rna766, rna766 (mRNA) Nannochloropsis gaditana

Overview
Namerna766
Unique Namerna766
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1740
Alignment locationCM002456.1:374179..375407 +

Link to JBrowse

Properties
Property NameValue
Product2fe-2s iron-sulfur cluster binding domain protein
Orig transcript idgnl|cribi|Naga_100035g29.3359.mrna
Orig protein idgnl|cribi|Naga_100035g29.3359
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:374179..375407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100035g29gene734Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna766rna766-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29895.1cds766Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna766 ID=rna766|Name=rna766|organism=Nannochloropsis gaditana|type=mRNA|length=1740bp
GCTATGGAGGGCATCGTTAACCGACACATTTAAGCCTTGTCCTTCCTACT
ATGCATAACTCTGGTAGCGCTCCAATCAAGTTTCAATCGCTTCTAAGCCC
TCCCCATACACCTTGTAGGGCCGCTCGCTCAAAAAGTGCAGCGACTGTCG
AGCATTGATATATGGCCAAACTTTCATGCGCTCCTTCAGATGCACCATCC
GCCGATCCACCTTCTGAAACGCTCCATGTGACTTTCCTCCACCTGGATCT
GGGAATTGGGGGGGCGGAGCAGCTTATTGTGAATGCTGCCGTGGCCTTGC
AGCAACTGGAGCATCACGTCACGATATGGACCACCCACCATGACGCCTCC
CATTGCTTTGGTGAGACCCGGGGCGCCGGGTCATTGGCTTCCCACATCCA
TGTTGCCGGTGATTGGCTTCCTAGACATGTACTTGGTCGCTTTACGGCCA
TGTGCGCGGTGATCCGTATGCTCTATTTGGCATTGGTAGTTTGGATATCG
ACGTTGAGCTTGAGGAAATCAAGCTGCCGACATTCAGAGCGCAAGAAGGG
ACAAATTGATCGTCGCGTTGATGTTGTAATATGTGACGGCGTTTCGGCCA
TGGTCCCTTTACTGCGTTACGTTTGTGGCTTCCCAGTGTTGTTCTACTGC
CATTTTCCAGATAAACTTTTGTGCACTAACAGGGCCTCGGTTTGGAAGCG
ATTCTACCGCGCCCCGTTGGATTGGCTGGAGGAAAAAACAACTGGTGCAG
CAACCCTGATAGCTGTCAATAGTCTCTTCACTGCAAAGATCTTCGCGGAG
ACATTTCCTCGTCTCCTTTCTCGGCACCCTGCTCCTGCTGTCATACACCC
AGCCATTAATTTAGGAAGATTTGTGCCACCTAAAGCGGGAGCGTCCGCGT
TCCCCACACATGACGCTACTCAGGAAGAGACAAAAGGAGCGGTCCGGAAA
GAGGATGCGCTTCGTCCTTTCGTCTCCCTCAATCGTTTCGAGCGCAAGAA
GAACATCGGCCTTGCCCTAGAGGCTTTGGCCTTGCTGCGAACCCGCCTCG
AGACCGATTGGGCCGACGGACACGTGAACGGCTCAAGCTCCCTTCGACTC
GTCATTGCCGGAGGCTACGACGAGGCGGTGCGGGAGAACAGGGAGTACAT
GGACGACCTCCAAGCGCGCGCCTCTGCGTTAGGGGTGGCAGAGAGCATTT
CATTTCAGCCCTCGATTTCAGATTCCGAGCGGGCCGCGTTGTTACAAGAT
GCCCTGGCTGTGTTGTACACTCCAGACCGGGAGCATTTTGGCATCGTGCC
ATTGGAAGCCATGTACGCGGGCAGCCCGGTGGTAGCGGTAGCTTCCGGAG
GGCCGTTGGAGACCGTGGTTGACGGGACCACGGGGTTTCTGTGCCAGGGC
GACCCAGAGTGCTTTGCCAATGCCATGTATAGATTTGTGGTCGACCCGAC
ATTGAAAGAAACGATGGGAGCAGCGGGCCATGTCCATGTCAAAGAGAAGT
TCGGATTGGATATGTTCGCAAAGACGTTGGAAGGGGCAGTTCTGGACACG
AGGAGGCAGGCACAAAGAGAGAGGGATGATGACCAGGGGGAAAGAAGGGA
GATAATGATTTCAGTCACGGGAATAACGATCCTTCTGCTCGCATGTGGAT
TATATCACGTTTTCCATCTGTTATGACGATGGAAATAAGAGAAAGCGAAT
AAATACGCATATTTTAAAAACAAAATAGCGCTTACTTGCA
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protein sequence of rna766

>rna766-protein ID=rna766-protein|Name=rna766|organism=Nannochloropsis gaditana|type=polypeptide|length=183bp
MASALLAKKALRQALAVGAHSQATVGRRSGAVINSTGSSRRTLASVKDVT
VNVTFINHEGLRITVPGRVGQSLLDVAQMHDIELESGCGGGGAVQQKKHS
ERWTEDLFGRGPCCHFCHVKIPSPWINTIHDKQPATEKEHELLEEHWQEE
ATDNSRLGCQVMLTKNLDGMQVFIPDGPPADCP
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mRNA from alignment at CM002456.1:374179..375407+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna766 ID=rna766|Name=rna766|organism=Nannochloropsis gaditana|type=mRNA|length=1229bp|location=Sequence derived from alignment at CM002456.1:374179..375407+ (Nannochloropsis gaditana)
TGAGACGGTAGTCGTGTGGGCCAGTCCAACCTACGATCGAATCGTTGGGC
TGGGGTAGACAAAAGGAGACATTGTGCATCGACACTTGTTCCAATCTTTC
CTGCCTTACCCACGCCAATTCGACAATATCTCGCATATGCATACAGGCAC
TCATGGCGTCGGCGCTTTTGGCCAAGAAAGCGCTGCGTCAAGCCCTGGCT
GTGGGAGCACACAGCCAAGCAACAGTGGGGAGACGTTCAGGAGCAGTAAT
CAATAGTACTGGGAGCAGCCGACGCACACTCGCTTCGGTGAAGGATGTGA
CCGTCAATGTGACATTTATCAACCACGAGGTAGGGTGTATGTGTCGGGTG
GCAGAGTTCTTTGCTTACACCAGGCCGAATGGAAATGGGGAGAGGACCCG
CCCTTTTTTCTGATTGTTACCGTTGTCACGTAGGGCTTAAGGATAACGGT
GCCGGGCCGAGTAGGCCAGAGCCTTCTGGATGTGGCGCAGATGCACGATA
TTGAGCTAGAGTCGGGatgtggaggcggtggggcggTACAGCAGAAGAAG
CATTCTGAGCGGTGGACGGAGGATTTATTCGGGCGCGGTAAGTCCGAGAG
TATTCTATATAGATGGACAGCTATACCCTACCTACAGATTTTCGGGGGGA
ACGTCGGAAGAAGGCTGTCCGTGGATTTTAGAGACACTCAAGAGGGCGAG
CTTAAGCCCCCTCTCAGTGTTTGAGAGGGATCGCTGCGGCTGATTTCCTC
TTGCAACCACCTTTTCTTGTGACAGGCCCTTGCTGTCATTTTTGCCACGT
AAAaatcccttccccttggaTCAATACCATTCATGACAAGCAACCAGCAA
CCGAGAAGGAGCACGAATTGCTGGAAGAGCACTGGCAGGAGGAAGCCACA
GACAACTCCCGGCTTGGCTGTCAAGTCATGCTGACGAAAAACCTCGACGG
CATGCAGGTCTTCATCCCCGATGGACCGCCTGCGGACTGTCCGTAGAGAG
ATCATTACAATTTGAGAGCTGCCACAGGCGGGCTGCGGGAGAGGTGCTGC
TCGCTCAAGGTCGGCAACAAACAGGTTGAAACCGGGATTTGATGCAAAGT
AGGTTTCGCGATATCGTTGAAGCGATCATGATTATGAATGGTAATGCTGC
CGACAAGATGGAGAGTCTGTGGGCCAGGCCATGaataaaaaagaaaaaga
agtgCACATTTTTTGGCAGTGTCCGTCGA
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Coding sequence (CDS) from alignment at CM002456.1:374179..375407+

>rna766 ID=rna766|Name=rna766|organism=Nannochloropsis gaditana|type=CDS|length=1656bp|location=Sequence derived from alignment at CM002456.1:374179..375407+ (Nannochloropsis gaditana)
ATGGCGTCGGCGCTTTTGGCCAAGAAAGCGCTGCGTCAAGCCCTGGCTGT
GGGAGCACACAGCCAAGCAACAGTGGGGAGACGTTCAGGAGCAGTAATCA
ATAGTACTGGGAGCAGCCGACGCACACTCGCTTCGGTGAAGGATGTGACC
GTCAATGTGACATTTATCAACCACGAGGGCTTAAGGATAACGGTGCCGGG
CCGAGTAGGCCAGAGCCTTCTGGATGTGGCGCAGATGCACGATATTGAGC
TAGAGTCGGGatgtggaggcggtggggcggTACAGCAGAAGAAGCATTCT
GAGCGGTGGACGGAGGATTTATTCGGGCGCGGCCCTTGCTGTCATTTTTG
CCACGTAAAaatcccttccccttggaTCAATACCATTCATGACAAGCAAC
CAGCAACCGAGAAGGAGCACGAATTGCTGGAAGAGCACTGGCAGGAGGAA
GCCACAGACAACTCCCGGCTTGGCTGTCAAGTCATGCTGACGAAAAACCT
CGACGGCATGCAGGTCTTCATCCCCGATGGACCGCCTGCGGACTGTCCGT
AGATGGCGTCGGCGCTTTTGGCCAAGAAAGCGCTGCGTCAAGCCCTGGCT
GTGGGAGCACACAGCCAAGCAACAGTGGGGAGACGTTCAGGAGCAGTAAT
CAATAGTACTGGGAGCAGCCGACGCACACTCGCTTCGGTGAAGGATGTGA
CCGTCAATGTGACATTTATCAACCACGAGGGCTTAAGGATAACGGTGCCG
GGCCGAGTAGGCCAGAGCCTTCTGGATGTGGCGCAGATGCACGATATTGA
GCTAGAGTCGGGatgtggaggcggtggggcggTACAGCAGAAGAAGCATT
CTGAGCGGTGGACGGAGGATTTATTCGGGCGCGGCCCTTGCTGTCATTTT
TGCCACGTAAAaatcccttccccttggaTCAATACCATTCATGACAAGCA
ACCAGCAACCGAGAAGGAGCACGAATTGCTGGAAGAGCACTGGCAGGAGG
AAGCCACAGACAACTCCCGGCTTGGCTGTCAAGTCATGCTGACGAAAAAC
CTCGACGGCATGCAGGTCTTCATCCCCGATGGACCGCCTGCGGACTGTCC
GTAGATGGCGTCGGCGCTTTTGGCCAAGAAAGCGCTGCGTCAAGCCCTGG
CTGTGGGAGCACACAGCCAAGCAACAGTGGGGAGACGTTCAGGAGCAGTA
ATCAATAGTACTGGGAGCAGCCGACGCACACTCGCTTCGGTGAAGGATGT
GACCGTCAATGTGACATTTATCAACCACGAGGGCTTAAGGATAACGGTGC
CGGGCCGAGTAGGCCAGAGCCTTCTGGATGTGGCGCAGATGCACGATATT
GAGCTAGAGTCGGGatgtggaggcggtggggcggTACAGCAGAAGAAGCA
TTCTGAGCGGTGGACGGAGGATTTATTCGGGCGCGGCCCTTGCTGTCATT
TTTGCCACGTAAAaatcccttccccttggaTCAATACCATTCATGACAAG
CAACCAGCAACCGAGAAGGAGCACGAATTGCTGGAAGAGCACTGGCAGGA
GGAAGCCACAGACAACTCCCGGCTTGGCTGTCAAGTCATGCTGACGAAAA
ACCTCGACGGCATGCAGGTCTTCATCCCCGATGGACCGCCTGCGGACTGT
CCGTAG
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Synonyms
Publications