rna743, rna743 (mRNA) Nannochloropsis gaditana

Overview
Namerna743
Unique Namerna743
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1277
Alignment locationCM002456.1:307056..308319 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100661g2.3412.mrna
Orig protein idgnl|cribi|Naga_100661g2.3412
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:307056..308319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100661g2gene712Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna743rna743-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29931.1cds743Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna743 ID=rna743|Name=rna743|organism=Nannochloropsis gaditana|type=mRNA|length=1277bp
ATGGACAGCGTGGGGGCGGCCGCAGCGGCAGCCATAAATGACAAGAAAGC
TTCCATGCCAGAAGAGGAGGAAGGGAAGCGCTTGGGTCGCACCATCCTCG
ACATGCTCCGACAGCCCTCTGCCCATGCTTCCCTCGCTGCCTCCGTCGCT
TCCTCCTCCTGCACGCTCCAGCCACCTTTGGTCCCTTCAGGCTCCGAGGA
AGCGGGGAGGGAGGACAAGGGGGCGGGCGGTGTCCGATGGGAGACCCGCT
CCCTCCCCGAGATCGAAGAGCAGGCCCGGTCTAGATGGGCCGCCGTCGCT
CTCGCCCTGGAAGAGGGATCCATACTGCTGGAGGACGGCAGCAGGGTTCC
TGTCATCCGCTTGCCCCTTGGCGAGGATAGTCCCTCGACTCCCTGTCCTT
CTCCTCCCATTGCGTGTCGGTCGGCTCCGTCAATTGGGTTAGTAGATGCG
AGGGAGGTATTTACGACTTCCTCAAGTGAGGAGGAGGGAAGGGAGGGAAG
TTGGGTGGAGAGTGTGCAGAGATGGAGACGCGGCGGTACCTTCTTCGGTC
GAGATAGGCAGGACGGATGCAGAGGAGGGAGGGGGGGAAAAAAACGAGGA
GGGCGAGGATGGAAAGGAGGACGATGGAAGGAAGAGGGGAAAGGGCAGTC
AGAAGAGGGAAAAGGAAGAGACAGACAGGGCAATGGAACCCAGAGCATTG
CGTGTCGGGCGTAGTAAGGTCTCGACGTGATGGTCGGTGAAAGGGGTGAG
GGACGGTATGGTGCGACAAGGGCGAGGAGGAGCAAGCGGTGGTTATGTGA
CCTTCTGCATACTGCCGCGCTACGGCCACAAGAATGTGGGCGCAGGAATA
CATATCATGGGTCTGCTCGTATACGACCGGCTGGTTGGAAGACACACACA
GGTGTGATGACTTTCTGGGGGAACTTATTGATACGATGAGAAGGTCTTGC
CAGCCGAGGCCACAGAAGTATCAAGGGGAGCAGATTTCCTATGGGGGTTA
CACATGCATGTTAGGCTAACACAAAGCAATAAAGGAGCAAAGGGAGAGTA
ACAAAAGCAGAACACAACGAATGGAGAGGGGAGGTATATTTGTGTATCAG
TGCTTAGGGAGGACCGTATAAAACGCATTCGTTGCGGTGACCGCCCATCA
CTTATGTTGATAGAGAATAAAGCACAGTCCAAAGTCAAGCACAATTTAAA
GTCAAGCAATCGTTATAAGAAAAATCCTCTGTAGATGGCATATCGAAAGA
AAATCCTTTCTGGTGTATCAGGCAAAC
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protein sequence of rna743

>rna743-protein ID=rna743-protein|Name=rna743|organism=Nannochloropsis gaditana|type=polypeptide|length=163bp
MATLRRSMAWTSSCMRSVERGESSDKETAKQSPRTRFSRLSIHPPTDPGK
PTRRNGNTSRGPYPPQCRAMAGRRRPSKTLPRSTEKPPPCDTEADRSFAC
VMSGFCSTLGTTREEGLLRKLPNPKPSAIPRRIPARVRLYLLYASFKLSW
VVTTWKMAIRWKT
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mRNA from alignment at CM002456.1:307056..308319+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna743 ID=rna743|Name=rna743|organism=Nannochloropsis gaditana|type=mRNA|length=1264bp|location=Sequence derived from alignment at CM002456.1:307056..308319+ (Nannochloropsis gaditana)
GGTCACCGCCACTTGATTAGGCAGCAGCCGGGTGCCGTGGCGCGTGCATG
GCGACTCTGAGGCGGTCTATGGCTTGGACATCGTCATGCATGAGGTCGGT
CGAGCGTGGTGAGTCATCGGACAAGGTAAGAATACGCATGCTTTCTCTTT
GCTGTGTGTGGCGCCAGCAATGCAAGGGGCAagaaaaggcgagggcgagg
ggcaaaaaaagaaaaacgaGATGAACACGACGACTGGTCTGATTTCGAGA
CTCCCTCACACTCACATTAGGAAACGGCCAAACAGTCGCCGCGCACACGA
TTCTCGCGTCTATCGATCCATCCACCCACGGATCCCGGAAAGCCTACCAG
ACGGAACGGGAACACAAGCCGCGGCCCATACCCCCCACAATGCCGGGCCA
TGGCAGGGCGACGGCGGCCATCGAAGACCCTTCCCCGCAGCACAGAgaag
cctcctccatgtgATACAGAGGCTGACAGGTCCTTCGCCTGCGTGATGAG
TGGCTTCTGTTCCACCCTGGGGACAACACGTGAGGAGGGTTTACTGCGCA
AGCTCCCCAATCCAAAGCCCTCCGCCATACCCCGTAGAATACCTGCGAGG
GTCAGGCTCTACCTACTTTATGCGTCGTTTAAACTCTCCTGGGTTGTCAC
GACATGGAAAATGGCCATTCGTTGGAAGACATGAACGCACTCCCAGGTGA
GGATGATGTTGGAAGCGAGGGTCAGGACAAAAAATGCTTCCTGTAGGTAT
GTGGATCGGggtgcctcctcccagcttgTCAATCCTTGCCAGGAGGACAG
TTGATCTTCCTCTAGAAGTCAAGGAAGATGGCACCCCTTGTACTCTACCG
TGCGATTGCTGAAGATCCGTCGCTCAACTTGTCATGAGCTTGCATGTGCA
CAAAAAATCATGACTCTGCCAGGTCTTGGCCTAGGTCGGGGACTAAGATT
TTCCTCCGGGTCTCATGATCGTGTTGAGCGTCAAAAGGGACAATTTCCGA
CCCGAACTGCGGGGCCATAGGATGTTCACGGGTGGAAAGCAGAACAAGTG
CAGTTTGTTTTTCATGTGATGCCATAAAGTGTAATGAGCGGGCATGAAAA
CGGTGAAGTTGTACATGAAACATCCTAGACGAGAAAAATACGATACTTTC
AACGACTAAGGTATTGGAGAAGGGGTCTCCCTCGGCACGGAAGCCCCAGG
CCcggcgatggggaagaaaaaaagacgaGCAGCTGTTTGCCTCAACGGAA
TGTGAACACGAGCG
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Coding sequence (CDS) from alignment at CM002456.1:307056..308319+

>rna743 ID=rna743|Name=rna743|organism=Nannochloropsis gaditana|type=CDS|length=984bp|location=Sequence derived from alignment at CM002456.1:307056..308319+ (Nannochloropsis gaditana)
ATGGCGACTCTGAGGCGGTCTATGGCTTGGACATCGTCATGCATGAGGTC
GGTCGAGCGTGGTGAGTCATCGGACAAGGAAACGGCCAAACAGTCGCCGC
GCACACGATTCTCGCGTCTATCGATCCATCCACCCACGGATCCCGGAAAG
CCTACCAGACGGAACGGGAACACAAGCCGCGGCCCATACCCCCCACAATG
CCGGGCCATGGCAGGGCGACGGCGGCCATCGAAGACCCTTCCCCGCAGCA
CAGAgaagcctcctccatgtgATACAGAGGCTGACAGGTCCTTCGCCTGC
GTGATGAGTGGCTTCTGTTCCACCCTGGGGACAACACGTGAGGAGGGTTT
ACTGCGCAAGCTCCCCAATCCAAAGCCCTCCGCCATACCCCGTAGAATAC
CTGCGAGGGTCAGGCTCTACCTACTTTATGCGTCGTTTAAACTCTCCTGG
GTTGTCACGACATGGAAAATGGCCATTCGTTGGAAGACATGAATGGCGAC
TCTGAGGCGGTCTATGGCTTGGACATCGTCATGCATGAGGTCGGTCGAGC
GTGGTGAGTCATCGGACAAGGAAACGGCCAAACAGTCGCCGCGCACACGA
TTCTCGCGTCTATCGATCCATCCACCCACGGATCCCGGAAAGCCTACCAG
ACGGAACGGGAACACAAGCCGCGGCCCATACCCCCCACAATGCCGGGCCA
TGGCAGGGCGACGGCGGCCATCGAAGACCCTTCCCCGCAGCACAGAgaag
cctcctccatgtgATACAGAGGCTGACAGGTCCTTCGCCTGCGTGATGAG
TGGCTTCTGTTCCACCCTGGGGACAACACGTGAGGAGGGTTTACTGCGCA
AGCTCCCCAATCCAAAGCCCTCCGCCATACCCCGTAGAATACCTGCGAGG
GTCAGGCTCTACCTACTTTATGCGTCGTTTAAACTCTCCTGGGTTGTCAC
GACATGGAAAATGGCCATTCGTTGGAAGACATGA
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Synonyms
Publications