rna716, rna716 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna716
Unique Name	rna716
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1980
Alignment location	CM002456.1:250755..251338 +

Link to JBrowse

Properties


Property Name	Value
Product	smr domain-containing
Orig transcript id	gnl\|cribi\|Naga_101782g2.1193.mrna
Orig protein id	gnl\|cribi\|Naga_101782g2.1193
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:250755..251338 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101782g2	gene687	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna716	rna716-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29956.1	cds716	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:250755..251338+
coding sequence from alignment at CM002456.1:250755..251338+

mRNA sequence

>rna716 ID=rna716|Name=rna716|organism=Nannochloropsis gaditana|type=mRNA|length=1980bp
ATGAAGATCGGATCGCTCGCCCTCCGCTTGAACGCCCGAGTCGGGTCGGA
ACCAGGGCTACTTGCACGCCCTCTTTATGCCATTCCCGGACATCGACATG
CACATTCTCGCATTCATAATCACAGTTCTGCTCTTGTAACGGAAGCGGAC
CGGGGTGCGGTAATTTCCCGCCTTGTTTCGGCGTTCGGAAGCATGAACGG
CATTCAACTTACTCCTTTCCAACTGTGGCTGCATGACAGCTTGAGAACGA
TGGGTCTAGATGATGGCACCTTTGCCCCGTACATCCAAGCTCTCCTGATG
GAAGCGTCAGAAGGTGGAGTGTATGAGAATGGTGGCGTAGAAATGACATT
GGCATCCCTTTGTCCACCGGAGCAGGAGCCGCAGTGGAAATCCTTTTGCC
AAGATTTGCTCCTCTACAGCGCCCAACCACATCTTCTCTCGGCTTCGGCG
GGTCATTCCCCCCCCTCGGTGGCTTCTTCCCCTGCCAACACCTTGTCTCC
CTCCCCCGAGTCGCGCGTGCCGTCCTCCGTCTCCGCAACCACCCTCAACA
CCTTCTCGCCCGTATCTTCCACCTCACTCACGGCCTCCCCTTCGCTTCTG
TCTTCGTCTTCGCGTCCTTTCCTTCCCAAGCGCCAGCAGTCCCAGGAGCA
CGGGCAGCAACCATCATCCCTTGTAGGGTCAGTGACACACGACCATGCAC
CGGGCCGGGAGGAGGACGATCCTTTCTCCCTCGACACCCTCTCGGCGCGG
GTCGCCTCGTCCTGCCTGGGCGAAGACGAAGAGGAGCAGGAGGCAGTCGG
ACCCCCCACGCAGTTTCCGGACGCGCGGCTTGGCCCCCCCGATCCCCTCT
ACCCTCAGCCAGCCGAGGCAAGCCGCCACATGCACGTGGCTCCCATGGGA
GAACATGGACGGGGACACCTGGGCAGTCTGCAAGCTTCGCCCTCCTTCCA
CCCCTATTACTCACCCATGGCCACCCCCTACCTCCCCGGAGGCCCGTCTA
ACCCACTTCCCCCCCCCGAGCTGCCCTCCTTGCAGCAACTGCAAGATCGA
TCGGACCTGGCCCCTTTCCAACCCACACAGCTCCCTGAGCCGCACCGGCA
GGGATCTTATCCTCACCATTTGCACCGGCATGGGAGCAGCGAGCCGGCGG
GGGGGGGGGGCTCTGCCCGAGGGGTGGACGATGCCTACGGCCTGCCTGAC
TTTGGTTTCTTGGACGAGGTGGACGAGGGCGGGGCGGAGGAGGAGGGAGG
GAGGGAGGACTTGTGGGAGGCGCAGGCCTTGGAGATGGCGGCGGTGGAGG
AAGACGAGAGCTACATTTGGGAGATGGGCGTCAACACCCTCCTGGGAAGT
TTCCCTCACTGTGCCCCCGAGGCCTTGCTGACGGCACTGCTCCGGTGCGA
CCTAGACTTGGAGGAGGCCGTGGCGCGGGTGGAGGAGGCGTTGAAGCCCG
GAGTCGCCCCCTGTCGCTACTATCTGGCAGGCTTCTGCGCCCGATCCGAC
TGTGCCTTCAGCCACGCGATTGCAACAACTACCTGCGTACACTGGCTCTT
GGGGTCGTGTCGTGACGGAATGCTGGACGAGGAAACGCAGCGGCCCCACA
CTTGCCCTTTTCGGCACGATCTCCCTCCCAAGGGAGGTGGGCCGCACGAT
CCCGCCGAAGACAGCTCGGCGGGGAGCTCTTCCTCGTCCTCCTCCACCTC
TTCCTCCTCCTCGTCCTCCTCCGGCCCTCCTTTCAGTGCCACGGACGAAA
GCCACTTCCCTGCCCTCTCCTCCTCCTCCGCCACGACCTCCGCCGCCGCC
TCCCCCTCCACCCCCGGCTCCAACACGCCTGGCAAGTCCTTCTTACAGGT
TGCCCTTACATCCAAACGCACCTCCCTGCCACGGAGGCGCCCAACCGCGT
CGTCCCGCGCCGCCTCCGTCCCCGCCCCGGCCTCGGCAAGGAGGGCCAAT
GCGGCGACGGCCCAGCGAAAGGGGGGATAA

protein sequence of rna716

>rna716-protein ID=rna716-protein|Name=rna716|organism=Nannochloropsis gaditana|type=polypeptide|length=142bp
MKERHRAAGMAIFAARNPSERRIYQEGILDLHGLHVAEATEAVEELLPGI
FAGGKVTEVTLITGTGKHSGGVSQHQARLFPAMEAYLQDLEAMVGEGRGR
RGGSEGGRLYKCITDPQGYQAGLKVCLSRPLMEHWGLGELTR

mRNA from alignment at CM002456.1:250755..251338+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna716 ID=rna716|Name=rna716|organism=Nannochloropsis gaditana|type=mRNA|length=584bp|location=Sequence derived from alignment at CM002456.1:250755..251338+ (Nannochloropsis gaditana)
CAGCCAAAGCCTTGGGCGCCGAGGGTCGGCGCTGGAATGCGACGATGAAA
GAGCGCCATCGGGCGGCAGGCATGGCCATTTTCGCCGCCCGGAACCCGTC
CGAGAGGAGGATTTATCAAGAAGGGATCCTGGATCTGCATGGACTGCACG
TGGCGGAAGCCaccgaggcggtggaggagttgcTTCCGGGTATCTTTGCG
GGGGGCAAAGTGACGGAAGTGACGCTCATTACCGGGACGGGCAAACACTC
CGGAGGGGTTTCGCAGCACCAAGCCCGTTTGTTCCCAGCCATGGAAGCCT
ACCTACAGGATTTGGAAGccatggtgggcgaggggagagggaggagggga
gggagcgagggagggagactgTACAAGTGCATCACGGACCCGCAGGGCTA
TCAAGCAGGGTTGAAGGTGTGCTTGTCCCGACCATTGATGGAGCACTGGG
GCCTGGGCGAGCTCACCAGGTAGCGCGACCGGAGCCACGAAAAAGAAACC
TTCTTAACCTCTTCCATTGCACGTTGGTGTCTTTATTTTGGGCTGTGCCA
GATGCTTCATGTGTACTTCCGGGTTGGCTTTCCC

Coding sequence (CDS) from alignment at CM002456.1:250755..251338+

>rna716 ID=rna716|Name=rna716|organism=Nannochloropsis gaditana|type=CDS|length=429bp|location=Sequence derived from alignment at CM002456.1:250755..251338+ (Nannochloropsis gaditana)
ATGAAAGAGCGCCATCGGGCGGCAGGCATGGCCATTTTCGCCGCCCGGAA
CCCGTCCGAGAGGAGGATTTATCAAGAAGGGATCCTGGATCTGCATGGAC
TGCACGTGGCGGAAGCCaccgaggcggtggaggagttgcTTCCGGGTATC
TTTGCGGGGGGCAAAGTGACGGAAGTGACGCTCATTACCGGGACGGGCAA
ACACTCCGGAGGGGTTTCGCAGCACCAAGCCCGTTTGTTCCCAGCCATGG
AAGCCTACCTACAGGATTTGGAAGccatggtgggcgaggggagagggagg
aggggagggagcgagggagggagactgTACAAGTGCATCACGGACCCGCA
GGGCTATCAAGCAGGGTTGAAGGTGTGCTTGTCCCGACCATTGATGGAGC
ACTGGGGCCTGGGCGAGCTCACCAGGTAG

Synonyms

Publications