rna792, rna792 (mRNA) Nannochloropsis gaditana

Overview
Namerna792
Unique Namerna792
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1188
Alignment locationCM002456.1:430039..430701 -

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Properties
Property NameValue
Productphosphatidylinositol-glycan biosynthesis class f
Orig transcript idgnl|cribi|Naga_100106g4.1445.mrna
Orig protein idgnl|cribi|Naga_100106g4.1445
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:430039..430701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100106g4gene758Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29871.1cds792Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna792rna792-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna792 ID=rna792|Name=rna792|organism=Nannochloropsis gaditana|type=mRNA|length=1188bp
ATGTGGTGTTTAATATCCTGCTCTACCCGTACAGGCGGCCCCCCGCCCAC
CTCTTCACCATCCCAGCATTCACATCCACACCGCCAAACACACCCCTTTC
AGGCTGTAGATGCCATGATTCGGTCAAGGATATCTGCACGACGAAAGATC
AATCATTCCCTCCTTTGCGTCGCCGGATGTCTCTTCCTCGATTGTAATGT
CGTCACGAAGGGTATTCCCGTAGCTGCACTCCTCCTCTCGCCAGTTCCTG
TCATCGCCAATATTTACCCCGCTTTCACACATGCTTCGCCGTCACTACAG
CGGCAAGCGAGGAGGCCCCAAGCGAAGCATTTTTGCCCGCTTCTCTCCGC
ACACCTACGTCCCGAACGCACTATGGGCAAGCGCGGAAGCCGTGGAAACG
AACAGGCCGAGGGCAAGCAGAAGGTCGCGTCGGGCGAGGAAGTCTCCCGG
CTCAGTCGCCGGGAAAGTTTCCTCCCGGCCCTTATTGCCCTCGGGAGCGG
CGCCCTTCTCCTAAACAAGTCCTTGAACGAGGAGCGGGCCTACGAGGGAT
TGCACCAGGAGCTTTTTGCTCTCTTGTCGGCAAGCGCGTCCGGTGCGGGA
GAGGCGGGGAGGGATGTCCGGGCGCCGAAGGTGCTCGAGATCGGGGTGGG
ACAGGGGGTGAATGTGAAGTACTATCCCTCCGGCTGCGAAGTGGTGGGCC
TGGACCCAAACCTTAATCAAGATGCAATGAGCGTCGCACAGTCCAAAGCC
AAAGCGCGCAACATCCAGTGGAGCGCCTTGGAGGGAAGGGCGGAATCGCT
CCCGTTTCCGGACGCTAGCTTCGACGCGGTCGTCTCCACCTTGGTGTTCT
GTTCGGTGCAAGACCAGGCTCGGGCTTTGACGGAAGTCGCGCGTGTTTTG
CGGCCGGGGGGGAAGTTCCTGTTCGTCGAGCACATATGGGCGGGAGAGAA
GGAGCACCCCGTGCTCCACCGGGTACAAGGGATCATGGACCCGCTCCAGG
CCTTCCTGGTCAACGGCTGCCACCTCGTCCGGCACACGGACGATCTGCTT
CTAGGAGAGACCAAGGGAGGGGGTGGAAGGGACAGGGAAGGGGTCAAGTT
GTTCGATCGGGTGGAGCGTTTGAACTACTTAGAGATGGACACTCAATGGC
CTGTCAGCGTGCAAGTGGCGGGGGTGCTGGTCAAGTGA
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protein sequence of rna792

>rna792-protein ID=rna792-protein|Name=rna792|organism=Nannochloropsis gaditana|type=polypeptide|length=220bp
MQHDWSVVVLLEALLALLVLTIPALWEGRDAAMIEVNDSTRLPLPTRLWR
LAGIMALASYTSTIVTHATGFLEIGPNEAREQSLRFVGGVLIAAPYFFLS
AVALGAPWKEMVDRTAAWALIMGILVGGPLGAAAPSLQQLRLPPLWQGPP
GETALIRFRALGCCAGAWVGAFVVPLDWAMPFQEWPLPLVVGAVAGHSLG
SFAVYCDQRWTHAKGVGHVD
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mRNA from alignment at CM002456.1:430039..430701-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna792 ID=rna792|Name=rna792|organism=Nannochloropsis gaditana|type=mRNA|length=663bp|location=Sequence derived from alignment at CM002456.1:430039..430701- (Nannochloropsis gaditana)
ATGCAGCACGATTGGTCAGTGGTAGTGCTTCTAGAAGCTCTCCTGGCGTT
GTTGGTCCTCACGATTCCGGCACTATGGGAGGGTCGGGATGCCGCCATGA
TCGAGGTCAACGACAGCACACGCTTGCCACTTCCCACCCGCCTGTGGCGT
CTGGCTGGCATAATGGCCCTTGCCTCGTACACAAGCACCATTGTCACACA
CGCCACTGGTTTCTTGGAAATTGGGCCCAATGAAGCTCGGGAGCAAAGCC
TCAGATTCGTCGGCGGGGTGTTGATTGCAGCGCCGTATTTCTTCCTTTCA
GCCGTTGCTCTGGGAGCGCCGTGGAAAGAAATGGTGGATCGTACTGCGGC
GTGGGCCCTGATAATGGGCATATTGGTTGGTGGCCCCCTCGGTGCGGCTG
CTCCTAGCCTGCAACAACTGCGGTTGCCGCCTTTGTGGCAAGGTCCGCCG
GGCGAGACTGCTTTGATACGCTTTCGCGCACTGGGGTGCTGCGCGGGGGC
GTGGGTGGGTGCGTTTGTCGTACCATTGGACTGGGCCATGCCCTTCCAAG
AGTGGCCTCTACCTTTGGTTGTGGGAGCGGTTGCCGGGCACAGCCTGGGA
TCCTTCGCGGTCTACTGCGACCAGCGATGGACGCATGCCAAGGGTGTGGG
GCATGTCGACTGA
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Coding sequence (CDS) from alignment at CM002456.1:430039..430701-

>rna792 ID=rna792|Name=rna792|organism=Nannochloropsis gaditana|type=CDS|length=663bp|location=Sequence derived from alignment at CM002456.1:430039..430701- (Nannochloropsis gaditana)
ATGCAGCACGATTGGTCAGTGGTAGTGCTTCTAGAAGCTCTCCTGGCGTT
GTTGGTCCTCACGATTCCGGCACTATGGGAGGGTCGGGATGCCGCCATGA
TCGAGGTCAACGACAGCACACGCTTGCCACTTCCCACCCGCCTGTGGCGT
CTGGCTGGCATAATGGCCCTTGCCTCGTACACAAGCACCATTGTCACACA
CGCCACTGGTTTCTTGGAAATTGGGCCCAATGAAGCTCGGGAGCAAAGCC
TCAGATTCGTCGGCGGGGTGTTGATTGCAGCGCCGTATTTCTTCCTTTCA
GCCGTTGCTCTGGGAGCGCCGTGGAAAGAAATGGTGGATCGTACTGCGGC
GTGGGCCCTGATAATGGGCATATTGGTTGGTGGCCCCCTCGGTGCGGCTG
CTCCTAGCCTGCAACAACTGCGGTTGCCGCCTTTGTGGCAAGGTCCGCCG
GGCGAGACTGCTTTGATACGCTTTCGCGCACTGGGGTGCTGCGCGGGGGC
GTGGGTGGGTGCGTTTGTCGTACCATTGGACTGGGCCATGCCCTTCCAAG
AGTGGCCTCTACCTTTGGTTGTGGGAGCGGTTGCCGGGCACAGCCTGGGA
TCCTTCGCGGTCTACTGCGACCAGCGATGGACGCATGCCAAGGGTGTGGG
GCATGTCGACTGA
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Synonyms
Publications