EWM29932.1, cds739 (CDS) Nannochloropsis gaditana

Overview
NameEWM29932.1
Unique Namecds739
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:294529..295023 +
Alignment locationCM002456.1:295105..296127 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29932.1
Productdna primase small subunit
Orig transcript idgnl|cribi|Naga_100351g4.7473.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:294529..295023 +
CM002456.1supercontigCM002456.1:295105..296127 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
GO:0006269DNA replication, synthesis of RNA primer
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003896DNA primase activity
Vocabulary: INTERPRO
TermDefinition
IPR014052DNA_primase_ssu_euk/arc
IPR002755DNA_primase_S
Homology
BLAST of EWM29932.1 vs. NCBI_GenBank
Match: gi|585112518|gb|EWM29932.1| (dna primase small subunit [Nannochloropsis gaditana])

HSP 1 Score: 1053.89 bits (2724), Expect = 0.000e+0
Identity = 505/505 (100.00%), Postives = 505/505 (100.00%), Query Frame = 0
Query:    1 MSFLLFRASFLSRSSFSNRPIHLNAKNTLCTSTCGRLSAAGNRENMEIAPSNTNKVSVAAAAINDQEFSPELLRFFYNRLFPYQPMFKWLSYGNDPDNDAAHIVRDYFACREFSFTINDDIYIRYQSFRDASEMESAIQKKQPHKIDIGAVFTLPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRSCCTGAKICPKCWVFMTMAVKVVDTALREDFGFRYILWVYSGRRGVHCWVCDPNARALSNDGRSAVVEYLSLPRGNEKSKGKNGGLSWPLHPSFTRAFDILEPMFESGVLGEAGQGVLDSENSWDTLLDTLPDEDLANRLRREMRRLTNAQDRWLEIKSQVRAASSAHASGNARRQSRGGRAGNGLFALDLWKYEVVFQYCYPRLDVNVSKGTNHLLKSPFAVHPKTGRVCVPIDPEDVDNFDPFRVPTLKALAAQIDAYDAQNAQNASAKALPDYKKTELKSAVELLERCVVDPVALATKRRLKLEREKEAAMIGDF 505
            MSFLLFRASFLSRSSFSNRPIHLNAKNTLCTSTCGRLSAAGNRENMEIAPSNTNKVSVAAAAINDQEFSPELLRFFYNRLFPYQPMFKWLSYGNDPDNDAAHIVRDYFACREFSFTINDDIYIRYQSFRDASEMESAIQKKQPHKIDIGAVFTLPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRSCCTGAKICPKCWVFMTMAVKVVDTALREDFGFRYILWVYSGRRGVHCWVCDPNARALSNDGRSAVVEYLSLPRGNEKSKGKNGGLSWPLHPSFTRAFDILEPMFESGVLGEAGQGVLDSENSWDTLLDTLPDEDLANRLRREMRRLTNAQDRWLEIKSQVRAASSAHASGNARRQSRGGRAGNGLFALDLWKYEVVFQYCYPRLDVNVSKGTNHLLKSPFAVHPKTGRVCVPIDPEDVDNFDPFRVPTLKALAAQIDAYDAQNAQNASAKALPDYKKTELKSAVELLERCVVDPVALATKRRLKLEREKEAAMIGDF
Sbjct:    1 MSFLLFRASFLSRSSFSNRPIHLNAKNTLCTSTCGRLSAAGNRENMEIAPSNTNKVSVAAAAINDQEFSPELLRFFYNRLFPYQPMFKWLSYGNDPDNDAAHIVRDYFACREFSFTINDDIYIRYQSFRDASEMESAIQKKQPHKIDIGAVFTLPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRSCCTGAKICPKCWVFMTMAVKVVDTALREDFGFRYILWVYSGRRGVHCWVCDPNARALSNDGRSAVVEYLSLPRGNEKSKGKNGGLSWPLHPSFTRAFDILEPMFESGVLGEAGQGVLDSENSWDTLLDTLPDEDLANRLRREMRRLTNAQDRWLEIKSQVRAASSAHASGNARRQSRGGRAGNGLFALDLWKYEVVFQYCYPRLDVNVSKGTNHLLKSPFAVHPKTGRVCVPIDPEDVDNFDPFRVPTLKALAAQIDAYDAQNAQNASAKALPDYKKTELKSAVELLERCVVDPVALATKRRLKLEREKEAAMIGDF 505          
BLAST of EWM29932.1 vs. NCBI_GenBank
Match: gi|553183298|ref|XP_005853872.1| (DNA primase small subunit [Nannochloropsis gaditana CCMP526] >gi|422295194|gb|EKU22493.1| DNA primase small subunit [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 961.059 bits (2483), Expect = 0.000e+0
Identity = 460/460 (100.00%), Postives = 460/460 (100.00%), Query Frame = 0
Query:   46 MEIAPSNTNKVSVAAAAINDQEFSPELLRFFYNRLFPYQPMFKWLSYGNDPDNDAAHIVRDYFACREFSFTINDDIYIRYQSFRDASEMESAIQKKQPHKIDIGAVFTLPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRSCCTGAKICPKCWVFMTMAVKVVDTALREDFGFRYILWVYSGRRGVHCWVCDPNARALSNDGRSAVVEYLSLPRGNEKSKGKNGGLSWPLHPSFTRAFDILEPMFESGVLGEAGQGVLDSENSWDTLLDTLPDEDLANRLRREMRRLTNAQDRWLEIKSQVRAASSAHASGNARRQSRGGRAGNGLFALDLWKYEVVFQYCYPRLDVNVSKGTNHLLKSPFAVHPKTGRVCVPIDPEDVDNFDPFRVPTLKALAAQIDAYDAQNAQNASAKALPDYKKTELKSAVELLERCVVDPVALATKRRLKLEREKEAAMIGDF 505
            MEIAPSNTNKVSVAAAAINDQEFSPELLRFFYNRLFPYQPMFKWLSYGNDPDNDAAHIVRDYFACREFSFTINDDIYIRYQSFRDASEMESAIQKKQPHKIDIGAVFTLPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRSCCTGAKICPKCWVFMTMAVKVVDTALREDFGFRYILWVYSGRRGVHCWVCDPNARALSNDGRSAVVEYLSLPRGNEKSKGKNGGLSWPLHPSFTRAFDILEPMFESGVLGEAGQGVLDSENSWDTLLDTLPDEDLANRLRREMRRLTNAQDRWLEIKSQVRAASSAHASGNARRQSRGGRAGNGLFALDLWKYEVVFQYCYPRLDVNVSKGTNHLLKSPFAVHPKTGRVCVPIDPEDVDNFDPFRVPTLKALAAQIDAYDAQNAQNASAKALPDYKKTELKSAVELLERCVVDPVALATKRRLKLEREKEAAMIGDF
Sbjct:    1 MEIAPSNTNKVSVAAAAINDQEFSPELLRFFYNRLFPYQPMFKWLSYGNDPDNDAAHIVRDYFACREFSFTINDDIYIRYQSFRDASEMESAIQKKQPHKIDIGAVFTLPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRSCCTGAKICPKCWVFMTMAVKVVDTALREDFGFRYILWVYSGRRGVHCWVCDPNARALSNDGRSAVVEYLSLPRGNEKSKGKNGGLSWPLHPSFTRAFDILEPMFESGVLGEAGQGVLDSENSWDTLLDTLPDEDLANRLRREMRRLTNAQDRWLEIKSQVRAASSAHASGNARRQSRGGRAGNGLFALDLWKYEVVFQYCYPRLDVNVSKGTNHLLKSPFAVHPKTGRVCVPIDPEDVDNFDPFRVPTLKALAAQIDAYDAQNAQNASAKALPDYKKTELKSAVELLERCVVDPVALATKRRLKLEREKEAAMIGDF 460          
BLAST of EWM29932.1 vs. NCBI_GenBank
Match: gi|298715191|emb|CBJ27863.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 456.062 bits (1172), Expect = 9.607e-154
Identity = 233/479 (48.64%), Postives = 317/479 (66.18%), Query Frame = 0
Query:   41 GNRENMEIAPSNTNKVSV---AAAAINDQE-FSPELLRFFYNRLFPYQPMFKWLSYGNDPDN--DAAHIVR------DYFACREFSFTINDDIYIRYQSFRDASEMESAIQKKQPHKIDIGAVFTLPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRSCCTGAKICPKCWVFMTMAVKVVDTALREDFGFRYILWVYSGRRGVHCWVCDPNARALSNDGRSAVVEYLSLPRGNEKSKGKNGGLSWPLHPSFTRAFDILEPMFESGVLGEAGQGVLDSENSWDTLLDTLPDEDLANRLR-REMRRLTNAQDRWLEIKSQVRAASSAHASGNARRQ-SRGGRAGNGLFALDLWKYEVVFQYCYPRLDVNVSKGTNHLLKSPFAVHPKTGRVCVPIDPEDVDNFDPFRVPTLKALAAQIDAYDAQNAQNASAKALPDYKKTELKSAVELLERCVVDPVALATKRRLKLEREKEAAMIGDF 505
            G++E +  A    +K  V     +A +D+E FSP+LLR +Y RLFPY+ M++WL Y N P +  D++   +      D+F+ REFSFTI DD+YIRYQ F D  E E  +Q+KQPHKIDIGA+FTLPPK+H  VK  AF+PVEREL+FDID+TDYDD+R+CC+GAKIC +CW +MTMAV+V+D  LR+DFGF++ILWVYSGRRGVHCWV D  ARAL+N+GR AV +Y  +  GN+ ++ K   +S P+HPS  RA++ LEP+F   ++ E GQG+L   + W  LL T+P ED+   L  R     ++  D+W E+  ++         G  ++Q ++  +  +     + W+YEVVF++ YPRLDVNVSKG NHLLKSPFAVHPKTGRVCVPIDP  V  FDPF VPTL  L  QID YD ++ +    K++    KTE+K  V+  E   +  +    + + +   E+ AA+  DF
Sbjct:   11 GDQEMVAGASGVESKAPVRSKGVSADDDREAFSPDLLRIYYARLFPYEQMYRWLGYSNMPASLPDSSGKPQPVDEQADFFSKREFSFTIEDDVYIRYQCFADQKEFEQQVQRKQPHKIDIGAIFTLPPKNHLAVKPGAFQPVERELVFDIDLTDYDDVRTCCSGAKICNRCWSYMTMAVEVMDVGLRQDFGFKHILWVYSGRRGVHCWVADDAARALTNEGRGAVADYFGVVAGND-NQSKKVNVSLPIHPSLRRAYETLEPLFLEHIITEEGQGLLSDPSHWGKLLATVP-EDVRQTLEGRWKMGGSSPADKWEELVEEM------EKKGRKQQQLAKKMKPADRPPTPEQWRYEVVFEHTYPRLDVNVSKGRNHLLKSPFAVHPKTGRVCVPIDPAHVREFDPFTVPTLGQLQRQIDKYDKEHGEE--TKSVSSINKTEMKKYVQQFEDTFLTGLYKGIRVKKRDRTERIAAVTTDF 479          
BLAST of EWM29932.1 vs. NCBI_GenBank
Match: gi|676383829|ref|XP_009035193.1| (hypothetical protein AURANDRAFT_58835 [Aureococcus anophagefferens] >gi|323454523|gb|EGB10393.1| hypothetical protein AURANDRAFT_58835 [Aureococcus anophagefferens])

HSP 1 Score: 423.705 bits (1088), Expect = 8.650e-142
Identity = 219/444 (49.32%), Postives = 287/444 (64.64%), Query Frame = 0
Query:   67 EFSPELLRFFYNRLFPYQPMFKWLSYGNDPDNDAAHIVR--DYFACREFSFTINDDIYIRYQSFRDASEMESAIQKKQPHKIDIGAVFTLPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRSCCTGAKICPKCWVFMTMAVKVVDTALREDFGFRYILWVYSGRRGVHCWVCDPNARALSNDGRSAVVEYLSLPRGNEKSKGKNGGLSWPLHPSFTRAFDILEPMFESGVLGEAGQGVLDSENSWDTLLDTLPDEDLANRLRREMRRLTNAQ---DRWLEIKSQVRAASSAHASGNARRQSRGGRAGNGLFALDLWKYEVVFQYCYPRLDVNVSKGTNHLLKSPFAVHPKTGRVCVPIDPEDVDNFDPFRVPTLKALAAQIDAYDAQNAQNASAKALPDYKKTELKSAVELLERCVVDPVALATKRRLKLEREKEAAMIGDF 505
            +F  +LLR +Y RLFPY+ M KWL+Y   P  DA+  V      A RE S T+ DD+YIRYQ F DA  M+  + K+QPHKIDIGAVF   PKDH ++K   F+P EREL+FDID++DYDD+R+CC GA +C KCW +MT A +V +++LREDFGF +I+WVYSGRRGVHCWV D  +R L+N+ R A+++Y S+  GNE S  K   L  PLHPS  RA+ +LEP+F   V+ E GQ +L S   W  LL TLP ED+A+++ +   R  +A     +W  +K      +S     +A++Q R           +LWKYEVVF +CYPRLD NVSK  NHLLKSPFA HPKTGRVCVP D +    FDP  V TLK LA QID         AS + +PD +KT+LK AV   E+  +DP+  +  +  + E+E++AAM+GDF
Sbjct:   15 KFDADLLRMYYARLFPYEQMCKWLAY--QPHGDASTPVGTGSTLAKRELSLTLADDVYIRYQCFGDAKAMKELMTKRQPHKIDIGAVFNASPKDHLSIKN--FRPEERELVFDIDLSDYDDVRTCCQGATVCRKCWQYMTCACRVCESSLREDFGFEHIMWVYSGRRGVHCWVGDAESRKLTNEARLAIIKYFSVVGGNENS-AKKTDLQAPLHPSLERAYKLLEPLFIKHVIPEDGQKLLASPEHWSKLLATLP-EDIADQIAKHWARAGDASTPAQKWDALKG---LCASPDRGSSAKKQKRAQ-------VDELWKYEVVFTHCYPRLDENVSKHRNHLLKSPFAAHPKTGRVCVPFDAKQCAAFDPTAVVTLKDLAKQID---------ASTEDVPDLEKTDLKHAVRFFEKSFIDPLLKSLHKGQRDEKEQQAAMVGDF 433          
BLAST of EWM29932.1 vs. NCBI_GenBank
Match: gi|780140299|ref|XP_011680545.1| (PREDICTED: DNA primase small subunit-like [Strongylocentrotus purpuratus])

HSP 1 Score: 421.009 bits (1081), Expect = 9.028e-141
Identity = 220/438 (50.23%), Postives = 277/438 (63.24%), Query Frame = 0
Query:   50 PSNTNKVSVAAAAINDQEFSPELLRFFYNRLFPYQPMFKWLSYGNDPDNDAAHIVRDYFACREFSFTINDDIYIRYQSFRDASEMESAIQKKQPHKIDIGAVFTLPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRSCCTGAKICPKCWVFMTMAVKVVDTALREDFGFRYILWVYSGRRGVHCWVCDPNARALSNDGRSAVVEYLSLPRGNEKSKGKNGGLSWPLHPSFTRAFDILEPMFESGVLGEAGQGVLDSENSWDTLLDTLPDEDLANRLRREMRRLTNAQDRWLEIKSQVRAASSAHASGNARRQSRGGRAGNGLFALDLWKYEVVFQYCYPRLDVNVSKGTNHLLKSPFAVHPKTGRVCVPIDPEDVDNFDPFRVPTLKALAAQIDAYDAQNA-------QNASAKALPDYKKTELKSAVELLERCVV 480
            PS +N+  V +    D    PELL  +Y RLFP+ P ++WL+YG  P        + YF  REFSFT+ +DIYIRYQSF D +EME  IQK+ P+KIDIGAVFT  PKDH T+KA AF+  E+EL+FDIDMTDYDD+RSCC GA IC KCW  MT+A+K+VD+AL EDFGF + LWVYSGRRGVHCWVCD  AR LS + RSA+ EYLS+ +G E ++ K   L   LHPS  RA  ++   FE   L +  Q +L  + SW  +L  +PD+ L   L  +M + +N+ +RW  ++ +V    S           R  R G  L A      E+ FQYCYPRLDVNVSKG NHLLKSPF VHPKTGRVCV +D  ++D FDP  VP +  L  +ID YD +N        Q  + K + DYKKT L   VE+ E+ VV
Sbjct:    2 PSESNETPVKSNYSPDT--LPELLPVYYKRLFPFGPYYRWLNYGGAP--------KSYFLNREFSFTLENDIYIRYQSFSDQNEMEKEIQKRCPYKIDIGAVFTHKPKDHRTLKAAAFQAQEKELVFDIDMTDYDDVRSCCQGADICSKCWPLMTIAIKIVDSALYEDFGFEHRLWVYSGRRGVHCWVCDEAARKLSQNARSAIAEYLSIVKGGE-NQVKKVSLPDQLHPSVERAKQVIVSYFEDYALNK--QDILGDKESWKKVLALVPDDTLRGHLENDMTKGSNSLERWKLLRERVSREVSV---------GRAKRCGQ-LVA------EIAFQYCYPRLDVNVSKGVNHLLKSPFCVHPKTGRVCVAMDTAELDRFDPLAVPDISQLCLEIDEYDRKNQPTENDENQPPTKKRIKDYKKTSLLKNVEVFEKFVV 410          
BLAST of EWM29932.1 vs. NCBI_GenBank
Match: gi|301121816|ref|XP_002908635.1| (DNA primase small subunit, putative [Phytophthora infestans T30-4] >gi|262103666|gb|EEY61718.1| DNA primase small subunit, putative [Phytophthora infestans T30-4])

HSP 1 Score: 420.239 bits (1079), Expect = 1.908e-140
Identity = 216/450 (48.00%), Postives = 284/450 (63.11%), Query Frame = 0
Query:   66 QEFSPELLRFFYNRLFPYQPMFKWLSYGNDPDNDAAHIVRDYFACREFSFTINDDIYIRYQSFRDASEMESAIQKKQPHKIDIGAVFTLPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRSCCTGAKICPKCWVFMTMAVKVVDTALREDFGFRYILWVYSGRRGVHCWVCDPNARALSNDGRSAVVEYLSLPRGNEKSKGKNGGLSWPLHPSFTRAFDILEPMFESGVLGEAGQGVLDSENSWDTLLDTLPDEDL-ANRLRR--EMRRLTNAQDRWLEIKSQV-----RAASSAHASGNARRQSRGGRAGNGLFALDLWK--YEVVFQYCYPRLDVNVSKGTNHLLKSPFAVHPKTGRVCVPIDPEDVDNFDPFRVPTLKALAAQIDAYDAQNAQNASAKALPDYKKTELKSAVELLERCVVDPVALATKRRLKLEREKEAAMIGDF 505
            ++FS ELL+ +Y+RLFPYQ M +WLSY    D     + R     RE S+T+ +D YIRY++F +A E+++++ K  P KIDIGAVF++ P D   V A  F P +REL+FDID+TDYDDIR+CC GA IC +CW FM  AVKV++ ALREDFGF  +LWVYSGRRG+HCW+ D +AR L N+ RSAVV YLSL  GNE S  +   L  PLHPS  RA+  LEP+FE  +L + GQG++ SE  W+ LL  +PDED+ AN  RR     R T   ++W E++  V     + A+SA +  N +R +    A     A +L     E+V  Y YPRLD NVSK  NHLLKSPFAVHPKTGRVCVPID   +++FDPF+VPTL  L  ++D+               D   T +K  V+  E   + P+A   KR+ +  RE +AAM GD+
Sbjct:    4 EDFSTELLQLYYDRLFPYQQMAQWLSY----DGGEEFLFR-----RELSYTLENDTYIRYKAFHNAEELKTSMCKTMPFKIDIGAVFSVSPADKGKVSAVDFTPEQRELVFDIDLTDYDDIRTCCEGAAICNRCWQFMIAAVKVLNAALREDFGFENLLWVYSGRRGIHCWIADESARGLENEARSAVVGYLSLVEGNENS-ARKVKLREPLHPSLDRAYRQLEPLFEDMILSDKGQGIMSSEKQWNKLLAMVPDEDIRANMTRRWSATNRSTGPAEKWRELRDAVEKQVLKNANSARSGSNVKRSAPNSDASKRFLAAELRTCLQEIVLAYLYPRLDANVSKQRNHLLKSPFAVHPKTGRVCVPIDVSSMESFDPFKVPTLGQLHEELDS---------------DKSATSMKKYVDFFESSFLKPLAAVAKRKERDARESDAAMTGDW 428          
BLAST of EWM29932.1 vs. NCBI_GenBank
Match: gi|1126162909|ref|XP_019638399.1| (PREDICTED: DNA primase small subunit-like [Branchiostoma belcheri])

HSP 1 Score: 418.313 bits (1074), Expect = 1.113e-139
Identity = 212/430 (49.30%), Postives = 272/430 (63.26%), Query Frame = 0
Query:   55 KVSVAAAAINDQEFSPELLRFFYNRLFPYQPMFKWLSYGNDPDNDAAHIVRDYFACREFSFTINDDIYIRYQSFRDASEMESAIQKKQPHKIDIGAVFTLPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRSCCTGAKICPKCWVFMTMAVKVVDTALREDFGFRYILWVYSGRRGVHCWVCDPNARALSNDGRSAVVEYLSLPRGNEKSKGKNGGLSWPLHPSFTRAFDILEPMFESGVLGEAGQGVLDSENSWDTLLDTLPDEDLANRLRREMRRLTNAQDRWLEIKSQVRAASSAHASGNARRQSRGGRAGNGLFALDLWKYEVVFQYCYPRLDVNVSKGTNHLLKSPFAVHPKTGRVCVPIDPEDVDNFDPFRVPTLKALAAQIDAYDAQ-----NAQNASAKALPDYKKTELKSAVELLERCV 479
            K S A     D+   PELL  +Y RLFPY P +KWLSYG         + + YF  REFSFT+ DDIYIRYQSF D SEME  IQ+  P+KIDIGAVF+  PKDH TVK  AF+  E+EL+FDIDMTDYDD+R+CC+GA IC  CW  M +A+K+VD ALR+DFGF + LWVYSGRRGVHCWVCD + R L    R+A+ EYLS+ +G E S+ K   +  P+HPS   AF+I+    +  +  +  Q +L +E+    +L   P++ L   L+ +  +  +++D W   +  ++   S     N ++           F L    +EVVFQYCYPRLDVNVSKG NHLLKSPF +HPKTGRVCVPID EDVDNFDPF VPT+  L  +ID Y  Q      AQ  + + + DY+KT LK +VE   + V
Sbjct:    7 KQSTAENTAYDRNDLPELLPIYYKRLFPYGPYYKWLSYGG--------VEKSYFQNREFSFTLKDDIYIRYQSFSDQSEMEKEIQRVMPYKIDIGAVFSHKPKDHKTVKPGAFQAQEKELVFDIDMTDYDDVRNCCSGANICENCWPLMVIAIKIVDRALRDDFGFEHRLWVYSGRRGVHCWVCDESTRKLDQTARTAIAEYLSVVKGGE-SQIKKVTMRDPMHPSLKAAFEIMSKHMKHYLFEQ--QDILGTEDRLKKVLRLFPEQGLREILKEDADKGGDSKDIW---ERWLKTVKSEKERDNMKKSP---------FPL----HEVVFQYCYPRLDVNVSKGVNHLLKSPFCIHPKTGRVCVPIDVEDVDNFDPFAVPTISTLCKEIDEYKEQPGKENEAQPGTKRKIQDYQKTSLKKSVETFNKFV 409          
BLAST of EWM29932.1 vs. NCBI_GenBank
Match: gi|675192953|ref|XP_008905361.1| (hypothetical protein PPTG_11896 [Phytophthora parasitica INRA-310] >gi|566024266|gb|ETI47177.1| hypothetical protein F443_08551 [Phytophthora parasitica P1569] >gi|568094752|gb|ETN09528.1| hypothetical protein PPTG_11896 [Phytophthora parasitica INRA-310] >gi|570327910|gb|ETO75858.1| hypothetical protein F444_08620 [Phytophthora parasitica P1976])

HSP 1 Score: 417.927 bits (1073), Expect = 1.505e-139
Identity = 216/450 (48.00%), Postives = 284/450 (63.11%), Query Frame = 0
Query:   66 QEFSPELLRFFYNRLFPYQPMFKWLSYGNDPDNDAAHIVRDYFACREFSFTINDDIYIRYQSFRDASEMESAIQKKQPHKIDIGAVFTLPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRSCCTGAKICPKCWVFMTMAVKVVDTALREDFGFRYILWVYSGRRGVHCWVCDPNARALSNDGRSAVVEYLSLPRGNEKSKGKNGGLSWPLHPSFTRAFDILEPMFESGVLGEAGQGVLDSENSWDTLLDTLPDEDL-ANRLRREMRRLTNA--QDRWLEIKSQV-----RAASSAHASGNARRQSRGGRAGNGLFALDLWK--YEVVFQYCYPRLDVNVSKGTNHLLKSPFAVHPKTGRVCVPIDPEDVDNFDPFRVPTLKALAAQIDAYDAQNAQNASAKALPDYKKTELKSAVELLERCVVDPVALATKRRLKLEREKEAAMIGDF 505
            ++FS ELL+ +Y+RLFPYQ M +WLSY    D     + R     RE S+T+ +D YIRY++F +A E+++++ K  P KIDIGAVF++ P D   V A  F P +REL+FDID+TDYDDIR+CC GA IC +CW FM  AVKV++ ALREDFGF  +LWVYSGRRG+HCWV D  AR L N+ RSAV+ YLSL  GNE S  +   L  PLHPS  RA+ +LEP+FE  +L + GQG++ SE  W+ LL  +PDED+ AN  RR      N    ++W E++  V     + A+SA +  N +RQ+    A     A +L     E+V  Y YPRLD NVSK  NHLLKSPFAVHPKTGRVCVPID   +++FDPF+VPTL  L  ++D+               D   T +K  V+  E   + P+A   KR+ +  RE +AAM GD+
Sbjct:    4 EDFSAELLQLYYDRLFPYQQMTQWLSY----DGGEEFLFR-----RELSYTLENDTYIRYKAFHNAEELKTSMCKTMPFKIDIGAVFSVSPADKGKVSAADFTPEQRELVFDIDLTDYDDIRTCCEGAAICNRCWQFMVAAVKVLNAALREDFGFENLLWVYSGRRGIHCWVADERARELENEARSAVIGYLSLVEGNENS-ARKVKLREPLHPSLDRAYRLLEPLFEDMILSDKGQGIMCSEKQWNKLLAMVPDEDIRANMTRRWSATNCNTGPAEKWRELRDAVEKQVLKNANSARSGSNVKRQAPNSDANKRFMAAELRTCLQEIVLAYLYPRLDANVSKQRNHLLKSPFAVHPKTGRVCVPIDISSMESFDPFKVPTLGQLHEELDS---------------DKSATSMKKYVDFFESSFMKPLAAVAKRKERDARESDAAMTGDW 428          
BLAST of EWM29932.1 vs. NCBI_GenBank
Match: gi|568019545|gb|ETL93689.1| (hypothetical protein L917_08216 [Phytophthora parasitica])

HSP 1 Score: 417.542 bits (1072), Expect = 1.997e-139
Identity = 215/450 (47.78%), Postives = 284/450 (63.11%), Query Frame = 0
Query:   66 QEFSPELLRFFYNRLFPYQPMFKWLSYGNDPDNDAAHIVRDYFACREFSFTINDDIYIRYQSFRDASEMESAIQKKQPHKIDIGAVFTLPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRSCCTGAKICPKCWVFMTMAVKVVDTALREDFGFRYILWVYSGRRGVHCWVCDPNARALSNDGRSAVVEYLSLPRGNEKSKGKNGGLSWPLHPSFTRAFDILEPMFESGVLGEAGQGVLDSENSWDTLLDTLPDEDL-ANRLRREMRRLTNA--QDRWLEIKSQV-----RAASSAHASGNARRQSRGGRAGNGLFALDLWK--YEVVFQYCYPRLDVNVSKGTNHLLKSPFAVHPKTGRVCVPIDPEDVDNFDPFRVPTLKALAAQIDAYDAQNAQNASAKALPDYKKTELKSAVELLERCVVDPVALATKRRLKLEREKEAAMIGDF 505
            ++FS ELL+ +Y+RLFPYQ M +WLSY    D     + R     RE S+T+ +D YIRY++F +A E+++++ K  P KIDIGAVF++ P D   V A  F P +REL+FDID+TDYDDIR+CC GA IC +CW FM  AVKV++ ALREDFGF  +LWVYSGRRG+HCWV D  AR L N+ RSAV+ YLSL  GNE S  +   L  PLHPS  RA+ +LEP+FE  ++ + GQG++ SE  W+ LL  +PDED+ AN  RR      N    ++W E++  V     + A+SA +  N +RQ+    A     A +L     E+V  Y YPRLD NVSK  NHLLKSPFAVHPKTGRVCVPID   +++FDPF+VPTL  L  ++D+               D   T +K  V+  E   + P+A   KR+ +  RE +AAM GD+
Sbjct:    4 EDFSAELLQLYYDRLFPYQQMTQWLSY----DGGEEFLFR-----RELSYTLENDTYIRYKAFHNAEELKTSMCKTMPFKIDIGAVFSVSPADKGKVSAADFTPEQRELVFDIDLTDYDDIRTCCEGAAICNRCWQFMVAAVKVLNAALREDFGFENLLWVYSGRRGIHCWVADERARELENEARSAVIGYLSLVEGNENS-ARKVKLREPLHPSLDRAYRLLEPLFEDMIMSDKGQGIMCSEKQWNKLLAMVPDEDIRANMTRRWSATNCNTGPTEKWRELRDAVEKQVLKNANSARSGSNVKRQAPNSDANKRFMAAELRTCLQEIVLAYLYPRLDANVSKQRNHLLKSPFAVHPKTGRVCVPIDISSMESFDPFKVPTLGQLHEELDS---------------DKSATSMKKYVDFFESSFMKPLAAVAKRKERDARESDAAMTGDW 428          
BLAST of EWM29932.1 vs. NCBI_GenBank
Match: gi|568049961|gb|ETM46927.1| (hypothetical protein L914_08273 [Phytophthora parasitica])

HSP 1 Score: 417.542 bits (1072), Expect = 2.537e-139
Identity = 215/450 (47.78%), Postives = 284/450 (63.11%), Query Frame = 0
Query:   66 QEFSPELLRFFYNRLFPYQPMFKWLSYGNDPDNDAAHIVRDYFACREFSFTINDDIYIRYQSFRDASEMESAIQKKQPHKIDIGAVFTLPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRSCCTGAKICPKCWVFMTMAVKVVDTALREDFGFRYILWVYSGRRGVHCWVCDPNARALSNDGRSAVVEYLSLPRGNEKSKGKNGGLSWPLHPSFTRAFDILEPMFESGVLGEAGQGVLDSENSWDTLLDTLPDEDL-ANRLRREMRRLTNA--QDRWLEIKSQV-----RAASSAHASGNARRQSRGGRAGNGLFALDLWK--YEVVFQYCYPRLDVNVSKGTNHLLKSPFAVHPKTGRVCVPIDPEDVDNFDPFRVPTLKALAAQIDAYDAQNAQNASAKALPDYKKTELKSAVELLERCVVDPVALATKRRLKLEREKEAAMIGDF 505
            ++FS ELL+ +Y+RLFPYQ M +WLSY    D     + R     RE S+T+ +D YIRY++F +A E+++++ K  P KIDIGAVF++ P D   V A  F P +REL+FDID+TDYDDIR+CC GA IC +CW FM  AVKV++ ALREDFGF  +LWVYSGRRG+HCWV D  AR L N+ RSAV+ YLSL  GNE S  +   L  PLHPS  RA+ +LEP+FE  ++ + GQG++ SE  W+ LL  +PDED+ AN  RR      N    ++W E++  V     + A+SA +  N +RQ+    A     A +L     E+V  Y YPRLD NVSK  NHLLKSPFAVHPKTGRVCVPID   +++FDPF+VPTL  L  ++D+               D   T +K  V+  E   + P+A   KR+ +  RE +AAM GD+
Sbjct:    4 EDFSAELLQLYYDRLFPYQQMTQWLSY----DGGEEFLFR-----RELSYTLENDTYIRYKAFHNAEELKTSMCKTMPFKIDIGAVFSVSPADKGKVSAADFTPEQRELVFDIDLTDYDDIRTCCEGAAICNRCWQFMVAAVKVLNAALREDFGFENLLWVYSGRRGIHCWVADERARELENEARSAVIGYLSLVEGNENS-ARKVKLREPLHPSLDRAYRLLEPLFEDMIMSDKGQGIMCSEKQWNKLLAMVPDEDIRANMTRRWSATNCNTGPAEKWRELRDAVEKQVLKNANSARSGSNVKRQAPNSDANKRFMAAELRTCLQEIVLAYLYPRLDANVSKQRNHLLKSPFAVHPKTGRVCVPIDISSMESFDPFKVPTLGQLHEELDS---------------DKSATSMKKYVDFFESSFMKPLAAVAKRKERDARESDAAMTGDW 428          
The following BLAST results are available for this feature:
BLAST of EWM29932.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112518|gb|EWM29932.1|0.000e+0100.00dna primase small subunit [Nannochloropsis gaditan... [more]
gi|553183298|ref|XP_005853872.1|0.000e+0100.00DNA primase small subunit [Nannochloropsis gaditan... [more]
gi|298715191|emb|CBJ27863.1|9.607e-15448.64conserved unknown protein [Ectocarpus siliculosus][more]
gi|676383829|ref|XP_009035193.1|8.650e-14249.32hypothetical protein AURANDRAFT_58835 [Aureococcus... [more]
gi|780140299|ref|XP_011680545.1|9.028e-14150.23PREDICTED: DNA primase small subunit-like [Strongy... [more]
gi|301121816|ref|XP_002908635.1|1.908e-14048.00DNA primase small subunit, putative [Phytophthora ... [more]
gi|1126162909|ref|XP_019638399.1|1.113e-13949.30PREDICTED: DNA primase small subunit-like [Branchi... [more]
gi|675192953|ref|XP_008905361.1|1.505e-13948.00hypothetical protein PPTG_11896 [Phytophthora para... [more]
gi|568019545|gb|ETL93689.1|1.997e-13947.78hypothetical protein L917_08216 [Phytophthora para... [more]
gi|568049961|gb|ETM46927.1|2.537e-13947.78hypothetical protein L914_08273 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna739rna739Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications