EWM29919.1, cds753 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29919.1 vs. NCBI_GenBank
Match: gi|585112502|gb|EWM29919.1| (polyadenylate-binding cytoplasmic and nuclear-like protein [Nannochloropsis gaditana]) HSP 1 Score: 1407.12 bits (3641), Expect = 0.000e+0 Identity = 686/686 (100.00%), Postives = 686/686 (100.00%), Query Frame = 0
Query: 1 MSDHDMFAPMGYQSASAAATIAAYTFNKQHEEHQQQNQMQYGGITHVVGNSQATAGPASFGGVSKSTAGKPTMSHLESLSDQHRHEQYQNLQSLLTTRSSGSAQRAGNLSSSTQCNNQGQGTLMTASPHHLPLHLPSSAGQQHSGAMHSQEYSSLSSGPPPFPPFHPLSTSSDGYQHNQAGASANALPVPPSVTPKQRQYYLKRALESFTKEHLTTLLCDIANNMGGSVFEEAYERACLDLANRKVFVRGIAWGTTSDSLGEALSVFGTIQEAAVICDRVTGKSKGYAFVTFDHGESAFRLLELPYISIDGRNVQCFLASQRGSGSGASGDTHGPQTSHGHPTPFGGKDAGPHHNYHNPQPPSRYTPPYRPQYTAPPPQPTPQPRQYPAPSTAVTSYHVNMHHSAGPPTSVPSFAPGAMHVGVGAGGPDMARPHFHKADSVESLKDEKIVGGSSDNVGQGEAKPVGVRENPAITPTESRRRSFPGPELTQIQGGRHGVIGIPPGREGLAEVGDARGNASASTSPPGPGEFSSTSSNSNTSSKHARQVVVRGLGMDSNQELLARLFLGEGELEDVLFLGNPTTHAPMGAALITFWEARSAALALLTPFRSLPCGRVCEVMSVPPPPSVSSVSSSSSTVGEENDVKNHECFLSQSAQQAQATQEQEGNVYNVGESGLPQMKEGGKWHQ 686
MSDHDMFAPMGYQSASAAATIAAYTFNKQHEEHQQQNQMQYGGITHVVGNSQATAGPASFGGVSKSTAGKPTMSHLESLSDQHRHEQYQNLQSLLTTRSSGSAQRAGNLSSSTQCNNQGQGTLMTASPHHLPLHLPSSAGQQHSGAMHSQEYSSLSSGPPPFPPFHPLSTSSDGYQHNQAGASANALPVPPSVTPKQRQYYLKRALESFTKEHLTTLLCDIANNMGGSVFEEAYERACLDLANRKVFVRGIAWGTTSDSLGEALSVFGTIQEAAVICDRVTGKSKGYAFVTFDHGESAFRLLELPYISIDGRNVQCFLASQRGSGSGASGDTHGPQTSHGHPTPFGGKDAGPHHNYHNPQPPSRYTPPYRPQYTAPPPQPTPQPRQYPAPSTAVTSYHVNMHHSAGPPTSVPSFAPGAMHVGVGAGGPDMARPHFHKADSVESLKDEKIVGGSSDNVGQGEAKPVGVRENPAITPTESRRRSFPGPELTQIQGGRHGVIGIPPGREGLAEVGDARGNASASTSPPGPGEFSSTSSNSNTSSKHARQVVVRGLGMDSNQELLARLFLGEGELEDVLFLGNPTTHAPMGAALITFWEARSAALALLTPFRSLPCGRVCEVMSVPPPPSVSSVSSSSSTVGEENDVKNHECFLSQSAQQAQATQEQEGNVYNVGESGLPQMKEGGKWHQ
Sbjct: 1 MSDHDMFAPMGYQSASAAATIAAYTFNKQHEEHQQQNQMQYGGITHVVGNSQATAGPASFGGVSKSTAGKPTMSHLESLSDQHRHEQYQNLQSLLTTRSSGSAQRAGNLSSSTQCNNQGQGTLMTASPHHLPLHLPSSAGQQHSGAMHSQEYSSLSSGPPPFPPFHPLSTSSDGYQHNQAGASANALPVPPSVTPKQRQYYLKRALESFTKEHLTTLLCDIANNMGGSVFEEAYERACLDLANRKVFVRGIAWGTTSDSLGEALSVFGTIQEAAVICDRVTGKSKGYAFVTFDHGESAFRLLELPYISIDGRNVQCFLASQRGSGSGASGDTHGPQTSHGHPTPFGGKDAGPHHNYHNPQPPSRYTPPYRPQYTAPPPQPTPQPRQYPAPSTAVTSYHVNMHHSAGPPTSVPSFAPGAMHVGVGAGGPDMARPHFHKADSVESLKDEKIVGGSSDNVGQGEAKPVGVRENPAITPTESRRRSFPGPELTQIQGGRHGVIGIPPGREGLAEVGDARGNASASTSPPGPGEFSSTSSNSNTSSKHARQVVVRGLGMDSNQELLARLFLGEGELEDVLFLGNPTTHAPMGAALITFWEARSAALALLTPFRSLPCGRVCEVMSVPPPPSVSSVSSSSSTVGEENDVKNHECFLSQSAQQAQATQEQEGNVYNVGESGLPQMKEGGKWHQ 686
BLAST of EWM29919.1 vs. NCBI_GenBank
Match: gi|302788860|ref|XP_002976199.1| (hypothetical protein SELMODRAFT_151090 [Selaginella moellendorffii] >gi|300156475|gb|EFJ23104.1| hypothetical protein SELMODRAFT_151090 [Selaginella moellendorffii]) HSP 1 Score: 122.865 bits (307), Expect = 6.881e-27 Identity = 65/130 (50.00%), Postives = 83/130 (63.85%), Query Frame = 0
Query: 202 LKRALESFTKEHLTTLLCDIANNMGGSVFEEAYERACLDLANRKVFVRGIAWGTTSDSLGEALSVFGTIQEAAVICDRVTGKSKGYAFVTFDHGESAFRLLELPYISIDGRNVQCFLASQRGSGSGASGD 331
LKR LE +KE L LL D A + +V ++ E A D A+RK+FVRG+AW TTS L +A FG I+E AVI D+ TGKS+G+ F+TF H +SA R L+ P +IDGR C LAS SGSG + D
Sbjct: 39 LKRLLEPLSKEQLVALLTD-AGSQYSAVADDIREVASKDPAHRKLFVRGLAWETTSQDLRDAFEQFGEIEEGAVIIDKATGKSRGFGFITFKHMDSAQRALKEPSKTIDGRITVCNLASVGTSGSGGTND 167 HSP 2 Score: 70.8626 bits (172), Expect = 1.479e-9 Identity = 46/141 (32.62%), Postives = 73/141 (51.77%), Query Frame = 0
Query: 240 DLANRKVFVRGIAWGTTSDSLGEALSVFGTIQEAAVICDRVTGKSKGYAFVTFDHGESAFRLLELPYISIDGRNVQCFLAS--QRGSGSGASGDTHGPQTSHGHPTPFGGKDAGPHHNYHNPQPPSRYTPPYRPQYTAPPP 378
D A RK+++ G+++ T++++L S +G I+E AV D+ T KS+G+AFVT+ E+A ++ P +I+GR+V LA+ Q+ S + GPQ A P +N NP P+ Y PPP
Sbjct: 167 DQAQRKLYIGGLSYETSNETLLNIFSKYGEIEEGAVAYDKNTNKSRGFAFVTYKTVEAARNAIDDPNKTIEGRHVIVKLAAEGQKEKAPQVSAPSQGPQ-------------AQPGYNVVNPNIPA---------YARPPP 285
BLAST of EWM29919.1 vs. NCBI_GenBank
Match: gi|302754726|ref|XP_002960787.1| (hypothetical protein SELMODRAFT_163608 [Selaginella moellendorffii] >gi|300171726|gb|EFJ38326.1| hypothetical protein SELMODRAFT_163608 [Selaginella moellendorffii]) HSP 1 Score: 113.62 bits (283), Expect = 1.022e-23 Identity = 61/130 (46.92%), Postives = 81/130 (62.31%), Query Frame = 0
Query: 202 LKRALESFTKEHLTTLLCDIANNMGGSVFEEAYERACLDLANRKVFVRGIAWGTTSDSLGEALSVFGTIQEAAVICDRVTGKSKGYAFVTFDHGESAFRLLELPYISIDGRNVQCFLASQRGSGSGASGD 331
LKR LE +KE L LL D A + +V ++ + A D A+RK+FVRG+AW TTS +L +A +G I+E AVI D+ TGKS+G+ F+TF H +SA R L+ P +IDGR C LAS S S D
Sbjct: 30 LKRLLEPLSKEQLVALLID-AGSQYPAVADDIRDVASKDPAHRKLFVRGLAWETTSQALRDAFQHYGEIEEGAVITDKATGKSRGFGFITFKHMDSAQRALKEPSKTIDGRITVCNLASVGSSAGAGSAD 158 HSP 2 Score: 68.5514 bits (166), Expect = 9.694e-9 Identity = 54/184 (29.35%), Postives = 88/184 (47.83%), Query Frame = 0
Query: 240 DLANRKVFVRGIAWGTTSDSLGEALSVFGTIQEAAVICDRVTGKSKGYAFVTFDHGESAFRLLELPYISIDGRNVQCFLAS----QRGSGSGASGDTHGPQTSHGH------------PTPFG----------------GKDAGPHHNYHNPQP--PSRYTPPYRP-QYTAPPPQPTPQPRQYP 388
D A RK+++ G+++ T++++L S +G I+E AV D+ T KS+G+AF+T+ E+A + ++ P +I+GR+V LA+ ++ ++ + GPQ G+ PT G + P + NPQ + P Y P QY A PTPQP Q P
Sbjct: 158 DQAQRKLYIGGLSYETSNETLLNIFSQYGEIEEGAVAYDKNTNKSRGFAFITYKSVEAARKAIDDPNKTIEGRHVIVKLAAEGQKEKAVSQSSAQNQGGPQVQAGYSVINPNLPAFARPTVAGAGTPALGFSPYTPGLPAYTSQPAYATSNPQYGGVTAAMPQYNPAQYAAQYGIPTPQPGQLP 341
BLAST of EWM29919.1 vs. NCBI_GenBank
Match: gi|1173934448|gb|OQR85791.1| (hypothetical protein ACHHYP_11364 [Achlya hypogyna]) HSP 1 Score: 110.923 bits (276), Expect = 1.099e-22 Identity = 57/125 (45.60%), Postives = 75/125 (60.00%), Query Frame = 0
Query: 202 LKRALESFTKEHLTTLLCDIANNMGGSVFEEAYERACLDLANRKVFVRGIAWGTTSDSLGEALSVFGTIQEAAVICDRVTGKSKGYAFVTFDHGESAFRLLELPYISIDGRNVQCFLASQRGSGS 326
L R LE F+++ + T+L A S+F E A D+A+RK+FVRG+AW TSD L + FG +Q A VI D+VTGKSKG+ FVTFD ESA L+ IDGR C LA+ + S +
Sbjct: 26 LTRLLEPFSRDQIVTILVSAAMQHD-SIFNEIKTMASADIAHRKIFVRGLAWEATSDKLRQHFVRFGPVQNATVIMDKVTGKSKGFGFVTFDDMESANAALKAQPHDIDGRKCPCNLAAAQDSSA 149 HSP 2 Score: 89.3521 bits (220), Expect = 1.572e-15 Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 0
Query: 240 DLANRKVFVRGIAWGTTSDSLGEALSVFGTIQEAAVICDRVTGKSKGYAFVTFDHGESAFRLLELPYISIDGRNVQCFLASQRGSGSG 327
D A+RK+FVRG+ W T +D++ +G I++ A+ DR TGKSKGY F+ + H +A R L P IDGRN C LASQ G+G
Sbjct: 206 DEADRKLFVRGLHWDTQADAVTAEFQKYGDIEDVAITKDRQTGKSKGYGFIVYRHQMAAKRALAQPMKIIDGRNTHCNLASQPQRGNG 293
BLAST of EWM29919.1 vs. NCBI_GenBank
Match: gi|672198136|ref|XP_008777247.1| (PREDICTED: UBP1-associated protein 2C-like [Phoenix dactylifera]) HSP 1 Score: 108.612 bits (270), Expect = 3.779e-22 Identity = 58/131 (44.27%), Postives = 77/131 (58.78%), Query Frame = 0
Query: 202 LKRALESFTKEHLTTLLCDIANNMGGSVFEEAYERACLDLANRKVFVRGIAWGTTSDSLGEALSVFGTIQEAAVICDRVTGKSKGYAFVTFDHGESAFRLLELPYISIDGRNVQCFLASQRGSGSGASGDT 332
L+ L+ K+ L LL + +V EE AC D +RK+FVRG+AW TTS++L A S+ G I+E AVI D+ TGKS+GY F+TF H ESA + L+ P IDGR C LA + S + S D
Sbjct: 26 LRNLLDPLRKDQLVDLLVKLGTQYS-TVAEEIKGVACSDPVHRKLFVRGLAWETTSETLCAAFSMHGEIEEGAVIFDKATGKSRGYGFITFRHMESAQKALQEPSKMIDGRLAVCNLACESLSSASVSTDV 155
BLAST of EWM29919.1 vs. NCBI_GenBank
Match: gi|302769522|ref|XP_002968180.1| (hypothetical protein SELMODRAFT_169811 [Selaginella moellendorffii] >gi|300163824|gb|EFJ30434.1| hypothetical protein SELMODRAFT_169811 [Selaginella moellendorffii]) HSP 1 Score: 105.916 bits (263), Expect = 1.540e-21 Identity = 55/114 (48.25%), Postives = 71/114 (62.28%), Query Frame = 0
Query: 218 LCDIANNMGGSVFEEAYERACLDLANRKVFVRGIAWGTTSDSLGEALSVFGTIQEAAVICDRVTGKSKGYAFVTFDHGESAFRLLELPYISIDGRNVQCFLASQRGSGSGASGD 331
C + +V ++ E A D A+RK+FVRG+AW TTS L EA FG I+E AVI D+ TGKS+G+ F+TF H +SA R L+ P +IDGR C LAS SGSG + D
Sbjct: 7 FCICRGSQYSAVADDIREVASKDPAHRKLFVRGLAWETTSQDLREAFEQFGEIEEGAVIIDKATGKSRGFGFITFKHMDSAQRALKEPSKTIDGRITVCNLASVGTSGSGGTND 120 HSP 2 Score: 69.3218 bits (168), Expect = 3.174e-9 Identity = 46/139 (33.09%), Postives = 72/139 (51.80%), Query Frame = 0
Query: 240 DLANRKVFVRGIAWGTTSDSLGEALSVFGTIQEAAVICDRVTGKSKGYAFVTFDHGESAFRLLELPYISIDGRNVQCFLASQRGSGSGASGDTHGPQTSHGHPTPFGGKDAGPHHNYHNPQPPSRYTPPYRPQYTAPPP 378
D A RK+++ G+++ T++++L S +G I+E AV D+ T KS+G+AFVT+ E+A ++ P +I+GR+V LA++ PQ S P G A P +N NP P+ Y PPP
Sbjct: 120 DQAQRKLYIGGLSYETSNETLLNIFSKYGEIEEGAVAYDKNTNKSRGFAFVTYKTVEAARNAIDDPNKTIEGRHVIVKLAAE-------GQKEKAPQVS----APSQGPQAQPGYNVVNPNIPA---------YARPPP 238
BLAST of EWM29919.1 vs. NCBI_GenBank
Match: gi|1035910987|gb|OAY40581.1| (hypothetical protein MANES_09G033200 [Manihot esculenta]) HSP 1 Score: 106.686 bits (265), Expect = 1.972e-21 Identity = 59/140 (42.14%), Postives = 80/140 (57.14%), Query Frame = 0
Query: 193 VTPKQRQYYLKRALESFTKEHLTTLLCDIANNMGGSVFEEAYERACLDLANRKVFVRGIAWGTTSDSLGEALSVFGTIQEAAVICDRVTGKSKGYAFVTFDHGESAFRLLELPYISIDGRNVQCFLASQRGSGSGASGDT 332
++P Q Q L+ L+ K L LL + + S+ EE A D +RK+FVRG+AW TTS++L A V G I+E AVI D+ TGKS+GY F+T+ H ES L P IDGR C LA + SG+ A+ D+
Sbjct: 18 ISPTQEQ--LRSLLDPLNKSQLVDLLSRLGSQYP-SIAEEIKNVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHIESTQSALAAPSKLIDGRMAVCNLACEGLSGATATSDS 154
BLAST of EWM29919.1 vs. NCBI_GenBank
Match: gi|673031670|ref|XP_008869796.1| (hypothetical protein H310_06482 [Aphanomyces invadans] >gi|673031672|ref|XP_008869797.1| hypothetical protein, variant 1 [Aphanomyces invadans] >gi|673031674|ref|XP_008869798.1| hypothetical protein, variant 2 [Aphanomyces invadans] >gi|574474947|gb|ETW01948.1| hypothetical protein H310_06482 [Aphanomyces invadans] >gi|574474948|gb|ETW01949.1| hypothetical protein, variant 1 [Aphanomyces invadans] >gi|574474949|gb|ETW01950.1| hypothetical protein, variant 2 [Aphanomyces invadans]) HSP 1 Score: 107.842 bits (268), Expect = 2.686e-21 Identity = 50/119 (42.02%), Postives = 75/119 (63.03%), Query Frame = 0
Query: 202 LKRALESFTKEHLTTLLCDIANNMGGSVFEEAYERACLDLANRKVFVRGIAWGTTSDSLGEALSVFGTIQEAAVICDRVTGKSKGYAFVTFDHGESAFRLLELPYISIDGRNVQCFLAS 320
+ R L FT+E + ++L A S++ E A +D+A+RK+FVRG++W TT+ ++ + FG I+E VI DR TGKSKG+ FVT++ ESA R+L + + IDGR C LA+
Sbjct: 81 IARLLSPFTREQIVSILISAALQHK-SIYNEIRSMASVDVAHRKLFVRGLSWDTTTATMQQVFESFGKIEECTVIMDRNTGKSKGFGFVTYEDMESAERVLSVQPLEIDGRKCACNLAA 198 HSP 2 Score: 89.7373 bits (221), Expect = 2.816e-15 Identity = 58/161 (36.02%), Postives = 78/161 (48.45%), Query Frame = 0
Query: 240 DLANRKVFVRGIAWGTTSDSLGEALSVFGTIQEAAVICDRVTGKSKGYAFVTFDHGESAFRLLELPYISIDGRNVQCFLASQRGSGSGASGDTHGPQTSHGHPTPFGGKDAGPHHNYHNPQPPSRYTPPYRPQYTAPPPQPTPQP---RQYPAPSTAVTSY 397
D ++RK+F+RG+ + TT++S+ +G ++E + DR TGKSKGYAF+ + H A R L P IDGR C LASQ+ S +GA +GG H P P + PYRP A PQ P Q PA +TA Y
Sbjct: 253 DESDRKLFLRGLDYNTTTESVTVEFQKYGDLEEVTIAKDRATGKSKGYAFIVYRHMGGAKRALAQPQKFIDGRATHCNLASQKNSNAGAQ---------------YGG---------HTPAPTQQ---PYRPPAAAAVPQVIAYPPHMYQQPAAATAYMGY 386
BLAST of EWM29919.1 vs. NCBI_GenBank
Match: gi|168024548|ref|XP_001764798.1| (predicted protein [Physcomitrella patens] >gi|162684092|gb|EDQ70497.1| predicted protein, partial [Physcomitrella patens]) HSP 1 Score: 102.834 bits (255), Expect = 6.224e-21 Identity = 60/135 (44.44%), Postives = 79/135 (58.52%), Query Frame = 0
Query: 186 ALPVPPSVTPKQRQYYLKRALESFTKEHLTTLLCDIANNMGGSVFEEAYERACLDLANRKVFVRGIAWGTTSDSLGEALSVFGTIQEAAVICDRVTGKSKGYAFVTFDHGESAFRLLELPYISIDGRNVQCFLAS 320
A VP V K+ +K+ +E FTKE L LL + A N V E + A D +RK+FVRG+ W TT+++L S FG ++E AVI D+ TGKS+G+ FVTF H + A R L+ P IDGR C LAS
Sbjct: 11 AASVPTFVITKED---VKKLVEPFTKEQLMDLLENAALNHA-DVLHEIRKLADKDPGHRKIFVRGLGWDTTTETLKTVFSQFGEVEEGAVIMDKATGKSRGFGFVTFKHMDGAQRSLKEPSKRIDGRMTVCQLAS 141
BLAST of EWM29919.1 vs. NCBI_GenBank
Match: gi|449437591|ref|XP_004136575.1| (PREDICTED: UBP1-associated protein 2C-like [Cucumis sativus] >gi|700204181|gb|KGN59314.1| hypothetical protein Csa_3G809410 [Cucumis sativus]) HSP 1 Score: 104.375 bits (259), Expect = 1.132e-20 Identity = 58/131 (44.27%), Postives = 76/131 (58.02%), Query Frame = 0
Query: 201 YLKRALESFTKEHLTTLLCDIANNMGGSVFEEAYERACLDLANRKVFVRGIAWGTTSDSLGEALSVFGTIQEAAVICDRVTGKSKGYAFVTFDHGESAFRLLELPYISIDGRNVQCFLASQRGSGSGASGD 331
+L+ LE K L LL + + S+ EE A D NRK+FVRG+AW TTS++L A SV G I+E AVI D+ TGKS+GY F+T+ H ES L+ P I+GR C LA + SGS + D
Sbjct: 23 HLRTLLEPLPKPQLVDLLARLGSQYP-SIAEEIKSVASADPVNRKLFVRGLAWNTTSETLCAAFSVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTKAALKAPSKIIEGRMAVCNLACEGLSGSSTTPD 152 The following BLAST results are available for this feature:
BLAST of EWM29919.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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