EWM29956.1, cds716 (CDS) Nannochloropsis gaditana

Overview
NameEWM29956.1
Unique Namecds716
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:250799..251227 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29956.1
Productsmr domain-containing
Orig transcript idgnl|cribi|Naga_101782g2.1193.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:250799..251227 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR002625Smr/MutS2_C
Homology
BLAST of EWM29956.1 vs. NCBI_GenBank
Match: gi|585112550|gb|EWM29956.1| (smr domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 287.73 bits (735), Expect = 2.176e-98
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
Query:    1 MKERHRAAGMAIFAARNPSERRIYQEGILDLHGLHVAEATEAVEELLPGIFAGGKVTEVTLITGTGKHSGGVSQHQARLFPAMEAYLQDLEAMVGEGRGRRGGSEGGRLYKCITDPQGYQAGLKVCLSRPLMEHWGLGELTR 142
            MKERHRAAGMAIFAARNPSERRIYQEGILDLHGLHVAEATEAVEELLPGIFAGGKVTEVTLITGTGKHSGGVSQHQARLFPAMEAYLQDLEAMVGEGRGRRGGSEGGRLYKCITDPQGYQAGLKVCLSRPLMEHWGLGELTR
Sbjct:    1 MKERHRAAGMAIFAARNPSERRIYQEGILDLHGLHVAEATEAVEELLPGIFAGGKVTEVTLITGTGKHSGGVSQHQARLFPAMEAYLQDLEAMVGEGRGRRGGSEGGRLYKCITDPQGYQAGLKVCLSRPLMEHWGLGELTR 142          
BLAST of EWM29956.1 vs. NCBI_GenBank
Match: gi|325192207|emb|CCA26658.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 74.3294 bits (181), Expect = 9.079e-13
Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 0
Query:    1 MKERHRAAGMAIFAARNPSERRIYQEGILDLHGLHVAEATEAVEELLPGIFAGGKVTEVTLITGTGKHSGGVSQHQARLFPAMEAYLQDLEAMVGEGRGRRGGSEG 106
            MK+ H  A   IF +RNP E+ +Y++ ++DLHGLHV EA E +   LP +   G  T V ++TGTG HS G  Q+ ARL PA+E +L+  E    E    R G  G
Sbjct:  433 MKKLHLMAAEVIFKSRNPQEQ-VYRDRLMDLHGLHVVEAVEFLRSWLPQLAEDGLDT-VRIVTGTGHHSRG-PQNTARLLPAVEHFLRT-EGYESESVADRKGYVG 534          
BLAST of EWM29956.1 vs. NCBI_GenBank
Match: gi|635362149|emb|CCI49043.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 72.7886 bits (177), Expect = 3.493e-12
Identity = 46/127 (36.22%), Postives = 70/127 (55.12%), Query Frame = 0
Query:    1 MKERHRAAGMAIFAARNPSERRIYQEGILDLHGLHVAEATEAVEELLPGIFAGGKVTEVTLITGTGKHSGGVSQHQARLFPAMEAYLQDLEAMVGEGRGRRGGSEGGRLYKCITDPQGYQAGLKVCL 127
            MK+ H  A   IF +RNP  +++Y++ ++DLHGLHV EA   ++  LP +   G +  + ++TG G HS G  Q+ ARL PA+E +L+               SEG   YK + D +G+   L+V L
Sbjct:  895 MKKLHLMAAEVIFKSRNP-HKQVYRDRLMDLHGLHVVEAVAFLQSWLPQLAEDG-LELIRIVTGAGHHSKG-PQNTARLLPAVEQFLR---------------SEGYE-YKSVVDRKGHVGMLQVNL 1002          
BLAST of EWM29956.1 vs. NCBI_GenBank
Match: gi|669144408|ref|XP_008607766.1| (hypothetical protein SDRG_03897 [Saprolegnia diclina VS20] >gi|530740700|gb|EQC38942.1| hypothetical protein SDRG_03897 [Saprolegnia diclina VS20])

HSP 1 Score: 72.0182 bits (175), Expect = 5.965e-12
Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = 0
Query:    1 MKERHRAAGMAIFAARNPSERRIYQEGILDLHGLHVAEATEAVEELLPGIFAGGKVTEVTLITGTGKHSGGVSQHQARLFPAMEAYL 87
            MK+ H  A   IF ARNPS  R   +G+LDLHGLHVAEA E + +LLP + A      + ++TG+G HS     H  RL PA+E +L
Sbjct:  391 MKDAHYEAASLIFEARNPSYER---DGLLDLHGLHVAEALELLSQLLPTVTAET----ICIVTGSGHHS-----HHVRLKPAVERFL 465          
BLAST of EWM29956.1 vs. NCBI_GenBank
Match: gi|970659409|gb|KUF97047.1| (Membrane metallo-endopeptidase 1 [Phytophthora nicotianae])

HSP 1 Score: 71.2478 bits (173), Expect = 7.093e-12
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 0
Query:    1 MKERHRAAGMAIFAARNPSERRIYQEGILDLHGLHVAEATEAVEELLPGIFAGGKVTEVTLITGTGKHSGGVSQHQARLFPAMEAYL 87
            MK  H  A   IF +RNP   ++Y + ++DLHGLHVAEA E + ++LP +   G V  + L+TG+G HS G     ARL PA+E +L
Sbjct:  233 MKNFHFLAASEIFESRNPP-NQLYMDRMMDLHGLHVAEAVEFLTQMLPKLADEG-VDSIYLVTGSGHHSKG-PDGNARLLPAVERFL 316          
BLAST of EWM29956.1 vs. NCBI_GenBank
Match: gi|695413549|ref|XP_009526064.1| (hypothetical protein PHYSODRAFT_314545 [Phytophthora sojae] >gi|348677189|gb|EGZ17006.1| hypothetical protein PHYSODRAFT_314545 [Phytophthora sojae])

HSP 1 Score: 71.2478 bits (173), Expect = 8.891e-12
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 0
Query:    1 MKERHRAAGMAIFAARNPSERRIYQEGILDLHGLHVAEATEAVEELLPGIFAGGKVTEVTLITGTGKHSGGVSQHQARLFPAMEAYL 87
            MK  H  A   IF +RNP   ++Y + ++DLHGLHVAEA E + ++LP + A   V  + L+TG+G HS G     ARL PA+E +L
Sbjct:  493 MKNFHFLAASEIFESRNPP-NQLYMDRMMDLHGLHVAEAVEFLTQMLPKL-ADESVDSIYLVTGSGHHSKG-PDGNARLLPAVERFL 576          
BLAST of EWM29956.1 vs. NCBI_GenBank
Match: gi|567945342|gb|ETK71153.1| (hypothetical protein, variant 1 [Phytophthora parasitica] >gi|567945343|gb|ETK71154.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|570935292|gb|ETP00549.1| hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >gi|570935293|gb|ETP00550.1| hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 70.4774 bits (171), Expect = 1.825e-11
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 0
Query:    1 MKERHRAAGMAIFAARNPSERRIYQEGILDLHGLHVAEATEAVEELLPGIFAGGKVTEVTLITGTGKHSGGVSQHQARLFPAMEAYL 87
            MK  H  A   IF +RNP  + +Y + ++DLHGLHVAEA E + ++LP +   G V  + L+TG+G HS G     ARL PA+E +L
Sbjct:  392 MKNFHFLAASEIFESRNPPNQ-LYMDRMMDLHGLHVAEAVEFLTQMLPKLADEG-VDSIYLVTGSGHHSKG-PDGNARLLPAVERFL 475          
BLAST of EWM29956.1 vs. NCBI_GenBank
Match: gi|675195093|ref|XP_008906431.1| (hypothetical protein PPTG_12004 [Phytophthora parasitica INRA-310] >gi|566023151|gb|ETI46062.1| hypothetical protein, variant 1 [Phytophthora parasitica P1569] >gi|566023152|gb|ETI46063.1| hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|567973952|gb|ETL24600.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|567973953|gb|ETL24601.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568018401|gb|ETL92575.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568018402|gb|ETL92576.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568048837|gb|ETM45865.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568048838|gb|ETM45866.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568093347|gb|ETN08143.1| hypothetical protein PPTG_12004 [Phytophthora parasitica INRA-310] >gi|570326798|gb|ETO74746.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976] >gi|570326799|gb|ETO74747.1| hypothetical protein, variant 2 [Phytophthora parasitica P1976] >gi|570984288|gb|ETP43933.1| hypothetical protein, variant 1 [Phytophthora parasitica P10297] >gi|570984289|gb|ETP43934.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297])

HSP 1 Score: 70.4774 bits (171), Expect = 1.825e-11
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 0
Query:    1 MKERHRAAGMAIFAARNPSERRIYQEGILDLHGLHVAEATEAVEELLPGIFAGGKVTEVTLITGTGKHSGGVSQHQARLFPAMEAYL 87
            MK  H  A   IF +RNP  + +Y + ++DLHGLHVAEA E + ++LP +   G V  + L+TG+G HS G     ARL PA+E +L
Sbjct:  392 MKNFHFLAASEIFESRNPPNQ-LYMDRMMDLHGLHVAEAVEFLTQMLPKLADEG-VDSIYLVTGSGHHSKG-PDGNARLLPAVERFL 475          
BLAST of EWM29956.1 vs. NCBI_GenBank
Match: gi|970633613|gb|KUF79193.1| (NEDD4-binding protein 2 [Phytophthora nicotianae] >gi|970642341|gb|KUF84043.1| NEDD4-binding protein 2 [Phytophthora nicotianae])

HSP 1 Score: 70.4774 bits (171), Expect = 2.064e-11
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 0
Query:    1 MKERHRAAGMAIFAARNPSERRIYQEGILDLHGLHVAEATEAVEELLPGIFAGGKVTEVTLITGTGKHSGGVSQHQARLFPAMEAYL 87
            MK  H  A   IF +RNP  + +Y + ++DLHGLHVAEA E + ++LP +   G V  + L+TG+G HS G     ARL PA+E +L
Sbjct:  463 MKNFHFLAASEIFESRNPPNQ-LYMDRMMDLHGLHVAEAVEFLTQMLPKLADEG-VDSIYLVTGSGHHSKG-PDGNARLLPAVERFL 546          
BLAST of EWM29956.1 vs. NCBI_GenBank
Match: gi|567945341|gb|ETK71152.1| (hypothetical protein L915_21532 [Phytophthora parasitica] >gi|570935291|gb|ETP00548.1| hypothetical protein F441_22033 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 70.4774 bits (171), Expect = 2.112e-11
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 0
Query:    1 MKERHRAAGMAIFAARNPSERRIYQEGILDLHGLHVAEATEAVEELLPGIFAGGKVTEVTLITGTGKHSGGVSQHQARLFPAMEAYL 87
            MK  H  A   IF +RNP  + +Y + ++DLHGLHVAEA E + ++LP +   G V  + L+TG+G HS G     ARL PA+E +L
Sbjct:  475 MKNFHFLAASEIFESRNPPNQ-LYMDRMMDLHGLHVAEAVEFLTQMLPKLADEG-VDSIYLVTGSGHHSKG-PDGNARLLPAVERFL 558          
The following BLAST results are available for this feature:
BLAST of EWM29956.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112550|gb|EWM29956.1|2.176e-98100.00smr domain-containing [Nannochloropsis gaditana][more]
gi|325192207|emb|CCA26658.1|9.079e-1343.40conserved hypothetical protein [Albugo laibachii N... [more]
gi|635362149|emb|CCI49043.1|3.493e-1236.22unnamed protein product [Albugo candida][more]
gi|669144408|ref|XP_008607766.1|5.965e-1247.13hypothetical protein SDRG_03897 [Saprolegnia dicli... [more]
gi|970659409|gb|KUF97047.1|7.093e-1244.83Membrane metallo-endopeptidase 1 [Phytophthora nic... [more]
gi|695413549|ref|XP_009526064.1|8.891e-1244.83hypothetical protein PHYSODRAFT_314545 [Phytophtho... [more]
gi|567945342|gb|ETK71153.1|1.825e-1144.83hypothetical protein, variant 1 [Phytophthora para... [more]
gi|675195093|ref|XP_008906431.1|1.825e-1144.83hypothetical protein PPTG_12004 [Phytophthora para... [more]
gi|970633613|gb|KUF79193.1|2.064e-1144.83NEDD4-binding protein 2 [Phytophthora nicotianae] ... [more]
gi|567945341|gb|ETK71152.1|2.112e-1144.83hypothetical protein L915_21532 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna716rna716Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications