rna753, rna753 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna753
Unique Name	rna753
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3337
Alignment location	CM002456.1:341908..344940 +

Link to JBrowse

Properties


Property Name	Value
Product	polyadenylate-binding cytoplasmic and nuclear-like protein
Orig transcript id	gnl\|cribi\|Naga_100035g12.3383.mrna
Orig protein id	gnl\|cribi\|Naga_100035g12.3383
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:341908..344940 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100035g12	gene723	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna753	rna753-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29919.1	cds753	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:341908..344940+
coding sequence from alignment at CM002456.1:341908..344940+

mRNA sequence

>rna753 ID=rna753|Name=rna753|organism=Nannochloropsis gaditana|type=mRNA|length=3337bp
TGCACCCAGAAACGATCATTATTAATGCCTTTCCCTTCGATGCATGGTGA
GGCAAATATTGTGGACGAAGAAAAGGCATGTTTATTGAATAACGGAGGCA
AGCGGTATGATGGGGAATCCACAATCGACACGAGCGCCAATCCTACGACA
CGATTGCGGCCCCCACCGATAACAACTCGCAATTCATCAACGGATATAAA
TAGTGACGAGCAAGATGCAATTCGACGGCCGGGTAGTGGAAAGGCAACCA
AGAAATCGCGGGGCAGTTCTATCACGGACGTCTGGCGCTCGCTTTCCTCC
TCAAGGAGCTATACCTACGGTCCCACAATCCATAGAGCAGGTGCTTCCGA
AGAGGAGTGGAGGAGCCTTACTAGTAGAATTAGTGGCAATGACGGTAGCG
CACACATGCAGAACTGGGGAATGGGGGCGCGAAGGCAACCCTCGCAGAAG
TGGCAGAGCCTGGACGTCTATCAGTCCTTGGCTGGCGTGACGCGGCATCC
CACCCTGGCTCACGAAGGCTACTACAACCGGGGCGCTAATTGCTTCTTTA
TGTTGTGGCGTATGATGGAGGCATCGATTTTGCTTGCCCTCACGGGATTG
CTGACCGCCGTTGTGACCTTGATCGTCAATATATCCGTCTTCTACTTCGC
GCCAGCCCGGTACCTCATCGTGAACGCCATGGACTGGAAAGAAAACCACT
TGGTTGCGGCCTCCATCTTCACACTCTACGTGGCTATCCTCAGTGTTATC
TCTGCTCTTGTCACCAACCGCATCTGCCCAGAATCTGTGGGGGGAGGCAT
CCCCGACGTCAAAACCGTCCTCTCCGGCCTCATCAGCACCCCGGTCCTCT
CCATACGATTGATCTGGGCAAAGATGCTAGGGTTGATTTTCGCCTTGATC
GCGGGTCTGTCAGTGGGGAAAGAGGGGCCATTCGTGCACGTGGCCGTGGC
CATATCCGACAGCCTCATGCGCCTTCACTGCTTCCGCCACTGTCGTCGAA
ATACGTCCAAGCGGTTGGAGATTCTGGGCTGTGCCTCCGCGGCAGGTGTA
GCGTCCACGTTCGGCACGCCCTTTGGGGGAGTCCTCTTCTCGATCGAAGT
CACCGCTACCTACTACATGGTACGGAACCTGCCTCGGGCCTTTTTTTGTG
CCATCTGTGCGGCGCTGGTCTACGAAATTGCCGGGCTCCGAGACACCTTC
GCGCTTTTCACGGACGACCACGACCGGGTCCAAGGCTACTTAGTCTTTGA
CCTGTTGTTGTGCTGCGGCTTGGGCTTGTTGTGCGGGCTCTTCGGTGCCC
TCTTCGTGGGCGTCATCTCCGCGCTCTGCAGTCTACGTAATCGCTACCTG
AGTTTCTCCTTAGGCTGGCCCGTGGTGGCGCGGCGGCGGGTGTGGATGGT
CCTGGCCACGGCCTTGGTAGTCGCCCCTCTGATCTACCTCGACATGGTCT
CGGGGCTTCCCCAGGGCGGGCCCAGGCCGAAGCCCTTGACGGACTACATG
TTCCGCAGTGGCATCATTGGCGTGAGCGGGCCCTTGGCCTTGTACGCGGT
GTTCAAGTTCCTGGTCACTGCCCTCTGCGTGTCCTTGCCCTTGCCGGTGG
GTCTCTTCACACCGACCTTTGTGACGGGGGGGGCGGTTGGTCGGCTCTTT
GGGGAGATCGTCCATTTTTTTTACCCCACGGACCGCATCACCAGTCTGGA
GCCCTGGGAGTTTGCGGTCATTGGGGCCGCGGCCTTCTCGTCGGGCGTGA
CCCGGGCCGTGTCCACCGCCGTCATTGTCTTCGAGCTCTCGGGCCAGAAC
CACCTCCGACTGCCCATCTCGGTTGCCCTCTTGCTCGCCTACTTCGTCGC
CAACCGCTTCACCAAGAACGTCTACGACGAACTCCTGGATACGAACGGCA
CGCCCAGCCTGCCCGAGCTCCCCGCGGAACTCTACATGGTCACGGCGGCT
CAGGTCATGCGTCCGGTCGACCAAGGGCCGTACTTGACCCTCTCTTCAAC
CTTCGCGGAGGCCGAGAAAGTGCTGCTCCGGTGCGGGGGTTCCGAGTGGT
TGATCCCCGTGGTGGACACGGACGAATCCATGCATTTGCAAGGGGCGGTG
CTGGCGGAGGATTTGAAAGTGGCTGTGAACGGCTTGTACGTCCAACTCCA
TGCATTGGAGGACGGGGAGGAGGAATGCGTGCGTACGCAGCCGGGAGGGA
GCGGGGCGTCTCATCGGCTTGGCAGAGAGACAGGAAAGGAATTCTTGCGT
CGAAAGGTGACCTTTTCAGACGATTCTGAGCAGGAAAAGCGGGGGAGCAC
CCTGCAAAGGGGGTCGGAAGATGAGAAGAAGGGGCCAGCGGAGGCACCAG
ATTTGGGGGTGGTGGGCGGTGGAAAGGATGAGGAAGGAAGGGAAGACCAC
ATTGATCTTTCCAACAGCGCCAAAAGCGTGGCCATGGGCATGCCTCTGCA
CATTGTCGTCCTCCGTGACCGAGACACGGTTGACACCCTCACTCCCTCCC
GACGACGCCGACTTTCCTCTCTTTCATCCTCCAAGGCTACCTACCTAACC
CCTCCTCCCCTAATCATGGATCCAAGCCCTTATCAAGTCGGGGACCGGAC
CCTTTTGAGCAAGGTGGATTTTAGCTTTCGCATGCTGAAAGTGACACAGG
CATACGTAGTGCGGTCCGGTCGGCTGTTGGGCGTTTTGACACGGGACAGC
TTGACTGAGTTTGTGGGCACGCGGGAGAAAAAGCCGATGCACCGGTGTTT
GCAGCTCCTGGGGTCATGTTGGGATTCTCTTTGTTGCTGCTTTCGATCGA
GGAGGCCGAAAGTTGGGGAAGAAGAAAGGAGTAGGGTGCCGCCTACGAAC
AGTGGGTCTAGATGGAGCTCGTATCAAGCGCTCCCGCGCTATTCTGTTTT
TGAGGAAGGAAAAAAGAGCGGCGGTATAGAGCATGGAGGGGCTGTCATGG
AAAGGGGAGGGGGAGGACCATCCGAAGGGACGAGACACCAAGAAGGTGAC
AGGCCAGAGTGCGTGCTGAACAGCGTCTTGTAACAGATTGACCACAGGAA
ATGTTTGCTATCAAATGACATTGAATGAAATGAGAGTACATCTGGGCAAA
TGAACTACGTAGAGTGAGCTACGCAGGTGGGGATGACATGTGGATAGACT
AAAATCGGGCGGGATGCCGCTCCTAGGAGAAAATTTGGCAGCAGCTGTGG
CCACTTTGTGAAACAATATTGGCTTCAGCAAATGGTACGTCTTATGTTTT
AGTGAACATTTTGAGACTGCGTGGAATTTCCAAGAGAGAGTTCATTCAGG
AACGTGGACGAAAGAAGTGAGTCCTAGAACACAGGAT

protein sequence of rna753

>rna753-protein ID=rna753-protein|Name=rna753|organism=Nannochloropsis gaditana|type=polypeptide|length=686bp
MSDHDMFAPMGYQSASAAATIAAYTFNKQHEEHQQQNQMQYGGITHVVGN
SQATAGPASFGGVSKSTAGKPTMSHLESLSDQHRHEQYQNLQSLLTTRSS
GSAQRAGNLSSSTQCNNQGQGTLMTASPHHLPLHLPSSAGQQHSGAMHSQ
EYSSLSSGPPPFPPFHPLSTSSDGYQHNQAGASANALPVPPSVTPKQRQY
YLKRALESFTKEHLTTLLCDIANNMGGSVFEEAYERACLDLANRKVFVRG
IAWGTTSDSLGEALSVFGTIQEAAVICDRVTGKSKGYAFVTFDHGESAFR
LLELPYISIDGRNVQCFLASQRGSGSGASGDTHGPQTSHGHPTPFGGKDA
GPHHNYHNPQPPSRYTPPYRPQYTAPPPQPTPQPRQYPAPSTAVTSYHVN
MHHSAGPPTSVPSFAPGAMHVGVGAGGPDMARPHFHKADSVESLKDEKIV
GGSSDNVGQGEAKPVGVRENPAITPTESRRRSFPGPELTQIQGGRHGVIG
IPPGREGLAEVGDARGNASASTSPPGPGEFSSTSSNSNTSSKHARQVVVR
GLGMDSNQELLARLFLGEGELEDVLFLGNPTTHAPMGAALITFWEARSAA
LALLTPFRSLPCGRVCEVMSVPPPPSVSSVSSSSSTVGEENDVKNHECFL
SQSAQQAQATQEQEGNVYNVGESGLPQMKEGGKWHQ

mRNA from alignment at CM002456.1:341908..344940+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna753 ID=rna753|Name=rna753|organism=Nannochloropsis gaditana|type=mRNA|length=3033bp|location=Sequence derived from alignment at CM002456.1:341908..344940+ (Nannochloropsis gaditana)
CACACCCATAATTTAATGGtgcaaggaggagcgacCAATGCTTTTAAGCA
GGAAGAATCATGCACAAATTATCATCAACCTTGATTGAAATGACATAAAA
TGTACGCAAATATGTAGGGTGGACATTATATTGAGCGGCAAAGCTGGAAA
TCAGCGGCAGCAGTCGCACAATCGACGTGATGAGCGACCATGACATGTTT
GCACCCATGGGATATCAAAGCGCCTCTGCAGCTGCTACCATAGCGGCCTA
CACTTTCAACAAACAGCATGAAGAGCATCAACAGCAAAATCAAATGCAAT
ACGGAGGTATTACACACGTCGTGGGCAATTCCCAAGCAACGGCCGGGCCG
GCCTCTTTCGGTGGAGTGAGCAAGAGTACAGCGGGAAAGCCAACAATGTC
CCATTTAGAAAGTTTATCCGACCAACATCGACACGAACAATATCAAAACC
TGCAGTCCTTGCTAACCACCCGGAGCTCCGGTAGTGCTCAACGCGCGGGG
AACTTGAGCAGCAGTACACAATGCAATAACCAAGGCCAAGGAACTCTCAT
GACAGCCTCCCCCCACCATCTTCCCTTGcatttgccttcctccgccgggc
AACAACACTCTGGCGCCATGCACTCCCAAGAGTACTCGTCCCTTTCATCg
ggtcctccgcccttccctccctttcatccGCTCTCAACATCCTCGGATGG
ATACCAGCACAATCAAGCCGGGGCCTCCGCGAatgccctccccgtccccc
cctctgTAACGCCCAAGCAACGGCAATACTATCTGAAACGGGCCCTGGAA
TCCTTCACGAAAGAGCACCTGACCACCCTCCTCTGCGACATTGCCAACAA
CATGGGCGGAAGCGTTTTCGAGGAGGCCTACGAGCGTGCCTGCCTGGACC
TGGCGAACCGGAAGGTCTTCGTCCGAGGAATCGCCTGGGGGACCACCAGC
GATTCCCTCGGCGAGGCTCTCTCCGTCTTTGGGACGAtccaggaggcggc
cgtgatCTGCGACCGTGTCACTGGAAAGAGTAAGGGCTACGCCTTTGTGA
CCTTCGACCATGGGGAGTCCGCCTTCCGCCTCTTGGAGTTACCCTACATC
TCCATAGACGGCCGCAACGTCCAGTGCTTCCTGGCCTCGCAGCGGGGCTC
GGGCAGTGGTGCCAGCGGAGACACGCATGGGCCACAGACTAGCCACGGAC
ATCCAACTCCCTTCGGAGGCAAGGACGCCGGTCCCCACCACAATTACCAC
AACCCCCAGCCGCCCTCCCGATACACCCCCCCCTACCGGCCTCAGTACAC
AGCCCCGCCTCCGCAGCCCACGCCGCAACCGCGCCAATACCcggcccctt
ccaccgcgGTGACTTCCTACCATGTGAACATGCACCATTCTGCGGGACCC
CCCACGTCCGTGCCGTCCTTTGCTCCCGGCGCCATGCACGTGGGCGTAGG
CGCCGGAGGGCCGGACATGGCCAGACCCCACTTCCACAAGGCGGACTCGG
TCGAGAGTCTCAAAGATGAGAAGATTGTGGGCGGATCATCTGACAACGTC
GGCCAAGGGGAAGCGAAGCCGGTTGGGGTCCGTGAAAATCCAGCAATTAC
CCCGACGGAAAGCCGACGTCGGTCTTTTCCCGGACCCGAGTTGACCCAGA
TCCAAGGCGGAAGGCACGGCGTGATTGGCATTCCTCCGGGCCGCGAAGGC
CTCGCTGAGGTCGGGGACGCCCGTGGCAatgcctctgcctccacgtCACC
GCCAGGGCCGGGGGAAttcagcagcaccagcagcaacagcaacactAGTA
GCAAGCACGCGAGGCAAGTTGTGGTGCGAGGGCTGGGGATGGACTCCAAT
CAGGAGCTTTTGGCGCGCTTGTTCCTGGGTGAGGGTGAATTGGAAGACGT
GCTGTTCTTGGGCAATCCCACCACACACGCGCCGATGGGGGCTGCACTTA
TTACTTTCTGGGAGGCGCGTTCGGCAGCATTGGCCTTGCTGACGCCATTT
CGAAGCCTGCCGTGCGGGAGAGTCTGCGAGGTGATGtcggtgcctcctcc
tccctctgtctcgtccgtatcctcttcctcatcgacGGTCGGGGAAGAGA
ATGACGTGAAGAATCACGAATGCTTCCTATCTCAGTCGGCGCAGCAAGCC
CAAGCAACGCAGGAACAGGAGGGAAATGTTTACAATGTAGGAGAATCAGG
GCTGCCACAgatgaaagaaggaggaaaatggcacCAGTAGATTGCTAGAA
GCGCCCACCCGCGGTATGAGACGAGAGCGAAAAACAACGGCGACATTcgc
aggaaagaaagcgcaAAGTATGCCAGAATAGGGCTTTGTTGGATAAAGGA
CAGAAGATAATAACAAGAAATCAAATTGATTGAAGCCGTGCATAAGTAGG
TTGACTGAAAGCATACACTGAAACTTAGGTAGAATATCTCGAGTGAGATG
ATGAAAAGGACTAGGACCGCAAGAGCTCGCACAGGAAGAAAATTCTAACG
TGACATGACGCGTAGGACTAAATTCATTACGGCGTTGACAACCCTTGAAG
ATACATATGATCGGTAGGATCCTGAGGAAAATGCAGACTGATGGGTACAG
AGTCCAGGCTTCAtcaagaaaaggaaaagaagggaagcctCTGATGCAGA
GTATATCAGTAAGGGGTGAAATGCACCAAAACCCACTATCCAGGTAGAAC
TACATAGAATACGGACGAGTCAAAAGCAGGGGAGctgtcagggagggaga
tcgaAAGCATGAGCACAAAGATATAGAAGTCATCAGAAGAAGACGTGGTA
CCAGGACTGTAGTCAATAGAGTTGGCCCCTAAAAGAAAGTTACCAAGTTT
TTGGTGCGGTCATTAGAAAACACGCTAGAGAGCTGCATATAACGACAAGA
ATTTAGTCAGCTGGGACAGTTCGGAAATAGAAGATGGCATCGGCTCGCAG
ACGACCTACAGAGAATCTCAGGTGTGGCGAGCCCACTATAAGAAGGAAAA
TCCAAAGACCGGAAAACAAATGTAACCTTGCTT

Coding sequence (CDS) from alignment at CM002456.1:341908..344940+

>rna753 ID=rna753|Name=rna753|organism=Nannochloropsis gaditana|type=CDS|length=2061bp|location=Sequence derived from alignment at CM002456.1:341908..344940+ (Nannochloropsis gaditana)
ATGAGCGACCATGACATGTTTGCACCCATGGGATATCAAAGCGCCTCTGC
AGCTGCTACCATAGCGGCCTACACTTTCAACAAACAGCATGAAGAGCATC
AACAGCAAAATCAAATGCAATACGGAGGTATTACACACGTCGTGGGCAAT
TCCCAAGCAACGGCCGGGCCGGCCTCTTTCGGTGGAGTGAGCAAGAGTAC
AGCGGGAAAGCCAACAATGTCCCATTTAGAAAGTTTATCCGACCAACATC
GACACGAACAATATCAAAACCTGCAGTCCTTGCTAACCACCCGGAGCTCC
GGTAGTGCTCAACGCGCGGGGAACTTGAGCAGCAGTACACAATGCAATAA
CCAAGGCCAAGGAACTCTCATGACAGCCTCCCCCCACCATCTTCCCTTGc
atttgccttcctccgccgggcAACAACACTCTGGCGCCATGCACTCCCAA
GAGTACTCGTCCCTTTCATCgggtcctccgcccttccctccctttcatcc
GCTCTCAACATCCTCGGATGGATACCAGCACAATCAAGCCGGGGCCTCCG
CGAatgccctccccgtccccccctctgTAACGCCCAAGCAACGGCAATAC
TATCTGAAACGGGCCCTGGAATCCTTCACGAAAGAGCACCTGACCACCCT
CCTCTGCGACATTGCCAACAACATGGGCGGAAGCGTTTTCGAGGAGGCCT
ACGAGCGTGCCTGCCTGGACCTGGCGAACCGGAAGGTCTTCGTCCGAGGA
ATCGCCTGGGGGACCACCAGCGATTCCCTCGGCGAGGCTCTCTCCGTCTT
TGGGACGAtccaggaggcggccgtgatCTGCGACCGTGTCACTGGAAAGA
GTAAGGGCTACGCCTTTGTGACCTTCGACCATGGGGAGTCCGCCTTCCGC
CTCTTGGAGTTACCCTACATCTCCATAGACGGCCGCAACGTCCAGTGCTT
CCTGGCCTCGCAGCGGGGCTCGGGCAGTGGTGCCAGCGGAGACACGCATG
GGCCACAGACTAGCCACGGACATCCAACTCCCTTCGGAGGCAAGGACGCC
GGTCCCCACCACAATTACCACAACCCCCAGCCGCCCTCCCGATACACCCC
CCCCTACCGGCCTCAGTACACAGCCCCGCCTCCGCAGCCCACGCCGCAAC
CGCGCCAATACCcggccccttccaccgcgGTGACTTCCTACCATGTGAAC
ATGCACCATTCTGCGGGACCCCCCACGTCCGTGCCGTCCTTTGCTCCCGG
CGCCATGCACGTGGGCGTAGGCGCCGGAGGGCCGGACATGGCCAGACCCC
ACTTCCACAAGGCGGACTCGGTCGAGAGTCTCAAAGATGAGAAGATTGTG
GGCGGATCATCTGACAACGTCGGCCAAGGGGAAGCGAAGCCGGTTGGGGT
CCGTGAAAATCCAGCAATTACCCCGACGGAAAGCCGACGTCGGTCTTTTC
CCGGACCCGAGTTGACCCAGATCCAAGGCGGAAGGCACGGCGTGATTGGC
ATTCCTCCGGGCCGCGAAGGCCTCGCTGAGGTCGGGGACGCCCGTGGCAa
tgcctctgcctccacgtCACCGCCAGGGCCGGGGGAAttcagcagcacca
gcagcaacagcaacactAGTAGCAAGCACGCGAGGCAAGTTGTGGTGCGA
GGGCTGGGGATGGACTCCAATCAGGAGCTTTTGGCGCGCTTGTTCCTGGG
TGAGGGTGAATTGGAAGACGTGCTGTTCTTGGGCAATCCCACCACACACG
CGCCGATGGGGGCTGCACTTATTACTTTCTGGGAGGCGCGTTCGGCAGCA
TTGGCCTTGCTGACGCCATTTCGAAGCCTGCCGTGCGGGAGAGTCTGCGA
GGTGATGtcggtgcctcctcctccctctgtctcgtccgtatcctcttcct
catcgacGGTCGGGGAAGAGAATGACGTGAAGAATCACGAATGCTTCCTA
TCTCAGTCGGCGCAGCAAGCCCAAGCAACGCAGGAACAGGAGGGAAATGT
TTACAATGTAGGAGAATCAGGGCTGCCACAgatgaaagaaggaggaaaat
ggcacCAGTAG

Synonyms

Publications