EWM29900.1, cds771 (CDS) Nannochloropsis gaditana

Overview
NameEWM29900.1
Unique Namecds771
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:383690..383811 +
Alignment locationCM002456.1:383882..384020 +
Alignment locationCM002456.1:384122..384313 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29900.1
Productdynein light chain roadblock-type 1
Orig transcript idgnl|cribi|Naga_100035g35.3364.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:383690..383811 +
CM002456.1supercontigCM002456.1:383882..384020 +
CM002456.1supercontigCM002456.1:384122..384313 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
Vocabulary: INTERPRO
TermDefinition
IPR004942Dynein_light-rel
Homology
[Close]
BLAST of EWM29900.1 vs. NCBI_GenBank
Match: gi|585112482|gb|EWM29899.1| (dynein light chain roadblock-type 1 [Nannochloropsis gaditana] >gi|585112483|gb|EWM29900.1| dynein light chain roadblock-type 1 [Nannochloropsis gaditana] >gi|585112484|gb|EWM29901.1| dynein light chain roadblock-type 1 [Nannochloropsis gaditana])

HSP 1 Score: 312.383 bits (799), Expect = 6.875e-108
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 
Query:    1 MVSLFRFIFEYYKHNYVKFPFWKSQVEDILERIKTKPSVEGYLIANQTGQVLRRSPKMNEDEAHGMATTMRPLVLKAENVVRDLDPQNELQFLRIKTKNREIISTISTLKTVFFILGLRSYYAHTNLIYCRRRLSGDRPTAVEPVYRLTA 150
            MVSLFRFIFEYYKHNYVKFPFWKSQVEDILERIKTKPSVEGYLIANQTGQVLRRSPKMNEDEAHGMATTMRPLVLKAENVVRDLDPQNELQFLRIKTKNREIISTISTLKTVFFILGLRSYYAHTNLIYCRRRLSGDRPTAVEPVYRLTA
Sbjct:    1 MVSLFRFIFEYYKHNYVKFPFWKSQVEDILERIKTKPSVEGYLIANQTGQVLRRSPKMNEDEAHGMATTMRPLVLKAENVVRDLDPQNELQFLRIKTKNREIISTISTLKTVFFILGLRSYYAHTNLIYCRRRLSGDRPTAVEPVYRLTA 150
[Close]
BLAST of EWM29900.1 vs. NCBI_GenBank
Match: gi|298710679|emb|CBJ32104.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 88.9669 bits (219), Expect = 2.133e-20
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 0 
Query:   24 SQVEDILERIKTKPSVEGYLIANQTGQVLRRSPKMNEDEAHGMATTMRPLVLKAENVVRDLDPQNELQFLRIKTKNREII 103
            S+VE+ LERIK +P VEGY+I +  GQVLRR P M+++ A   A  MR L LKA  VVRD++P+ EL+++RI+ K  E++
Sbjct:    2 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVL 81
[Close]
BLAST of EWM29900.1 vs. NCBI_GenBank
Match: gi|675207777|ref|XP_008912773.1| (hypothetical protein PPTG_16947 [Phytophthora parasitica INRA-310] >gi|568086994|gb|ETN01872.1| hypothetical protein PPTG_16947 [Phytophthora parasitica INRA-310])

HSP 1 Score: 84.7297 bits (208), Expect = 1.198e-18
Identity = 41/80 (51.25%), Postives = 56/80 (70.00%), Query Frame = 0 
Query:   24 SQVEDILERIKTKPSVEGYLIANQTGQVLRRSPKMNEDEAHGMATTMRPLVLKAENVVRDLDPQNELQFLRIKTKNREII 103
            S+VE+ LERIK    VEGY+IA++ G VLRR P+M   EA   A  M+ L  KA  VVRDL+P+N+LQ++RI+ K  E++
Sbjct:    2 SEVEETLERIKNHKGVEGYVIADRNGNVLRRHPQMQVSEAEKYALYMKELTTKARGVVRDLNPKNDLQYMRIRVKKLELL 81
[Close]
BLAST of EWM29900.1 vs. NCBI_GenBank
Match: gi|673030318|ref|XP_008869120.1| (hypothetical protein H310_06011 [Aphanomyces invadans] >gi|574475515|gb|ETW02515.1| hypothetical protein H310_06011 [Aphanomyces invadans])

HSP 1 Score: 84.7297 bits (208), Expect = 1.238e-18
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 0 
Query:   24 SQVEDILERIKTKPSVEGYLIANQTGQVLRRSPKMNEDEAHGMATTMRPLVLKAENVVRDLDPQNELQFLRIKTKNREII 103
            S+VE+ LERIK    VEGY+IA++ G VLRR P M+   A   +T M+ L  KA  VVRDL+P+N+LQ+LRI+ K  EI+
Sbjct:    2 SEVEETLERIKNHKGVEGYVIADKNGSVLRRHPHMDPANAERYSTYMKELTTKARGVVRDLNPKNDLQYLRIRLKKFEIL 81
[Close]
BLAST of EWM29900.1 vs. NCBI_GenBank
Match: gi|566012621|gb|ETI35532.1| (hypothetical protein F443_18137 [Phytophthora parasitica P1569] >gi|567950053|gb|ETK75773.1| hypothetical protein L915_17663 [Phytophthora parasitica] >gi|567978725|gb|ETL29211.1| hypothetical protein L916_17556 [Phytophthora parasitica] >gi|568008214|gb|ETL82436.1| hypothetical protein L917_17396 [Phytophthora parasitica] >gi|568038135|gb|ETM35679.1| hypothetical protein L914_17449 [Phytophthora parasitica] >gi|570316320|gb|ETO64268.1| hypothetical protein F444_18159 [Phytophthora parasitica P1976] >gi|570940095|gb|ETP05352.1| hypothetical protein F441_18013 [Phytophthora parasitica CJ01A1] >gi|570970371|gb|ETP33490.1| hypothetical protein F442_17983 [Phytophthora parasitica P10297] >gi|970631305|gb|KUF77957.1| Dynein light chain roadblock-type 2 [Phytophthora nicotianae])

HSP 1 Score: 84.7297 bits (208), Expect = 1.395e-18
Identity = 41/80 (51.25%), Postives = 56/80 (70.00%), Query Frame = 0 
Query:   24 SQVEDILERIKTKPSVEGYLIANQTGQVLRRSPKMNEDEAHGMATTMRPLVLKAENVVRDLDPQNELQFLRIKTKNREII 103
            S+VE+ LERIK    VEGY+IA++ G VLRR P+M   EA   A  M+ L  KA  VVRDL+P+N+LQ++RI+ K  E++
Sbjct:    2 SEVEETLERIKNHKGVEGYVIADRNGNVLRRHPQMQVSEAEKYALYMKELTTKARGVVRDLNPKNDLQYMRIRVKKLELL 81
[Close]
BLAST of EWM29900.1 vs. NCBI_GenBank
Match: gi|698787532|ref|XP_009826798.1| (hypothetical protein H257_04112 [Aphanomyces astaci] >gi|574117887|gb|ETV83368.1| hypothetical protein H257_04112 [Aphanomyces astaci])

HSP 1 Score: 84.7297 bits (208), Expect = 1.410e-18
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 0 
Query:   24 SQVEDILERIKTKPSVEGYLIANQTGQVLRRSPKMNEDEAHGMATTMRPLVLKAENVVRDLDPQNELQFLRIKTKNREII 103
            S+VE+ LERIK    VEGY+IA++ G VLRR P M+   A   +T M+ L  KA  VVRDL+P+N+LQ+LRI+ K  EI+
Sbjct:    2 SEVEETLERIKNHKGVEGYVIADKNGSVLRRHPHMDPANAERYSTYMKELTTKARGVVRDLNPKNDLQYLRIRLKKFEIL 81
[Close]
BLAST of EWM29900.1 vs. NCBI_GenBank
Match: gi|301109333|ref|XP_002903747.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262096750|gb|EEY54802.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 84.3445 bits (207), Expect = 1.809e-18
Identity = 41/80 (51.25%), Postives = 56/80 (70.00%), Query Frame = 0 
Query:   24 SQVEDILERIKTKPSVEGYLIANQTGQVLRRSPKMNEDEAHGMATTMRPLVLKAENVVRDLDPQNELQFLRIKTKNREII 103
            S+VE+ LERIK    VEGY+IA++ G VLRR P+M   EA   A  M+ L  KA  VVRDL+P+N+LQ++RI+ K  E++
Sbjct:    2 SEVEETLERIKNHKGVEGYVIADRNGNVLRRHPQMQVAEAEKYAQYMKELTTKARGVVRDLNPKNDLQYMRIRVKKLELL 81
[Close]
BLAST of EWM29900.1 vs. NCBI_GenBank
Match: gi|695411579|ref|XP_009525512.1| (hypothetical protein PHYSODRAFT_262605 [Phytophthora sojae] >gi|348676637|gb|EGZ16454.1| hypothetical protein PHYSODRAFT_262605 [Phytophthora sojae])

HSP 1 Score: 84.3445 bits (207), Expect = 2.016e-18
Identity = 41/80 (51.25%), Postives = 56/80 (70.00%), Query Frame = 0 
Query:   24 SQVEDILERIKTKPSVEGYLIANQTGQVLRRSPKMNEDEAHGMATTMRPLVLKAENVVRDLDPQNELQFLRIKTKNREII 103
            S+VE+ LERIK    VEGY+IA++ G VLRR P+M   EA   A  M+ L  KA  VVRDL+P+N+LQ++RI+ K  E++
Sbjct:    2 SEVEETLERIKNHKGVEGYVIADRNGNVLRRHPQMQVAEAEKYALYMKELTTKARGVVRDLNPKNDLQYMRIRVKKLELL 81
[Close]
BLAST of EWM29900.1 vs. NCBI_GenBank
Match: gi|669147620|ref|XP_008609372.1| (dynein light chain roadblock-type [Saprolegnia diclina VS20] >gi|813146024|ref|XP_012199850.1| hypothetical protein SPRG_05883 [Saprolegnia parasitica CBS 223.65] >gi|813230800|ref|XP_012213079.1| hypothetical protein SPRG_18251 [Saprolegnia parasitica CBS 223.65] >gi|530738968|gb|EQC37210.1| dynein light chain roadblock-type [Saprolegnia diclina VS20] >gi|641519522|gb|KDO16213.1| hypothetical protein SPRG_18251 [Saprolegnia parasitica CBS 223.65] >gi|641535437|gb|KDO29347.1| hypothetical protein SPRG_05883 [Saprolegnia parasitica CBS 223.65] >gi|1173949891|gb|OQR97890.1| hypothetical protein ACHHYP_09879 [Achlya hypogyna])

HSP 1 Score: 83.5741 bits (205), Expect = 3.619e-18
Identity = 41/80 (51.25%), Postives = 56/80 (70.00%), Query Frame = 0 
Query:   24 SQVEDILERIKTKPSVEGYLIANQTGQVLRRSPKMNEDEAHGMATTMRPLVLKAENVVRDLDPQNELQFLRIKTKNREII 103
            S+VE+ LERIK    VEGY+IA++ G VLRR P M+   A   ++ M+ L  KA  VVRDL+P+N+LQ+LRI+ K  EI+
Sbjct:    2 SEVEETLERIKNHKGVEGYVIADKNGAVLRRHPHMDTASAERYSSFMKELTTKARGVVRDLNPKNDLQYLRIRLKKFEIL 81
[Close]
BLAST of EWM29900.1 vs. NCBI_GenBank
Match: gi|1214696817|gb|OWZ10243.1| (hypothetical protein PHMEG_00016937 [Phytophthora megakarya])

HSP 1 Score: 82.8037 bits (203), Expect = 6.565e-18
Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 0 
Query:   24 SQVEDILERIKTKPSVEGYLIANQTGQVLRRSPKMNEDEAHGMATTMRPLVLKAENVVRDLDPQNELQFLRIKTKNREII 103
            S+VE+ LERIK    VEGY+IA++ G VLRR P+M   EA   A  M+ L  K+  VVRDL+P+N+LQ++RI+ K  E++
Sbjct:    2 SEVEETLERIKNHKGVEGYVIADRNGNVLRRHPQMQVAEAEKYALYMKELTTKSRGVVRDLNPKNDLQYMRIRVKKLELL 81
The following BLAST results are available for this feature:
BLAST of EWM29900.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112482|gb|EWM29899.1|6.875e-108100.00dynein light chain roadblock-type 1 [Nannochlorops... [more]
gi|298710679|emb|CBJ32104.1|2.133e-2051.25conserved unknown protein [Ectocarpus siliculosus][more]
gi|675207777|ref|XP_008912773.1|1.198e-1851.25hypothetical protein PPTG_16947 [Phytophthora para... [more]
gi|673030318|ref|XP_008869120.1|1.238e-1852.50hypothetical protein H310_06011 [Aphanomyces invad... [more]
gi|566012621|gb|ETI35532.1|1.395e-1851.25hypothetical protein F443_18137 [Phytophthora para... [more]
gi|698787532|ref|XP_009826798.1|1.410e-1852.50hypothetical protein H257_04112 [Aphanomyces astac... [more]
gi|301109333|ref|XP_002903747.1|1.809e-1851.25conserved hypothetical protein [Phytophthora infes... [more]
gi|695411579|ref|XP_009525512.1|2.016e-1851.25hypothetical protein PHYSODRAFT_262605 [Phytophtho... [more]
gi|669147620|ref|XP_008609372.1|3.619e-1851.25dynein light chain roadblock-type [Saprolegnia dic... [more]
gi|1214696817|gb|OWZ10243.1|6.565e-1850.00hypothetical protein PHMEG_00016937 [Phytophthora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna771rna771Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications