EWM29895.1, cds766 (CDS) Nannochloropsis gaditana

Overview
NameEWM29895.1
Unique Namecds766
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:374331..374507 +
Alignment locationCM002456.1:374612..374765 +
Alignment locationCM002456.1:374954..375174 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29895.1
Product2fe-2s iron-sulfur cluster binding domain protein
Orig transcript idgnl|cribi|Naga_100035g29.3359.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:374331..374507 +
CM002456.1supercontigCM002456.1:374612..374765 +
CM002456.1supercontigCM002456.1:374954..375174 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR012675Beta-grasp_dom
IPR0010412Fe-2S_ferredoxin-type
Homology
BLAST of EWM29895.1 vs. NCBI_GenBank
Match: gi|585112478|gb|EWM29895.1| (2fe-2s iron-sulfur cluster binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 381.333 bits (978), Expect = 5.040e-134
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
Query:    1 MASALLAKKALRQALAVGAHSQATVGRRSGAVINSTGSSRRTLASVKDVTVNVTFINHEGLRITVPGRVGQSLLDVAQMHDIELESGCGGGGAVQQKKHSERWTEDLFGRGPCCHFCHVKIPSPWINTIHDKQPATEKEHELLEEHWQEEATDNSRLGCQVMLTKNLDGMQVFIPDGPPADCP 183
            MASALLAKKALRQALAVGAHSQATVGRRSGAVINSTGSSRRTLASVKDVTVNVTFINHEGLRITVPGRVGQSLLDVAQMHDIELESGCGGGGAVQQKKHSERWTEDLFGRGPCCHFCHVKIPSPWINTIHDKQPATEKEHELLEEHWQEEATDNSRLGCQVMLTKNLDGMQVFIPDGPPADCP
Sbjct:    1 MASALLAKKALRQALAVGAHSQATVGRRSGAVINSTGSSRRTLASVKDVTVNVTFINHEGLRITVPGRVGQSLLDVAQMHDIELESGCGGGGAVQQKKHSERWTEDLFGRGPCCHFCHVKIPSPWINTIHDKQPATEKEHELLEEHWQEEATDNSRLGCQVMLTKNLDGMQVFIPDGPPADCP 183          
BLAST of EWM29895.1 vs. NCBI_GenBank
Match: gi|298708886|emb|CBJ30843.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 137.502 bits (345), Expect = 4.812e-38
Identity = 73/171 (42.69%), Postives = 103/171 (60.23%), Query Frame = 0
Query:   11 LRQALAVGAHSQATVGRR--SGAVINSTGSSRRTLASVKDVTVNVTFINHEGLRITVPGRVGQSLLDVAQMHDIELESGCGGGGAVQQKKHSERWTEDLFGRGPCCHFCHVKIPSPWINTIHDKQPATEKEHELLEEHWQEEATDNSRLGCQVMLTKNLDGMQVFIPDGPP 179
            LR AL  G      + RR  SG  ++S  + RR L+S+++  V VTF++ EG R TV    GQ++ +VA+ H+I L+  C G     Q ++SE WTEDLFG+GP C  CHV +   +   I   +P  + E  LLE   +  A  +SRLGCQ+ L+++LDG+ VFIPDGPP
Sbjct:    2 LRTALQTGV---GCLPRRAASGGAVSSAQAGRRALSSLQEALVKVTFVDAEGDRETVSALPGQNIFEVAEKHEIALDGPCRGKAGAVQSRNSESWTEDLFGQGPVCASCHVMLTKEFTEKI---EPPLDSEISLLERKGELYAPGSSRLGCQIKLSRDLDGITVFIPDGPP 166          
BLAST of EWM29895.1 vs. NCBI_GenBank
Match: gi|669136618|ref|XP_008603877.1| (hypothetical protein SDRG_00189 [Saprolegnia diclina VS20] >gi|530744212|gb|EQC42454.1| hypothetical protein SDRG_00189 [Saprolegnia diclina VS20])

HSP 1 Score: 106.686 bits (265), Expect = 1.099e-25
Identity = 56/140 (40.00%), Postives = 85/140 (60.71%), Query Frame = 0
Query:   46 VKDVTVNVTFINHEGLRITVPGRVGQSLLDVAQMH--DIELESGCGGGGAVQQKKHSERWTEDLFGRGPCCHFCHVKIPSPWINTIHDKQPA-TEKEHELLEEHWQEEATDNSRLGCQVMLTKNLDGMQVFIPDGPPADC 182
            V+D  V VT +++EG R  + GRVGQ+L +  Q+   DI  +   GGGG+      +  +TE LFG GP     HV + + W++    K PA TE+E  +LE+  +E+ T NSRLG +++LTK+LDG+ V +P+ PP + 
Sbjct:   27 VRDHLVAVTLLDYEGSRHIIQGRVGQTLFEACQLSGLDIVKDDSLGGGGSAYSAVRTPEFTESLFGEGPSSPLSHVVVSNEWVH----KLPAPTEREARILEDVPEEDLTKNSRLGTEIILTKDLDGLVVAVPEAPPVET 162          
BLAST of EWM29895.1 vs. NCBI_GenBank
Match: gi|813178612|ref|XP_012205775.1| (hypothetical protein SPRG_11382 [Saprolegnia parasitica CBS 223.65] >gi|641529278|gb|KDO23459.1| hypothetical protein SPRG_11382 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 105.531 bits (262), Expect = 2.770e-25
Identity = 54/139 (38.85%), Postives = 82/139 (58.99%), Query Frame = 0
Query:   46 VKDVTVNVTFINHEGLRITVPGRVGQSLLDVAQMH--DIELESGCGGGGAVQQKKHSERWTEDLFGRGPCCHFCHVKIPSPWINTIHDKQPATEKEHELLEEHWQEEATDNSRLGCQVMLTKNLDGMQVFIPDGPPADC 182
            V+D  V VT +++EG R  + GRVGQ+L +  Q+   DI  +   GGGGA      +  +TE LFG GP     HV + + W+   H     +E+E  +LE+  +E+ T NSRLG +++LTK+LDG+ V +P+ PP + 
Sbjct:   27 VRDHLVAVTLLDYEGSRHIIQGRVGQTLFEACQLSGLDIVKDDSLGGGGATYSAVRTPEFTESLFGEGPSSPLSHVVVSNEWV---HKLPVPSEREARILEDVPEEDLTKNSRLGTEIILTKDLDGLVVAVPEAPPVET 162          
BLAST of EWM29895.1 vs. NCBI_GenBank
Match: gi|1173944902|gb|OQR93588.1| (hypothetical protein ACHHYP_02409 [Achlya hypogyna])

HSP 1 Score: 104.375 bits (259), Expect = 7.655e-25
Identity = 55/139 (39.57%), Postives = 85/139 (61.15%), Query Frame = 0
Query:   46 VKDVTVNVTFINHEGLRITVPGRVGQSLLDVAQMHDIEL--ESGCGGGGAVQQKKHSERWTEDLFGRGPCCHFCHVKIPSPWINTIHDKQPATEKEHELLEEHWQEEATDNSRLGCQVMLTKNLDGMQVFIPDGPPADC 182
            V+D  V+VT ++ EG R  V GRVGQ+L +  Q+  ++L  +   GGGGA+     S  +TE+LFG GP     HV I + W+   H     +E+E  +LE+  +E+ T NSRLG +++LTK+L+G+ V +P+ PP + 
Sbjct:   26 VRDHLVSVTLLDWEGSRHLVQGRVGQTLFEACQLAGLDLVKDDSLGGGGAMYSAVRSPEFTENLFGEGPSSPLSHVVISNEWV---HKLPLPSEREARILEDVPEEDLTKNSRLGTEIILTKDLEGLVVAVPEAPPIET 161          
BLAST of EWM29895.1 vs. NCBI_GenBank
Match: gi|1173960018|gb|OQS06186.1| (hypothetical protein THRCLA_01755 [Thraustotheca clavata])

HSP 1 Score: 109.768 bits (273), Expect = 1.664e-24
Identity = 57/138 (41.30%), Postives = 83/138 (60.14%), Query Frame = 0
Query:   46 VKDVTVNVTFINHEGLRITVPGRVGQSLLDVAQMH--DIELESGCGGGGAVQQKKHSERWTEDLFGRGPCCHFCHVKIPSPWINTIHDKQPATEKEHELLEEHWQEEATDNSRLGCQVMLTKNLDGMQVFIPDGPPAD 181
            V D  V+VT ++ EG R  V GRVGQ+L D  Q+   DI  +   GGGGA      +  +TE LFG GP     HV + + W N +    PA+++E  +LE+  +E+ T NSRLG +++LTK+LDG+ V +P+ PP +
Sbjct:   27 VHDRLVSVTLLDWEGSRHIVQGRVGQTLFDACQLSGVDIVKDDSLGGGGATYSAIRTPEFTESLFGEGPASPLSHVVVSNEWFNKL---PPASDRELRILEDVPEEDLTKNSRLGTEIILTKDLDGLVVAVPEAPPVE 161          
BLAST of EWM29895.1 vs. NCBI_GenBank
Match: gi|325182261|emb|CCA16715.1| (conserved hypothetical protein [Albugo laibachii Nc14] >gi|325187280|emb|CCA21820.1| conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 98.2117 bits (243), Expect = 2.154e-22
Identity = 52/137 (37.96%), Postives = 81/137 (59.12%), Query Frame = 0
Query:   44 ASVKDVTVNVTFINHEGLRITVPGRVGQSLLDVAQMHDIE-LESGCGGGGAVQQKKHSERWTEDLFGRGPCCHFCHVKIPSPWINTIHDKQPATEKEHELLEEHWQEEATDNSRLGCQVMLTKNLDGMQVFIPDGPP 179
            + V D+ V VT I++ G R  V GRVGQ+L    QM+DI+ L+    GGG V     S+ +TE LFG G      HV + + W+  +   +P  +++H L     +E+ + NSRLG +++LTK++DG+ V +P+ PP
Sbjct:   34 SKVSDIVVGVTLIDYSGNRQYVQGRVGQTLCQACQMNDIDLLKDDSNGGGDVHSAVRSDYYTESLFGEGSVSPTSHVIVSNEWMPRL--PRPNDQEQHILDVYVPEEDRSANSRLGTEIILTKDMDGLVVAVPEAPP 168          
BLAST of EWM29895.1 vs. NCBI_GenBank
Match: gi|673033788|ref|XP_008870855.1| (hypothetical protein H310_07275 [Aphanomyces invadans] >gi|574473717|gb|ETW00720.1| hypothetical protein H310_07275 [Aphanomyces invadans])

HSP 1 Score: 97.8265 bits (242), Expect = 2.375e-22
Identity = 52/139 (37.41%), Postives = 86/139 (61.87%), Query Frame = 0
Query:   46 VKDVTVNVTFINHEGLRITVPGRVGQSLLDVAQMH--DIELESGCGGGGAVQQKKHSERWTEDLFGRGPCCHFCHVKIPSPWINTIHDKQPATEKEHELLEEHWQEEATDNSRLGCQVMLTKNLDGMQVFIPDGPPADC 182
            V+D  V+VT ++ EG R  V GRVGQSL + +++   DI  +   GGGGA      +  +TE+LFG GP     HV + + W++ +   QP TE+E  +L++  +E+ T+NSRL  +++L+K+L+G+ V +P+  P + 
Sbjct:   26 VRDQIVSVTLLDWEGSRHIVQGRVGQSLFEASRLAGLDIIQDDSLGGGGASYSAVRTPEFTENLFGEGPSSFLSHVVVSNEWVDKL--PQP-TEREVRILQDVPEEDWTENSRLATEIILSKDLEGLVVAVPEAQPIET 161          
BLAST of EWM29895.1 vs. NCBI_GenBank
Match: gi|698786414|ref|XP_009826239.1| (hypothetical protein H257_03721 [Aphanomyces astaci] >gi|574119067|gb|ETV84547.1| hypothetical protein H257_03721 [Aphanomyces astaci])

HSP 1 Score: 97.4413 bits (241), Expect = 3.274e-22
Identity = 53/140 (37.86%), Postives = 84/140 (60.00%), Query Frame = 0
Query:   46 VKDVTVNVTFINHEGLRITVPGRVGQSLLDVAQMH--DIELESGCGGGGAVQQKKHSERWTEDLFGRGPCCHFCHVKIPSPWINTIHDKQP-ATEKEHELLEEHWQEEATDNSRLGCQVMLTKNLDGMQVFIPDGPPADC 182
            V+D  V+VT ++ EG R  V GRVGQSL + +++   DI  +   GGGGA      +  +TE+LFG GP     HV + + W+    DK P  T++E  +LE+  +++ T NSRL  +++LTK+L+G+ V +P+  P + 
Sbjct:   26 VRDQIVSVTLLDWEGSRHVVQGRVGQSLFEASRLSGLDIIQDDTLGGGGAAYSAIRTPEFTENLFGEGPASFLSHVVVSNEWV----DKLPLPTDREVRILEDVPEDDWTKNSRLATEIILTKDLEGLVVAVPEAQPIET 161          
BLAST of EWM29895.1 vs. NCBI_GenBank
Match: gi|855300262|ref|XP_012893672.1| (uncharacterized protein [Blastocystis hominis] >gi|300120070|emb|CBK19624.2| unnamed protein product [Blastocystis hominis])

HSP 1 Score: 92.0485 bits (227), Expect = 2.054e-20
Identity = 53/145 (36.55%), Postives = 78/145 (53.79%), Query Frame = 0
Query:   31 AVINSTGSSRRTLASVKDVTVNVTFINHEGLRITVPGRVGQSLLDVAQMHDIELESGCGGGGAVQQKKHSERWTEDLFGRGPCCHFCHVKIPSPWINTIHDKQPATEKEHELLEEHWQEEATDNSRLGCQVMLTKNLDGMQVFIP 175
            A     G S    ++V + T+++TFI  +G   TV  R+G ++LD A+ + + +   C G G  +  K +E WTE+ FG GP C FCHV +PS  ++ + +K  A E E     E      T  SRL CQV +TK ++G   FIP
Sbjct:   14 ATYACIGRSISWTSAVAENTIDLTFITPKGESKTVKARIGDTVLDTAEAYGLPICGDCHGAGLPRAVKRTENWTEETFGEGPSCAFCHV-VPSLELSKVLEKPTAQELE---FIEKIPIGKTPRSRLACQVPVTKEMNGGVFFIP 154          
The following BLAST results are available for this feature:
BLAST of EWM29895.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112478|gb|EWM29895.1|5.040e-134100.002fe-2s iron-sulfur cluster binding domain protein ... [more]
gi|298708886|emb|CBJ30843.1|4.812e-3842.69conserved unknown protein [Ectocarpus siliculosus][more]
gi|669136618|ref|XP_008603877.1|1.099e-2540.00hypothetical protein SDRG_00189 [Saprolegnia dicli... [more]
gi|813178612|ref|XP_012205775.1|2.770e-2538.85hypothetical protein SPRG_11382 [Saprolegnia paras... [more]
gi|1173944902|gb|OQR93588.1|7.655e-2539.57hypothetical protein ACHHYP_02409 [Achlya hypogyna... [more]
gi|1173960018|gb|OQS06186.1|1.664e-2441.30hypothetical protein THRCLA_01755 [Thraustotheca c... [more]
gi|325182261|emb|CCA16715.1|2.154e-2237.96conserved hypothetical protein [Albugo laibachii N... [more]
gi|673033788|ref|XP_008870855.1|2.375e-2237.41hypothetical protein H310_07275 [Aphanomyces invad... [more]
gi|698786414|ref|XP_009826239.1|3.274e-2237.86hypothetical protein H257_03721 [Aphanomyces astac... [more]
gi|855300262|ref|XP_012893672.1|2.054e-2036.55uncharacterized protein [Blastocystis hominis] >gi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna766rna766Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications