rna739, rna739 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna739
Unique Name	rna739
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1934
Alignment location	CM002456.1:294332..296328 +

Link to JBrowse

Properties


Property Name	Value
Product	dna primase small subunit
Orig transcript id	gnl\|cribi\|Naga_100351g4.7473.mrna
Orig protein id	gnl\|cribi\|Naga_100351g4.7473
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:294332..296328 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100351g4	gene708	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna739	rna739-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29932.1	cds739	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:294332..296328+
coding sequence from alignment at CM002456.1:294332..296328+

mRNA sequence

>rna739 ID=rna739|Name=rna739|organism=Nannochloropsis gaditana|type=mRNA|length=1934bp
TGAGTATTTGTCGGCTAGAGCAAAAATGTGGCCATCGTAGCTTTTTCACA
CAATATTACTTCCTGTTCGAGCGATATTTCCCAGTCTGTTGAAAGGCATT
CATAATATATTTGTAGCCGTAGTCATCGGGAAGGGGAGGTTAACGCAGCA
GAGAAGGGAACGGCGATATCTTCAACATCAATGACCGGCCGTGCACGACC
CTCTGCTGCCAAATCCCACGCACCCTGACATTCCCCTGCATCCCAATAAT
ATCTATACGAAAAGGCTTGACGCTTTGTTCGTATTTTGCCATGATCTTTC
GGAACGTGGTGTGTATTTTCGGGGCGCTCTTCGTAGCATTCGGCGGCGTC
CAAGCATTCCTTCTCCCGTCAGTCCAGTCCTGTTCCGCCTTGAGCATCTG
GCCCCGGGGTGTCGCGCGTCAGAACTTAAAATGCAACGTCATACCCGCAC
AAGAGCAGCAGAGCGATCATTCGCAATCTAAAGTGCAAGGCAATTTGGCT
GATGTGATCGCAGACGCCCGCGCCCAGGAGGAAGCGGAAAAAATCATGAA
GGAACTGGAGGACGGCGCTGTTCGCGAAATGGGAGAAGCACAGGCAGCGG
GTCCTAAATATATGCCGAGCACCGAGCCTGATGATCCCATTATCATGTCT
TTGCAAAAAGTCTTGGGTGTAGGACGTGTGGAGAAATGGGAGCTCCTGGA
TTCCCGGTGGAACGGGAACGAGGTCTTCAAGTACACGACAGACAAGGGAC
TCTTTTTCATCAAACTCAATCGCGTCGAAGACCCCTCTGTGTTTCTGACT
GAGGCGGTGGGCTTGAGTGCCTTGGCCGCGACTAACACGCTCCCCTGTCC
CAAGCCTCTCCACCTGGGGAAGCTTCCCAAAGTCGGGGACGTGGGTCCGG
GTGCCTTCATGGTGCTGGAGCATTTGAAACTCCTGCCTTTTGGAATCATG
CGTACTGACATGCAGCAACGCCTAGGAGAGCAATTGGCCGCCCTTCACCT
CGACCAAACCCATGCCGCCCTCCACCGGGGCAGGTTCGGATTTTCCGTCT
CGAATTTTCTTGCGTTGACCCCTCTGAACAACACCTGGACCGATGACTGG
CCTTCCTTTCTGGCCCGTCGCCTCGAGTCCCAGGTGGCGGCCTTGTACCA
AGAAAAGCAGTACGGTCGTGCTGCACTCAATGAAACGGACATGGAGCTGC
GCATATTGGGCTCTCGCGTCATCCGGGCGGTGCCCGCCTTGTTGGCAGGG
GTCAAGGTGTCCCCATCTCTTATTCACGGTGATCTATGGATTGGCAACGC
CGGTGCTACGGAGGCTGGTCCCGTGATCTTCGACCCTGCCTGTTTCTTTG
GCCATCACGAGATGGAACTGGCGATGATGACTTTGTTTGGGGGCTTTCGC
GACGAGTTTTGGAACGCGTACCACGCGCGTTTGCCGAAAGAAAAAGGCTT
TGAGACCCGTCAGAAACTCTATCAGTTCTACTACTATTTGAACCAATTGA
ATCTTTTCGGGGACGCGGGGGTGAAGAGGACGTGCGTGCGCCTGGCCGAG
GAGCTGTTATTGATTTAGCGTGGCGAAGCAGGGAAGGAAAAGCAGCATGT
CTTTCTAAGTAGTAAGAAATAGCAGCATGAAGCGTCTTAAAAAAGGGAAT
TTTGCGTTTTTGAAGGCTTACGAGCGCCATTTTGCTGTGACTGATTAAAA
GTGACAGTCGGCGGAAAGCGTTACATTATCCTAGAAATATCATCTCTCCT
GATGCGAAAATCAAATCGTTCAAAATATTCCTCGATGATTTTATGTATGA
AGACATATTATCTGTAGAGTTCGCGATCCAAGTGCGCATTGCTTTCTGTT
TAACAATGTAGTTTCAGCATGAGGTAGGACTCATGAGTGGACGTGCGCTA
AAATCTGGGACAACAACTGAAAACTTTGCACCAA

protein sequence of rna739

>rna739-protein ID=rna739-protein|Name=rna739|organism=Nannochloropsis gaditana|type=polypeptide|length=505bp
MSFLLFRASFLSRSSFSNRPIHLNAKNTLCTSTCGRLSAAGNRENMEIAP
SNTNKVSVAAAAINDQEFSPELLRFFYNRLFPYQPMFKWLSYGNDPDNDA
AHIVRDYFACREFSFTINDDIYIRYQSFRDASEMESAIQKKQPHKIDIGA
VFTLPPKDHHTVKAEAFKPVERELIFDIDMTDYDDIRSCCTGAKICPKCW
VFMTMAVKVVDTALREDFGFRYILWVYSGRRGVHCWVCDPNARALSNDGR
SAVVEYLSLPRGNEKSKGKNGGLSWPLHPSFTRAFDILEPMFESGVLGEA
GQGVLDSENSWDTLLDTLPDEDLANRLRREMRRLTNAQDRWLEIKSQVRA
ASSAHASGNARRQSRGGRAGNGLFALDLWKYEVVFQYCYPRLDVNVSKGT
NHLLKSPFAVHPKTGRVCVPIDPEDVDNFDPFRVPTLKALAAQIDAYDAQ
NAQNASAKALPDYKKTELKSAVELLERCVVDPVALATKRRLKLEREKEAA
MIGDF

mRNA from alignment at CM002456.1:294332..296328+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna739 ID=rna739|Name=rna739|organism=Nannochloropsis gaditana|type=mRNA|length=1997bp|location=Sequence derived from alignment at CM002456.1:294332..296328+ (Nannochloropsis gaditana)
CGCACAGCTTGCCTTTCTTGGGCCTTCGCTTGTAGCAGTCTTggcgaagg
gaggcagctttCCTCGTTTCCGCCTCCGCGCCGCGATCGTAACAAGTACC
GAAGAAAATGACTGCAGGTACGGATAGCCCCCCTCATGTAAATTTTCACG
GGTTAAATTGAGCCAGTCAAATTTCATTTAGTGTCCCCGACACTGCAATG
tcgtttctcctttttcgcgcgtcctttctttcccgctcATCGTTTTCCAA
CCGTCCCATCCACCTCAATGCAAAAAACACACTCTGCACTTCGACTTGTG
GACGTTTGTCAGCTGCGGGAAACAGAGAAAATATGGAGATCGCGCCTTCC
AACACGAATAAAGTATCAGTAGCAGCGGCCGCCATCAATGATCAAGAATT
CAGCCCTGAACTTTTGCGATTCTTCTACAaccgcctcttcccttaTCAAC
CCATGTTTAAATGGCTTTCCTACGGAAATGATCCTGACAATGATGCTGCC
CATATCGTCCGGGATTACTTCGCCTGTCGTGAATTTTCCTTTACGATAAA
TGATGACATCTACATACGATATCAATCATTCCGGGATGCCTCCGAAATGG
AGTCAGCGATACAGAAGAAACAACCTCACAAAATAGACATAGGGGCCGTG
TTTACGCTGCCTCCCAAAGATCATCACACTGTTAAAGCAGAGGTCCGTGA
AAAATTGGGATTGGCAGGGAAAGCCGGCCGACATTCTGACCACATATTTC
CCTTCGTATTCCTCCTTCGTCAGGCCTTCAAACCCGTGGAACGCGAGCTC
ATTTTCGACATCGACATGACAGACTACGACGACATCCGAAGCTGTTGCAC
AGGGGCCAAAATTTGTCCCAAGTGCTGGGTCTTCATGACCATGGCCGTGA
AAGTCGTGGACACCGCCTTACGGGAGGATTTCGGGTTTCGATATATTTTG
TGGGTGTACTCCGGTCGGCGCGGCGTGCATTGTTGGGTGTGCGATCCCAA
CGCCCGTGCCTTGTCGAACGATGGGCGTAGCGCCGTGGTGGAATACTTGT
CGTTGCCGCGGGGAAacgagaagagcaaggggaagaacGGGGGGTTGTCC
TGGCCCCTCCATCCGTCCTTTACGCGGGCTTTTGACATCTTGGAGCCCAT
GTTCGAGTCAGGGGTCCTtggggaggcaggacagGGGGTGTTGGACTCAG
AGAATTCGTGGGACACCCTTTTGGACACGCTCCCCGACGAAGACCTGGCC
AACCGGCTTCGAAGGGAAATGCGACGCTTGACCAACGCGCAGGACCGATG
GCTCGAGATCAAATCCCAGGTGCGCGCGGCAAGTTCTGCCCATGCCAGTG
GAAACGCCCGCCGGCAGAGTCGTGGTGGCCGGGCAGGGAACGGTCTCTTC
GCCCTCGACCTGTGGAAGTACGAGGTGGTTTTCCAGTATTGCTACCCTCG
GTTGGACGTGAACGTGTCGAAGGGCACCAACCACTTGCTCAAATCGCCCT
TCGCGGTCCACCCGAAGACGGGACGTGTGTGCGTGCCCATTGATCCCGAG
GATGTGGACAATTTCGACCCATTTCGGGTCCCCACGCtgaaggccttggc
cgcgcaGATTGACGCCTACGATGCCCAGAATGCTCAAAATGCATCGGCCA
AAGCACTGCCCGATTACAAAAAAACGGAGCTGAAAAGCGCCGTGGAGCTG
CTGGAGCGATGTGTGGTGGATCCTGTGGCCCTGGCTACGAAGAGGCGATT
GAAactggagagggagaaggaggctgccATGATCGGAGACTTCTAGTCTG
GCCCGCCCATGAGAACGAAAGGaccgagggaagaggaaagggagggggga
gatgagCATGCATGTGGGGATCAAATGATCATAACAATGGGTGCAAGCCC
AAAAATTGAGTAAAGTGGGAAAGGCCGGGCTTCACGTCGCCCACATTTGT
ACGAACGCTTCATAGAAAGTACTGAGAAACAAATCAGAAAGAAAGGC

Coding sequence (CDS) from alignment at CM002456.1:294332..296328+

>rna739 ID=rna739|Name=rna739|organism=Nannochloropsis gaditana|type=CDS|length=3036bp|location=Sequence derived from alignment at CM002456.1:294332..296328+ (Nannochloropsis gaditana)
ATGtcgtttctcctttttcgcgcgtcctttctttcccgctcATCGTTTTC
CAACCGTCCCATCCACCTCAATGCAAAAAACACACTCTGCACTTCGACTT
GTGGACGTTTGTCAGCTGCGGGAAACAGAGAAAATATGGAGATCGCGCCT
TCCAACACGAATAAAGTATCAGTAGCAGCGGCCGCCATCAATGATCAAGA
ATTCAGCCCTGAACTTTTGCGATTCTTCTACAaccgcctcttcccttaTC
AACCCATGTTTAAATGGCTTTCCTACGGAAATGATCCTGACAATGATGCT
GCCCATATCGTCCGGGATTACTTCGCCTGTCGTGAATTTTCCTTTACGAT
AAATGATGACATCTACATACGATATCAATCATTCCGGGATGCCTCCGAAA
TGGAGTCAGCGATACAGAAGAAACAACCTCACAAAATAGACATAGGGGCC
GTGTTTACGCTGCCTCCCAAAGATCATCACACTGTTAAAGCAGAGGCCTT
CAAACCCGTGGAACGCGAGCTCATTTTCGACATCGACATGACAGACTACG
ACGACATCCGAAGCTGTTGCACAGGGGCCAAAATTTGTCCCAAGTGCTGG
GTCTTCATGACCATGGCCGTGAAAGTCGTGGACACCGCCTTACGGGAGGA
TTTCGGGTTTCGATATATTTTGTGGGTGTACTCCGGTCGGCGCGGCGTGC
ATTGTTGGGTGTGCGATCCCAACGCCCGTGCCTTGTCGAACGATGGGCGT
AGCGCCGTGGTGGAATACTTGTCGTTGCCGCGGGGAAacgagaagagcaa
ggggaagaacGGGGGGTTGTCCTGGCCCCTCCATCCGTCCTTTACGCGGG
CTTTTGACATCTTGGAGCCCATGTTCGAGTCAGGGGTCCTtggggaggca
ggacagGGGGTGTTGGACTCAGAGAATTCGTGGGACACCCTTTTGGACAC
GCTCCCCGACGAAGACCTGGCCAACCGGCTTCGAAGGGAAATGCGACGCT
TGACCAACGCGCAGGACCGATGGCTCGAGATCAAATCCCAGGTGCGCGCG
GCAAGTTCTGCCCATGCCAGTGGAAACGCCCGCCGGCAGAGTCGTGGTGG
CCGGGCAGGGAACGGTCTCTTCGCCCTCGACCTGTGGAAGTACGAGGTGG
TTTTCCAGTATTGCTACCCTCGGTTGGACGTGAACGTGTCGAAGGGCACC
AACCACTTGCTCAAATCGCCCTTCGCGGTCCACCCGAAGACGGGACGTGT
GTGCGTGCCCATTGATCCCGAGGATGTGGACAATTTCGACCCATTTCGGG
TCCCCACGCtgaaggccttggccgcgcaGATTGACGCCTACGATGCCCAG
AATGCTCAAAATGCATCGGCCAAAGCACTGCCCGATTACAAAAAAACGGA
GCTGAAAAGCGCCGTGGAGCTGCTGGAGCGATGTGTGGTGGATCCTGTGG
CCCTGGCTACGAAGAGGCGATTGAAactggagagggagaaggaggctgcc
ATGATCGGAGACTTCTAGATGtcgtttctcctttttcgcgcgtcctttct
ttcccgctcATCGTTTTCCAACCGTCCCATCCACCTCAATGCAAAAAACA
CACTCTGCACTTCGACTTGTGGACGTTTGTCAGCTGCGGGAAACAGAGAA
AATATGGAGATCGCGCCTTCCAACACGAATAAAGTATCAGTAGCAGCGGC
CGCCATCAATGATCAAGAATTCAGCCCTGAACTTTTGCGATTCTTCTACA
accgcctcttcccttaTCAACCCATGTTTAAATGGCTTTCCTACGGAAAT
GATCCTGACAATGATGCTGCCCATATCGTCCGGGATTACTTCGCCTGTCG
TGAATTTTCCTTTACGATAAATGATGACATCTACATACGATATCAATCAT
TCCGGGATGCCTCCGAAATGGAGTCAGCGATACAGAAGAAACAACCTCAC
AAAATAGACATAGGGGCCGTGTTTACGCTGCCTCCCAAAGATCATCACAC
TGTTAAAGCAGAGGCCTTCAAACCCGTGGAACGCGAGCTCATTTTCGACA
TCGACATGACAGACTACGACGACATCCGAAGCTGTTGCACAGGGGCCAAA
ATTTGTCCCAAGTGCTGGGTCTTCATGACCATGGCCGTGAAAGTCGTGGA
CACCGCCTTACGGGAGGATTTCGGGTTTCGATATATTTTGTGGGTGTACT
CCGGTCGGCGCGGCGTGCATTGTTGGGTGTGCGATCCCAACGCCCGTGCC
TTGTCGAACGATGGGCGTAGCGCCGTGGTGGAATACTTGTCGTTGCCGCG
GGGAAacgagaagagcaaggggaagaacGGGGGGTTGTCCTGGCCCCTCC
ATCCGTCCTTTACGCGGGCTTTTGACATCTTGGAGCCCATGTTCGAGTCA
GGGGTCCTtggggaggcaggacagGGGGTGTTGGACTCAGAGAATTCGTG
GGACACCCTTTTGGACACGCTCCCCGACGAAGACCTGGCCAACCGGCTTC
GAAGGGAAATGCGACGCTTGACCAACGCGCAGGACCGATGGCTCGAGATC
AAATCCCAGGTGCGCGCGGCAAGTTCTGCCCATGCCAGTGGAAACGCCCG
CCGGCAGAGTCGTGGTGGCCGGGCAGGGAACGGTCTCTTCGCCCTCGACC
TGTGGAAGTACGAGGTGGTTTTCCAGTATTGCTACCCTCGGTTGGACGTG
AACGTGTCGAAGGGCACCAACCACTTGCTCAAATCGCCCTTCGCGGTCCA
CCCGAAGACGGGACGTGTGTGCGTGCCCATTGATCCCGAGGATGTGGACA
ATTTCGACCCATTTCGGGTCCCCACGCtgaaggccttggccgcgcaGATT
GACGCCTACGATGCCCAGAATGCTCAAAATGCATCGGCCAAAGCACTGCC
CGATTACAAAAAAACGGAGCTGAAAAGCGCCGTGGAGCTGCTGGAGCGAT
GTGTGGTGGATCCTGTGGCCCTGGCTACGAAGAGGCGATTGAAactggag
agggagaaggaggctgccATGATCGGAGACTTCTAG

Synonyms

Publications