rna746, rna746 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna746
Unique Name	rna746
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	612
Alignment location	CM002456.1:319201..321213 -

Link to JBrowse

Properties


Property Name	Value
Product	Tetratricopeptide-like helical
Orig transcript id	gnl\|cribi\|Naga_100035g3.3391.mrna
Orig protein id	gnl\|cribi\|Naga_100035g3.3391
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:319201..321213 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100035g3	gene716	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna746	rna746-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29927.1	cds746	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:319201..321213-
coding sequence from alignment at CM002456.1:319201..321213-

mRNA sequence

>rna746 ID=rna746|Name=rna746|organism=Nannochloropsis gaditana|type=mRNA|length=612bp
ATGATCCGGTCTTCACCTCCCTTTTTGCTGACCTTTGCATTCCTGTCCGT
CGCCTCGATATTGCAGCCTCCGCATCGCTTCGGCGCCGTTGCCCAGATGA
CCAAGCACCACGCCGCCAACCTACGAGACGCTGGAGTCATTCCTGACGTC
ATTGACAATTTTGATCCTCAAGTTCAGATTCGAATCACGTACGATTCCCT
CCTGATCACCCCCGGCGCCACCATCCTTCCTCGCCAGGGAGTGCACATGC
CTCAAGTAACCTTGGAGGGCTCACAGCCCGGGCACCTCTATACTCTCTTC
ATGTCGGACCCTGACGCCCCATCTCCAGAGCACCCATCACACCGGGAATA
CCTGCACTGGATCGTGAGCAACATCCCCGGGGGAGCCAACGACATTGCCG
AGGGGACGGAGGTCGTGCCGTACGCCCCTCCTACACCTCCTCAGGGCACC
CATCGCTACGTCCTCACGGTCATGGAGCAGCCTGGCACCAACCCCATGAC
AGTGAGGCCGCCTGCTCAGCGCGGTGGCTTTCGAACGCGGACGTTTGGGA
AAGAGGCAGGGATGGACGTGGTGGGTGCCACGTTCTTTAAGGCGGCGCAC
CAGTCAAAGTAG

protein sequence of rna746

>rna746-protein ID=rna746-protein|Name=rna746|organism=Nannochloropsis gaditana|type=polypeptide|length=537bp
MRPPVFLQILSLLGAISSASRLCHAAMTAPPSSSGARPTPPSPSSLGSSF
PSPLKEGGIDAVPWGEIFSALQDSNLSPEDMRDLQAYMLDRIKTQRAAQA
AVEEQKQRMKRRRIRRGELEGPGLATGTKARERGAEEEGGCIPKEEMEAA
SATAIDGSIEGAIREDKERREVENEEDEEEKALSKATAAAAAAAFDWKSS
LESFQTQSQVIARSVALRKSGNERLAAGDVDEAVSLYEEALAVLERGTVV
ETGRTRVCAYSCRLNIAVGVAKRGEHTKAVEIYTTLLRVLDEGRDEAGGR
EERAVRWQCLTKRARMMRRLGRVEEAFADLVEANRLRPSDRKVAAELEEM
GGTPSPLPPSPPPSLFPGAAASPLDTLLGGEGGGNMLGNIFGSIGSGSGM
PGMLEGGGDGGGGNVLEGLMGKYVASMGTRLLDVLEQPETLNTVCVLLKK
LEFDYLKSLAVTANLPVSDATIRWVHTKAMGVEPEEIRRWIGRGKWARAA
YVSTKRTWASVQPLVRPVRLLVMYALVLRWIGACVGV

mRNA from alignment at CM002456.1:319201..321213-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna746 ID=rna746|Name=rna746|organism=Nannochloropsis gaditana|type=mRNA|length=2013bp|location=Sequence derived from alignment at CM002456.1:319201..321213- (Nannochloropsis gaditana)
AACAGAGGGCTTTTGTGGAATTTTAGGAGACAGTGTGTAACAATTTTGCT
GGGTAAGGTGTTCAAGGGGGGTCGAACAAGCTTTTCGTGGCATTTGCTTC
GAAAGCAATATCATGCGTCCTCCCGTCTTCCTTCAAATTCTGAGCCTTTT
GGGAGCGATCTCCTCCGCATCTAGATTATGCCATGCTGCTATGACCGCGC
CCCCGTCGTCCAGGTTCGTGATATGGGAGGCATCGCGGGGGGTTGCTTTT
GTCATATGGCCGCATCGAGATGCAAAACGTCACCGTCCTTTGTTACCTTT
ACTAATTTATCTTGACCATATTGGGCGCATCAAATAATCAGTGGTGCTAG
GCCAACGCCGCCCTCACCATCGTCGCTAGGGTCGTCATTTCCATCGCCTT
TAAAAGAAGGCGGTATCGATGCAGTGCCTTGGGGTGAAATTTTCAGCGCA
TTGCAGGACAGTAACTTAAGTCCTGAGGACATGCGCGATTTACAAGCATA
TATGCTGGACAGAATAAAGACCCAACGAGCAGCTCAAGCAGCCGTGGAGG
AGCAAAAACAAAGGATGAAGAGAAGGAGGATAAGAAGAGGCGAATTGGAG
GGTCCTGGCTTGGCAACAGGTACCAAGGCAAGGGAGCGGGGGGCGGAAGA
GGAAGGAGGTTGTATCCCGAAGGAGGAAATGGAAGCGGCGTCAGCGACGG
CGATAGACGGATCGATAGAGGGTGCCATAAGGGAGGATAAAGAAAGAAGA
GAAGTGGAAAATGAGGAAGATGAGGAAGAAAAAGCGTTATCAAAGGCCAC
TGCCGCCGCAGCTGCCGCTGCCTTTGATTGGAAAAGCAGCCTGGAGTCAT
TCCAGACGCAAAGCCAGGTAATCGCGCGCTCCGTAGCCCTGCGCAAATCG
GGGAATGAACGACTGGCCGCGGGGGACGTGGATGAGGCTGTGAGTCTCTA
TGAGGAGGCATTGGCGGTGCTGGAGCGAGGGACGGTTGTAGAAACGGGCC
GGACGCGGGTGTGTGCGTATTCCTGTCGGTTGAACATAGCCGTCGGGGTC
GCGAAACGGGGGGAGCACACCAAGGCGGTAGAGATCTACACCACTCTCTT
GCGCGTCCTGGATGAGGGGCGGGACGAGGCGGGCGGAAGGGAAGAGAGAG
CTGTCCGATGGCAGTGTCTGACTAAAAGAGCGCGAATGATGCGACGGTTG
GGGCGGGTGGAGGAAGCCTTTGCGGATTTGGTGGAGGCCAATCGTCTGAG
GCCCTCGGACCGAAAAGTGGCAGCCGAGTTGGAAGAAATGGGGGGCACCC
CGTCACCTCTCCCTCCTTCCCCTCCCCCCTCTCTCTTCCCAGGGGCCGCT
GCTTCTCCCCTCGACACGCTTTTGGGGGGGGAAGGAGGGGGAAACATGCT
TGGAAACATCTTCGGATCGATTGGAAGTGGGAGTGGAATGCCAGGAATGC
TGGAAGGAGGAGGGGATGGAGGGGGAGGAAACGTCTTGGAGGGGTTGATG
GGGAAGTATGTCGCCTCCATGGGCACGCGCCTCTTGGACGTGTTGGAACA
GCCCGAGACCCTGAACACGGTCTGTGTCCTGCTCAAGAAACTGGAGTTCG
ACTATCTGAAATCCTTGGCGGTGACGGCCAACCTCCCCGTCTCGGACGCG
ACCATCCGATGGGTGCATACCAAGGCGATGGGCGTGGAGCCCGAAGAAAT
CCGCCGGTGGATAGGGCGCGGGAAATGGGCCCGGGCCGCGTACGTGTCGA
CGAAACGGACATGGGCCAGCGTCCAGCCTCTCGTGCGGCCGGTACGCTTG
TTGGTGATGTACGCGCTGGTGTTGAGGTGGATAGGAGCATGTGTGGGAGT
CTGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGAGAGATTAGGAGAGGCC
TGTCGCCTCGCCGGAGATGTATAGTCGGAGCGCGCAATGCGTGAGTTGGA
TTCCAGGAAAGAAAAGCAAGGTTGCCTGGTATGCAAAAACGAACCAAAAC
CTTCTTAATCTGG

Coding sequence (CDS) from alignment at CM002456.1:319201..321213-

>rna746 ID=rna746|Name=rna746|organism=Nannochloropsis gaditana|type=CDS|length=3228bp|location=Sequence derived from alignment at CM002456.1:319201..321213- (Nannochloropsis gaditana)
TGGTGCTAGGCCAACGCCGCCCTCACCATCGTCGCTAGGGTCGTCATTTC
CATCGCCTTTAAAAGAAGGCGGTATCGATGCAGTGCCTTGGGGTGAAATT
TTCAGCGCATTGCAGGACAGTAACTTAAGTCCTGAGGACATGCGCGATTT
ACAAGCATATATGCTGGACAGAATAAAGACCCAACGAGCAGCTCAAGCAG
CCGTGGAGGAGCAAAAACAAAGGATGAAGAGAAGGAGGATAAGAAGAGGC
GAATTGGAGGGTCCTGGCTTGGCAACAGGTACCAAGGCAAGGGAGCGGGG
GGCGGAAGAGGAAGGAGGTTGTATCCCGAAGGAGGAAATGGAAGCGGCGT
CAGCGACGGCGATAGACGGATCGATAGAGGGTGCCATAAGGGAGGATAAA
GAAAGAAGAGAAGTGGAAAATGAGGAAGATGAGGAAGAAAAAGCGTTATC
AAAGGCCACTGCCGCCGCAGCTGCCGCTGCCTTTGATTGGAAAAGCAGCC
TGGAGTCATTCCAGACGCAAAGCCAGGTAATCGCGCGCTCCGTAGCCCTG
CGCAAATCGGGGAATGAACGACTGGCCGCGGGGGACGTGGATGAGGCTGT
GAGTCTCTATGAGGAGGCATTGGCGGTGCTGGAGCGAGGGACGGTTGTAG
AAACGGGCCGGACGCGGGTGTGTGCGTATTCCTGTCGGTTGAACATAGCC
GTCGGGGTCGCGAAACGGGGGGAGCACACCAAGGCGGTAGAGATCTACAC
CACTCTCTTGCGCGTCCTGGATGAGGGGCGGGACGAGGCGGGCGGAAGGG
AAGAGAGAGCTGTCCGATGGCAGTGTCTGACTAAAAGAGCGCGAATGATG
CGACGGTTGGGGCGGGTGGAGGAAGCCTTTGCGGATTTGGTGGAGGCCAA
TCGTCTGAGGCCCTCGGACCGAAAAGTGGCAGCCGAGTTGGAAGAAATGG
GGGGCACCCCGTCACCTCTCCCTCCTTCCCCTCCCCCCTCTCTCTTCCCA
GGGGCCGCTGCTTCTCCCCTCGACACGCTTTTGGGGGGGGAAGGAGGGGG
AAACATGCTTGGAAACATCTTCGGATCGATTGGAAGTGGGAGTGGAATGC
CAGGAATGCTGGAAGGAGGAGGGGATGGAGGGGGAGGAAACGTCTTGGAG
GGGTTGATGGGGAAGTATGTCGCCTCCATGGGCACGCGCCTCTTGGACGT
GTTGGAACAGCCCGAGACCCTGAACACGGTCTGTGTCCTGCTCAAGAAAC
TGGAGTTCGACTATCTGAAATCCTTGGCGGTGACGGCCAACCTCCCCGTC
TCGGACGCGACCATCCGATGGGTGCATACCAAGGCGATGGGCGTGGAGCC
CGAAGAAATCCGCCGGTGGATAGGGCGCGGGAAATGGGCCCGGGCCGCGT
ACGTGTCGACGAAACGGACATGGGCCAGCGTCCAGCCTCTCGTGCGGCCG
GTACGCTTGTTGGTGATGTACGCGCTGGTGTTGAGGTGGATAGGAGCATG
TGTGGGAGTCTGAATGCGTCCTCCCGTCTTCCTTCAAATTCTGAGCCTTT
TGGGAGCGATCTCCTCCGCATCTAGATTATGCCATGCTGCTATGACCGCG
CCCCCGTCGTCCAGTGGTGCTAGGCCAACGCCGCCCTCACCATCGTCGCT
AGGGTCGTCATTTCCATCGCCTTTAAAAGAAGGCGGTATCGATGCAGTGC
CTTGGGGTGAAATTTTCAGCGCATTGCAGGACAGTAACTTAAGTCCTGAG
GACATGCGCGATTTACAAGCATATATGCTGGACAGAATAAAGACCCAACG
AGCAGCTCAAGCAGCCGTGGAGGAGCAAAAACAAAGGATGAAGAGAAGGA
GGATAAGAAGAGGCGAATTGGAGGGTCCTGGCTTGGCAACAGGTACCAAG
GCAAGGGAGCGGGGGGCGGAAGAGGAAGGAGGTTGTATCCCGAAGGAGGA
AATGGAAGCGGCGTCAGCGACGGCGATAGACGGATCGATAGAGGGTGCCA
TAAGGGAGGATAAAGAAAGAAGAGAAGTGGAAAATGAGGAAGATGAGGAA
GAAAAAGCGTTATCAAAGGCCACTGCCGCCGCAGCTGCCGCTGCCTTTGA
TTGGAAAAGCAGCCTGGAGTCATTCCAGACGCAAAGCCAGGTAATCGCGC
GCTCCGTAGCCCTGCGCAAATCGGGGAATGAACGACTGGCCGCGGGGGAC
GTGGATGAGGCTGTGAGTCTCTATGAGGAGGCATTGGCGGTGCTGGAGCG
AGGGACGGTTGTAGAAACGGGCCGGACGCGGGTGTGTGCGTATTCCTGTC
GGTTGAACATAGCCGTCGGGGTCGCGAAACGGGGGGAGCACACCAAGGCG
GTAGAGATCTACACCACTCTCTTGCGCGTCCTGGATGAGGGGCGGGACGA
GGCGGGCGGAAGGGAAGAGAGAGCTGTCCGATGGCAGTGTCTGACTAAAA
GAGCGCGAATGATGCGACGGTTGGGGCGGGTGGAGGAAGCCTTTGCGGAT
TTGGTGGAGGCCAATCGTCTGAGGCCCTCGGACCGAAAAGTGGCAGCCGA
GTTGGAAGAAATGGGGGGCACCCCGTCACCTCTCCCTCCTTCCCCTCCCC
CCTCTCTCTTCCCAGGGGCCGCTGCTTCTCCCCTCGACACGCTTTTGGGG
GGGGAAGGAGGGGGAAACATGCTTGGAAACATCTTCGGATCGATTGGAAG
TGGGAGTGGAATGCCAGGAATGCTGGAAGGAGGAGGGGATGGAGGGGGAG
GAAACGTCTTGGAGGGGTTGATGGGGAAGTATGTCGCCTCCATGGGCACG
CGCCTCTTGGACGTGTTGGAACAGCCCGAGACCCTGAACACGGTCTGTGT
CCTGCTCAAGAAACTGGAGTTCGACTATCTGAAATCCTTGGCGGTGACGG
CCAACCTCCCCGTCTCGGACGCGACCATCCGATGGGTGCATACCAAGGCG
ATGGGCGTGGAGCCCGAAGAAATCCGCCGGTGGATAGGGCGCGGGAAATG
GGCCCGGGCCGCGTACGTGTCGACGAAACGGACATGGGCCAGCGTCCAGC
CTCTCGTGCGGCCGGTACGCTTGTTGGTGATGTACGCGCTGGTGTTGAGG
TGGATAGGAGCATGTGTGGGAGTCTGAATGCGTCCTCCCGTCTTCCTTCA
AATTCTGAGCCTTTTGGGAGCGATCTCCTCCGCATCTAGATTATGCCATG
CTGCTATGACCGCGCCCCCGTCGTCCAG

Synonyms

Publications