EWM29871.1, cds792 (CDS) Nannochloropsis gaditana

Overview
NameEWM29871.1
Unique Namecds792
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:430039..430701 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29871.1
Productphosphatidylinositol-glycan biosynthesis class f
Orig transcript idgnl|cribi|Naga_100106g4.1445.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:430039..430701 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0006464cellular protein modification process
GO:0006629lipid metabolic process
GO:0006506GPI anchor biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005789endoplasmic reticulum membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR009580GPI_biosynthesis_protein_Pig-F
Homology
BLAST of EWM29871.1 vs. NCBI_GenBank
Match: gi|585112453|gb|EWM29871.1| (phosphatidylinositol-glycan biosynthesis class f [Nannochloropsis gaditana])

HSP 1 Score: 436.802 bits (1122), Expect = 9.674e-155
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0
Query:    1 MQHDWSVVVLLEALLALLVLTIPALWEGRDAAMIEVNDSTRLPLPTRLWRLAGIMALASYTSTIVTHATGFLEIGPNEAREQSLRFVGGVLIAAPYFFLSAVALGAPWKEMVDRTAAWALIMGILVGGPLGAAAPSLQQLRLPPLWQGPPGETALIRFRALGCCAGAWVGAFVVPLDWAMPFQEWPLPLVVGAVAGHSLGSFAVYCDQRWTHAKGVGHVD 220
            MQHDWSVVVLLEALLALLVLTIPALWEGRDAAMIEVNDSTRLPLPTRLWRLAGIMALASYTSTIVTHATGFLEIGPNEAREQSLRFVGGVLIAAPYFFLSAVALGAPWKEMVDRTAAWALIMGILVGGPLGAAAPSLQQLRLPPLWQGPPGETALIRFRALGCCAGAWVGAFVVPLDWAMPFQEWPLPLVVGAVAGHSLGSFAVYCDQRWTHAKGVGHVD
Sbjct:    1 MQHDWSVVVLLEALLALLVLTIPALWEGRDAAMIEVNDSTRLPLPTRLWRLAGIMALASYTSTIVTHATGFLEIGPNEAREQSLRFVGGVLIAAPYFFLSAVALGAPWKEMVDRTAAWALIMGILVGGPLGAAAPSLQQLRLPPLWQGPPGETALIRFRALGCCAGAWVGAFVVPLDWAMPFQEWPLPLVVGAVAGHSLGSFAVYCDQRWTHAKGVGHVD 220          
BLAST of EWM29871.1 vs. NCBI_GenBank
Match: gi|1126216685|ref|XP_019642364.1| (PREDICTED: phosphatidylinositol-glycan biosynthesis class F protein-like [Branchiostoma belcheri])

HSP 1 Score: 70.4774 bits (171), Expect = 2.791e-11
Identity = 42/119 (35.29%), Postives = 63/119 (52.94%), Query Frame = 0
Query:   86 FVGGVL---IAAPYFFLSAVALGAPWKEMVDRTAAWALIMGILVGGPLGAAAPSLQQLRLPPLWQGPPGET-ALIRFRALGCCAGAWVGAFVVPLDWAMPFQEWPLPLVVGAVAGHSLG 200
            FV G L   ++   F + AV  GAP +E  + T +WAL+M  L   P      S  +  +  +   P  E  + ++   L    GAW+GAF +PLDW  P+Q WP+P  +GA+ GH++G
Sbjct:   80 FVKGFLFFLLSILSFHIIAVLYGAPLQEDTEETFSWALLMATLTALPCWCMLGSRLETWVAVVLNRPESENESFLQTTVLCTVVGAWLGAFPIPLDWDRPWQVWPIPCSIGALLGHTVG 198          
BLAST of EWM29871.1 vs. NCBI_GenBank
Match: gi|260803794|ref|XP_002596774.1| (hypothetical protein BRAFLDRAFT_211692 [Branchiostoma floridae] >gi|229282034|gb|EEN52786.1| hypothetical protein BRAFLDRAFT_211692, partial [Branchiostoma floridae])

HSP 1 Score: 67.3958 bits (163), Expect = 9.272e-11
Identity = 43/123 (34.96%), Postives = 63/123 (51.22%), Query Frame = 0
Query:   82 QSLRFVGGVL---IAAPYFFLSAVALGAPWKEMVDRTAAWALIMGILVGGPLGAAAPSLQQLRLPPLWQGPPGET-ALIRFRALGCCAGAWVGAFVVPLDWAMPFQEWPLPLVVGAVAGHSLG 200
            Q   FV G L   ++   F + AV  GAP +E  + T +WAL+M  L   P      S  +  +  +   P  E  + ++   L    GAW+GAF +PLDW  P+Q WP+P  +GA+ GH+ G
Sbjct:    1 QISSFVKGFLFFLLSILSFHVIAVLYGAPLQEDTEETFSWALLMATLTALPCWCMLGSRLETWVAVVLNRPESEIESFLQTTVLCTVVGAWLGAFPIPLDWDRPWQVWPIPCSIGALLGHTGG 123          
BLAST of EWM29871.1 vs. NCBI_GenBank
Match: gi|669152774|ref|XP_008611949.1| (hypothetical protein SDRG_07870 [Saprolegnia diclina VS20] >gi|530736301|gb|EQC34543.1| hypothetical protein SDRG_07870 [Saprolegnia diclina VS20])

HSP 1 Score: 68.1662 bits (165), Expect = 1.994e-10
Identity = 46/134 (34.33%), Postives = 66/134 (49.25%), Query Frame = 0
Query:   76 PNEAREQSLRFVGG----VLIAAPYFFLSAVALGAPWKEMVDRTAAWALIMGILVGGPLGAAA-----PSLQQLRLPPLWQGPPGETALIRFRALGCCAGAWVGAFVVPLDWAMPFQEWPLPLVVGAVAGHSLG 200
            P  + + SLR  G      + A   F +  +  GAP  +++DRT   A ++  L   PL  A       S  +  L   W+    + A   F  LG   GA++GA ++PLDW  P+Q+WPLP V G V GH+LG
Sbjct:   61 PLLSPQASLRRAGASVAITIAAIALFHVVLIFFGAPVLDLIDRTLMLATLLAFLCVLPLTTAVGLASFDSYVETVLHQRWRSHDEQQATCTF--LGTLFGAYIGALLLPLDWDRPWQQWPLPCVYGGVYGHTLG 192          
BLAST of EWM29871.1 vs. NCBI_GenBank
Match: gi|546679507|gb|ERL89966.1| (hypothetical protein D910_07325 [Dendroctonus ponderosae])

HSP 1 Score: 65.855 bits (159), Expect = 1.591e-9
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 0
Query:   97 FFLSAVALGAPWKEMVDRTAAWALIMGILVGGPLGAAAPSLQQLRLPPLWQGPPGETALIRFRALG--CCAGAWVGAFVVPLDWAMPFQEWPLPLVVGAVAGHSLG 200
            F++ AV  GAP+         +A+ M +LV  P      + + + +      P G   L  F  +    C GAW+GA VVPLDW  P+Q WP+P ++GA+AG+  G
Sbjct:   93 FYIVAVLFGAPFLSKQHENLTFAITMTVLVVLPCCLYMGTDKSVVVLLSLISPAGNDQLKPFFRISQFTCLGAWLGAIVVPLDWNKPYQVWPIPAILGALAGYFFG 198          
BLAST of EWM29871.1 vs. NCBI_GenBank
Match: gi|720071862|ref|XP_010278188.1| (PREDICTED: uncharacterized protein C1450.15-like isoform X1 [Nelumbo nucifera])

HSP 1 Score: 64.3142 bits (155), Expect = 6.631e-9
Identity = 44/128 (34.38%), Postives = 67/128 (52.34%), Query Frame = 0
Query:   99 LSAVALGAPWKEM-VDRTAAWALIMGILVGGP----LGAAAPSLQQLRLPPLWQGPPG-ETALIRFRALGCCAGAWVGAFVVPLDWAMPFQEWPLPLVVGAVAGHSLG-----SFAVYCDQRWTHAKG 215
              A+ LGAP   + + RT  W+L+M +    P     G++  + Q+L     +  P G    +I   A G   GAW+GA+ +PLDW  P+QEWP+ +  GA+AG+ +G      F +  D+R  H KG
Sbjct:  104 FGAIVLGAPIGILYIKRTVNWSLLMSLFTFAPAASVFGSSWNNWQRLFA---YAKPAGIVDYMICLPAHGTVIGAWLGAWPIPLDWERPWQEWPISVSYGAIAGYIIGMVASLGFILVFDRRQKHVKG 228          
BLAST of EWM29871.1 vs. NCBI_GenBank
Match: gi|813112559|ref|XP_012195278.1| (hypothetical protein SPRG_19082 [Saprolegnia parasitica CBS 223.65] >gi|641540470|gb|KDO34252.1| hypothetical protein SPRG_19082 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 63.5438 bits (153), Expect = 7.578e-9
Identity = 40/109 (36.70%), Postives = 56/109 (51.38%), Query Frame = 0
Query:   97 FFLSAVALGAPWKEMVDRTAAWALIMGILVGGPLGAAA-----PSLQQLRLPPLWQGPPGETALIRFRALGCCAGAWVGAFVVPLDWAMPFQEWPLPLVVGAVAGHSLG 200
            F +  +  GAP  ++VDRT   A ++  L   PL  A       +  +  L   W+      A   F  LG   GA++GA ++PLDW  P+Q+WPLP V GAV GH +G
Sbjct:   86 FHVLLIFFGAPVLDLVDRTLMLATLLAFLCVLPLTTAVGLVSFDAYVETVLHQRWRSHDERQATCTF--LGTLFGAYIGALLLPLDWDRPWQQWPLPCVYGAVYGHLVG 192          
BLAST of EWM29871.1 vs. NCBI_GenBank
Match: gi|720030431|ref|XP_010265511.1| (PREDICTED: uncharacterized protein C1450.15-like [Nelumbo nucifera])

HSP 1 Score: 63.929 bits (154), Expect = 9.036e-9
Identity = 44/128 (34.38%), Postives = 68/128 (53.12%), Query Frame = 0
Query:   99 LSAVALGAPWKEM-VDRTAAWALIMGILVGGP----LGAAAPSLQQLRLPPLWQGPPG-ETALIRFRALGCCAGAWVGAFVVPLDWAMPFQEWPLPLVVGAVAGHSLG-----SFAVYCDQRWTHAKG 215
              A+ LGAP   + + RT +W+L+M +    P     G++  + Q+L +   +  P G    +I   A G   GAW+GA+ +PLDW  P+QEWP+ +  GA+AG+ +G      F    D+R  H KG
Sbjct:  104 FGAIVLGAPIGFLYIKRTISWSLLMSLFTFAPAASVFGSSWNNWQRLFV---YAKPAGIVDYMICLPAHGTVIGAWLGAWPMPLDWERPWQEWPISVSYGAIAGYIIGMVASLGFIFMFDRRRPHVKG 228          
BLAST of EWM29871.1 vs. NCBI_GenBank
Match: gi|661898280|emb|CDO98247.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 63.1586 bits (152), Expect = 1.288e-8
Identity = 44/126 (34.92%), Postives = 67/126 (53.17%), Query Frame = 0
Query:   99 LSAVALGAPWKEMVDRTAAWALIMGILVGGP----LGAAAPSLQQLRLPPLWQGPPGETALIRFRALGCCAGAWVGAFVVPLDWAMPFQEWPLPLVVGAVAGHSLG-----SFAVYCDQRWTHAKG 215
            L A+ALGAP  +  +RT  W+L+M +L   P     G++     Q+       GP     +I   A G   GAW GA+ +PLDW  P+Q+WP+ +  GA+AG+ +G      F ++ ++R  H KG
Sbjct:  104 LGAIALGAPMIQNFNRTLHWSLLMSMLTCVPAASVFGSSWADWHQIFAHTKPSGP--IEYMICLPAHGAVIGAWFGAWPMPLDWERPWQDWPVCVSYGALAGYFVGMAAAFGFVLFLNKR-RHVKG 226          
BLAST of EWM29871.1 vs. NCBI_GenBank
Match: gi|747054209|ref|XP_011073301.1| (phosphatidylinositol-glycan biosynthesis class F protein [Sesamum indicum] >gi|1173783651|ref|XP_020547864.1| phosphatidylinositol-glycan biosynthesis class F protein [Sesamum indicum] >gi|1173783653|ref|XP_020547865.1| phosphatidylinositol-glycan biosynthesis class F protein [Sesamum indicum] >gi|1173783655|ref|XP_020547866.1| phosphatidylinositol-glycan biosynthesis class F protein [Sesamum indicum] >gi|1173783657|ref|XP_020547867.1| phosphatidylinositol-glycan biosynthesis class F protein [Sesamum indicum] >gi|1173783659|ref|XP_011073296.2| phosphatidylinositol-glycan biosynthesis class F protein [Sesamum indicum] >gi|1173783661|ref|XP_011073295.2| phosphatidylinositol-glycan biosynthesis class F protein [Sesamum indicum])

HSP 1 Score: 63.5438 bits (153), Expect = 1.299e-8
Identity = 47/125 (37.60%), Postives = 63/125 (50.40%), Query Frame = 0
Query:   99 LSAVALGAPWK-EMVDRTAAWALIMGILVGGPLGAA-APSLQQLRLPPLWQGPPGETA-LIRFRALGCCAGAWVGAFVVPLDWAMPFQEWPLPLVVGAVAGHSLG-----SFAVYCDQRWTHAKG 215
            L A+ LGAP   +   +T  W+L+M +    P  +    S            P G T  +I F A G   GAW GA+ +PLDW  P+QEWP+ +  GA+ G+ LG      F VY +QR  HAKG
Sbjct:  134 LGAIVLGAPVGIQHFTKTIHWSLLMSVFTFVPAASVFGSSWTDWHRIFAQTKPIGSTDFMICFPAHGAVIGAWFGAWPMPLDWERPWQEWPICVTYGAIFGYLLGLVVSFGFVVYNNQR-KHAKG 257          
The following BLAST results are available for this feature:
BLAST of EWM29871.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112453|gb|EWM29871.1|9.674e-155100.00phosphatidylinositol-glycan biosynthesis class f [... [more]
gi|1126216685|ref|XP_019642364.1|2.791e-1135.29PREDICTED: phosphatidylinositol-glycan biosynthesi... [more]
gi|260803794|ref|XP_002596774.1|9.272e-1134.96hypothetical protein BRAFLDRAFT_211692 [Branchiost... [more]
gi|669152774|ref|XP_008611949.1|1.994e-1034.33hypothetical protein SDRG_07870 [Saprolegnia dicli... [more]
gi|546679507|gb|ERL89966.1|1.591e-934.91hypothetical protein D910_07325 [Dendroctonus pond... [more]
gi|720071862|ref|XP_010278188.1|6.631e-934.38PREDICTED: uncharacterized protein C1450.15-like i... [more]
gi|813112559|ref|XP_012195278.1|7.578e-936.70hypothetical protein SPRG_19082 [Saprolegnia paras... [more]
gi|720030431|ref|XP_010265511.1|9.036e-934.38PREDICTED: uncharacterized protein C1450.15-like [... [more]
gi|661898280|emb|CDO98247.1|1.288e-834.92unnamed protein product [Coffea canephora][more]
gi|747054209|ref|XP_011073301.1|1.299e-837.60phosphatidylinositol-glycan biosynthesis class F p... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna792rna792Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications