGAGCGACGGCGGGCCTCCGCCTTGGAGGAACCCGGTATTGCCTGGGAAA
AAGTGGGCGAAATTCAACAAGCTGCCTGGCGTGAAGGACATTGCGTATTT
CATCGGAGATTTACAGCACCGGAACACTTTTGTACGCGCTCAACGGCCTT
ACGGCGTGTCCTGCGTGGTTGGGGGTGTTGA
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protein sequence of rna832

>rna832-protein ID=rna832-protein|Name=rna832|organism=Nannochloropsis gaditana|type=polypeptide|length=253bp
MLSIDRLQKCLDFNFPAAAANPAFHTNRGVGRIGLAGFLLGGLWGAHLVL
FFAALLGNDNKLWLVRWSAYMVSLFCFHFMEFLSTALYKPESVTYDSYMI
NHSKEYTVAALAAWAEFWLELWFFPDLKISGSFTCLLGLLFLVGGQACRI
VAMHTARGHFSHTIMETRQKDHQLVTHGIYRFLRHPSYCGWFWWVVGTQI
LLCNPLCALIYALVSWRFFAARIKYEEGTLKTFYPQEYPSYCRQTVVGIP
FIS
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mRNA from alignment at CM002456.1:523808..524966-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna832 ID=rna832|Name=rna832|organism=Nannochloropsis gaditana|type=mRNA|length=1159bp|location=Sequence derived from alignment at CM002456.1:523808..524966- (Nannochloropsis gaditana)
ATGTATGCAAGCGCGAGCAGCTAATTCGACACGTTACACATATGACTCAT
ATTCTAAAGGTTCCGGATGTTGTCCATCGACCGACTGCAAAAATGCTTGG
ATTTTAATTTTCCCGCTGCAGCCGCCAATCCTGCTTTCCATACCAATAGG
GGTGTGGGTCGCATAGGCCTGGCTGGATTTCTTCTCGGAGGGCTTTGGGG
AGCGCATTTGGTCCTCTTCTTTGCTGCTTTACTCGGCAATGACAACAAGC
TATGGCTGGTGCGGTGGAGCGCATACATGGTCTCCCTGTTTTGCTTCCAT
TTCATGGAGTTTTTGAGTACAGCACTTTACAAACCTGAGTCTGTTACATA
TGATTGTGAGTATTATAAGATTTTGCGTCACCATGCATGCTGAACAAGAC
ATTCTTGATTTTTGGCATCCTTTAGATACCTTAAAACCGAAAATGCGTTG
TGGCCTCCGTGCTTTGTCATTCGTGCTTAAGGTATAACTTATCAGTCCCA
ACATCCTTACACTCGACAGCCTACATGATAAATCACTCCAAGGAATATAC
TGTTGCAGCATTGGCCGCATGGGCCGAATTCTGGCTGGAGCTTTGGTTTT
TCCCGGACCTCAAGATTTCTGGCTCTTTTACCTGCCTTCTTGGTCTGCTC
TTTCTTGTTGGAGGACAAGCCTGTCGGATCGTTGCCATGCACACGGCCCG
GGGTCACTTTTCGCACACAATCATGGAAACGCGACAAAAGGACCATCAAC
TTGTGACGCATGGCATTTATCGCTTTCTCCGACATCCTTCCTATTGTGGA
TGGTTCTGGTGGGTGGTCGGCACTCAAATTCTTCTGTGCAACCCTCTTTG
CGCACTTATTTATGCTTTGGTGAGCTGGCGCTTCTTCGCAGCAAGAATAA
AGTACGAAGAGGGGACTTTGAAAACTTTTTACCCTCAAGAGTATCCAAGC
TACTGTCGGCAGACGGTGGTAGGGATCCCCTTCATTTCATGATGGGCATG
CTGAATAAGAGATGAGAAGCGCAAAGCGGGAGCGCCAAAAAAGCCATGCG
GCGATGCACCAGCGCGATATCAACATCTGTCATGTTTTGTGGGATGCTTC
ATACGACGTTCAGAGAAAGGATCAATCGGGAAAAGACCGCCCACTCAGCA
CCTTGCCTT
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Coding sequence (CDS) from alignment at CM002456.1:523808..524966-

>rna832 ID=rna832|Name=rna832|organism=Nannochloropsis gaditana|type=CDS|length=1524bp|location=Sequence derived from alignment at CM002456.1:523808..524966- (Nannochloropsis gaditana)
CCTACATGATAAATCACTCCAAGGAATATACTGTTGCAGCATTGGCCGCA
TGGGCCGAATTCTGGCTGGAGCTTTGGTTTTTCCCGGACCTCAAGATTTC
TGGCTCTTTTACCTGCCTTCTTGGTCTGCTCTTTCTTGTTGGAGGACAAG
CCTGTCGGATCGTTGCCATGCACACGGCCCGGGGTCACTTTTCGCACACA
ATCATGGAAACGCGACAAAAGGACCATCAACTTGTGACGCATGGCATTTA
TCGCTTTCTCCGACATCCTTCCTATTGTGGATGGTTCTGGTGGGTGGTCG
GCACTCAAATTCTTCTGTGCAACCCTCTTTGCGCACTTATTTATGCTTTG
GTGAGCTGGCGCTTCTTCGCAGCAAGAATAAAGTACGAAGAGGGGACTTT
GAAAACTTTTTACCCTCAAGAGTATCCAAGCTACTGTCGGCAGACGGTGG
TAGGGATCCCCTTCATTTCATGAATGTTGTCCATCGACCGACTGCAAAAA
TGCTTGGATTTTAATTTTCCCGCTGCAGCCGCCAATCCTGCTTTCCATAC
CAATAGGGGTGTGGGTCGCATAGGCCTGGCTGGATTTCTTCTCGGAGGGC
TTTGGGGAGCGCATTTGGTCCTCTTCTTTGCTGCTTTACTCGGCAATGAC
AACAAGCTATGGCTGGTGCGGTGGAGCGCATACATGGTCTCCCTGTTTTG
CTTCCATTTCATGGAGTTTTTGAGTACAGCACTTTACAAACCTGAGTCTG
TTACATATGATTCCTACATGATAAATCACTCCAAGGAATATACTGTTGCA
GCATTGGCCGCATGGGCCGAATTCTGGCTGGAGCTTTGGTTTTTCCCGGA
CCTCAAGATTTCTGGCTCTTTTACCTGCCTTCTTGGTCTGCTCTTTCTTG
TTGGAGGACAAGCCTGTCGGATCGTTGCCATGCACACGGCCCGGGGTCAC
TTTTCGCACACAATCATGGAAACGCGACAAAAGGACCATCAACTTGTGAC
GCATGGCATTTATCGCTTTCTCCGACATCCTTCCTATTGTGGATGGTTCT
GGTGGGTGGTCGGCACTCAAATTCTTCTGTGCAACCCTCTTTGCGCACTT
ATTTATGCTTTGGTGAGCTGGCGCTTCTTCGCAGCAAGAATAAAGTACGA
AGAGGGGACTTTGAAAACTTTTTACCCTCAAGAGTATCCAAGCTACTGTC
GGCAGACGGTGGTAGGGATCCCCTTCATTTCATGAATGTTGTCCATCGAC
CGACTGCAAAAATGCTTGGATTTTAATTTTCCCGCTGCAGCCGCCAATCC
TGCTTTCCATACCAATAGGGGTGTGGGTCGCATAGGCCTGGCTGGATTTC
TTCTCGGAGGGCTTTGGGGAGCGCATTTGGTCCTCTTCTTTGCTGCTTTA
CTCGGCAATGACAACAAGCTATGGCTGGTGCGGTGGAGCGCATACATGGT
CTCCCTGTTTTGCTTCCATTTCATGGAGTTTTTGAGTACAGCACTTTACA
AACCTGAGTCTGTTACATATGATT
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Synonyms
Publications