EWM29927.1, cds746 (CDS) Nannochloropsis gaditana

Overview
NameEWM29927.1
Unique Namecds746
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:321001..321101 -
Alignment locationCM002456.1:319360..320872 -

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Properties
Property NameValue
Protein idEWM29927.1
ProductTetratricopeptide-like helical
Orig transcript idgnl|cribi|Naga_100035g3.3391.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:321001..321101 -
CM002456.1supercontigCM002456.1:319360..320872 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Homology
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BLAST of EWM29927.1 vs. NCBI_GenBank
Match: gi|585112510|gb|EWM29927.1| (Tetratricopeptide-like helical [Nannochloropsis gaditana])

HSP 1 Score: 1075.08 bits (2779), Expect = 0.000e+0
Identity = 537/537 (100.00%), Postives = 537/537 (100.00%), Query Frame = 0 
Query:    1 MRPPVFLQILSLLGAISSASRLCHAAMTAPPSSSGARPTPPSPSSLGSSFPSPLKEGGIDAVPWGEIFSALQDSNLSPEDMRDLQAYMLDRIKTQRAAQAAVEEQKQRMKRRRIRRGELEGPGLATGTKARERGAEEEGGCIPKEEMEAASATAIDGSIEGAIREDKERREVENEEDEEEKALSKATAAAAAAAFDWKSSLESFQTQSQVIARSVALRKSGNERLAAGDVDEAVSLYEEALAVLERGTVVETGRTRVCAYSCRLNIAVGVAKRGEHTKAVEIYTTLLRVLDEGRDEAGGREERAVRWQCLTKRARMMRRLGRVEEAFADLVEANRLRPSDRKVAAELEEMGGTPSPLPPSPPPSLFPGAAASPLDTLLGGEGGGNMLGNIFGSIGSGSGMPGMLEGGGDGGGGNVLEGLMGKYVASMGTRLLDVLEQPETLNTVCVLLKKLEFDYLKSLAVTANLPVSDATIRWVHTKAMGVEPEEIRRWIGRGKWARAAYVSTKRTWASVQPLVRPVRLLVMYALVLRWIGACVGV 537
            MRPPVFLQILSLLGAISSASRLCHAAMTAPPSSSGARPTPPSPSSLGSSFPSPLKEGGIDAVPWGEIFSALQDSNLSPEDMRDLQAYMLDRIKTQRAAQAAVEEQKQRMKRRRIRRGELEGPGLATGTKARERGAEEEGGCIPKEEMEAASATAIDGSIEGAIREDKERREVENEEDEEEKALSKATAAAAAAAFDWKSSLESFQTQSQVIARSVALRKSGNERLAAGDVDEAVSLYEEALAVLERGTVVETGRTRVCAYSCRLNIAVGVAKRGEHTKAVEIYTTLLRVLDEGRDEAGGREERAVRWQCLTKRARMMRRLGRVEEAFADLVEANRLRPSDRKVAAELEEMGGTPSPLPPSPPPSLFPGAAASPLDTLLGGEGGGNMLGNIFGSIGSGSGMPGMLEGGGDGGGGNVLEGLMGKYVASMGTRLLDVLEQPETLNTVCVLLKKLEFDYLKSLAVTANLPVSDATIRWVHTKAMGVEPEEIRRWIGRGKWARAAYVSTKRTWASVQPLVRPVRLLVMYALVLRWIGACVGV
Sbjct:    1 MRPPVFLQILSLLGAISSASRLCHAAMTAPPSSSGARPTPPSPSSLGSSFPSPLKEGGIDAVPWGEIFSALQDSNLSPEDMRDLQAYMLDRIKTQRAAQAAVEEQKQRMKRRRIRRGELEGPGLATGTKARERGAEEEGGCIPKEEMEAASATAIDGSIEGAIREDKERREVENEEDEEEKALSKATAAAAAAAFDWKSSLESFQTQSQVIARSVALRKSGNERLAAGDVDEAVSLYEEALAVLERGTVVETGRTRVCAYSCRLNIAVGVAKRGEHTKAVEIYTTLLRVLDEGRDEAGGREERAVRWQCLTKRARMMRRLGRVEEAFADLVEANRLRPSDRKVAAELEEMGGTPSPLPPSPPPSLFPGAAASPLDTLLGGEGGGNMLGNIFGSIGSGSGMPGMLEGGGDGGGGNVLEGLMGKYVASMGTRLLDVLEQPETLNTVCVLLKKLEFDYLKSLAVTANLPVSDATIRWVHTKAMGVEPEEIRRWIGRGKWARAAYVSTKRTWASVQPLVRPVRLLVMYALVLRWIGACVGV 537
The following BLAST results are available for this feature:
BLAST of EWM29927.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585112510|gb|EWM29927.1|0.000e+0100.00Tetratricopeptide-like helical [Nannochloropsis ga... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna746rna746Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications