rna713, rna713 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna713
Unique Name	rna713
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	342
Alignment location	CM002456.1:243824..247060 +

Link to JBrowse

Properties


Property Name	Value
Product	Endonuclease/exonuclease/phosphatase
Orig transcript id	gnl\|cribi\|Naga_100567g2.2822.mrna
Orig protein id	gnl\|cribi\|Naga_100567g2.2822
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:243824..247060 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100567g2	gene684	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna713	rna713-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29958.1	cds713	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:243824..247060+
coding sequence from alignment at CM002456.1:243824..247060+

mRNA sequence

>rna713 ID=rna713|Name=rna713|organism=Nannochloropsis gaditana|type=mRNA|length=342bp
ATGGTCACCGCCATGGAGAAAGCTTCGGGCCGAAAGATCAATTACGTGAT
TGGGGAGCGGCGACCGGGGGACCTCGACGAAGTCTACTCTGACCCCAGCA
AGGCAGAGCGAGAATTGGGCTGGAAAGCTACCCGGGGCTTGGACGACATG
ACCCGGGACTTATGGCGGTGGCAGCAGCAGAATCCGCAGGCAACGGCTGA
AGGAGCATTTCGATTGAATCCTGGAGCATTGATCGCGATGAAAGGCAGGT
CATGGTCAGGTTGGAAGTGGCTGGAGGGTGGGATGGGGTTGGAGCTTTGG
TATAAAGGGATGAAAAGATATGGCCTGCTAAATCGAGTATAA

protein sequence of rna713

>rna713-protein ID=rna713-protein|Name=rna713|organism=Nannochloropsis gaditana|type=polypeptide|length=775bp
MLPMPLMSSAAKSLSFTLQVSQYNILAANLANNLRPWFWYGFRGVSPTVP
HYTGDAFDEARFQTFGAGRSKLFIDLWCVATKYLRLFDHEPTNPYRIDVL
THADAAKDVHTEGPAVALKCLLETATFDFFHRNINNNTQGNTYLAHYLFD
RKNPDFQVVEHALLFPLGYSLSLDDWKEAEGLRKDIDKTLAGSVDRAAAI
DRFNVWLRRVLVLRRRHSHHKGVLEHFELSDGRIEEEFREVALEMATFMS
LSAADMDRISRFQHRMEWNLRGPAIMEVIEGLQADVLGLEEVDKVEDVRE
HLEARGLRMAVYKHRHARATGDGCAIFYNPRVLRLCRLGGVPQEEEEAIH
GGALGEMDGKGPRAVAVVRYSAEAYMVCSEEKHQQHGHHQPHSSKRGEYQ
GQCQQQQPTANGIPDCPTARRRGEVDADALPLFRSTLKMQGRIVAGETSD
NGEGGADEASMLKGQGGEEGVSEDFVDSWTFTAPEGLTRCEGKSWDDWVA
VVALLEHRATGQRLLTVCSQLAHSPELRAAPGVRAVQVRELERALREIRK
VWGLVETEGGEKGAVERQEQRNRAWGQVPTLIMMDGNEAPFLGPEEPSLA
NEGRTPDGRTGETEVERKKVYTPMYLAMREEMGYVDVLGEEFGPTSITLQ
GRSRVDYIWVTGEGQRVSGKKSWETGDGLAIGKERREGVFLEDVDVSPVM
DVRLAGEEGGQMFLVSKGEEREKAVYGLPLPAVEDQECIPSDHVPVSAKL
RFRIERSKHGGSGKSNDKLEVLREN

mRNA from alignment at CM002456.1:243824..247060+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna713 ID=rna713|Name=rna713|organism=Nannochloropsis gaditana|type=mRNA|length=3237bp|location=Sequence derived from alignment at CM002456.1:243824..247060+ (Nannochloropsis gaditana)
ACACCGCGACCCCAAGCAGTAATTGCCGGCAACCATGTGCCAGGAAAATG
CCTGGTTGCCTGCGCATGACGAATGATACGGGGGGAATCACACTCAGAAC
TGAGGAAGCCATGAGCTTCAAATTAATAGGACGCGGTTGTATTCGACAAT
TAGTGGCTATCGAAGGTGCGCAAGGCGCTTAAGTAACTATTCATTTGTTC
TGAAAGGATAGATCTGTAAAATAATCTCGAAATCTGTGTACATCCATTAT
TGACAGCAATAACTACAAGTGTGCTCAGCATGTTACCCATGCCTTTGATG
TCATCGGCGGCCAAAAGCTTGTCTTTTACCCTCCAGGTTTCCCAATACAA
CATCCTTGCCGCCAACTTGGCCAACAATCTTCGGGTAGGGGCAATTTCAT
GTCTTTCTTATGTATCATAAATCAAAGTGTACAAAGTAATAGAAGCTCTA
TGACTTGATGCTGTGGCTCCATGTCTTTATGTCGACGTATCCTGTTTCTA
ACATATTTAAGATCTGTTTATTCAATCTTCTGTTCTCATGAATCACACTa
tatttcctcctcttcttgtcgAAATCATGTTTCTTGAAAGCCATGGTTCT
GGTACGGATTTCGGGGTGTGTCTCCTACTGTCCCTCATTACACGGGAGAC
GCCTTTGACGAAGCTCGCTTTCAAACATTTGGAGCGGGACGCAGCAAGCT
TTTTATTGACCTCTGGTGTGTGGCTACGAAGTACCTGCGCTTGTTCGATC
ACGAGCCCACCAATCCATACCGCATCGACGTCTTGACTCATGCGGATGCA
GCGAAGGATGTGCATACGGAAGGTCCAGCAGTTGCGCTCAAGTGCCTGTT
GGAGACGGCTACGTTCGATTTTTTTCATCGCAACATCAACAATAATACTC
AGGGGAACACATATTTGGCCCATTATCTTTTTGATCGGAAGAATCCGGAC
TTTCAAGTCGTGGAGCACGCTTTGCTTTTTCCGCTGGGGTACAGTCTTTC
TCTGGACGATTGGAAAGAAGCCGAAGGCCTCAGGAAAGACATAGACAAGA
CCCTGGCAGGCTCGGTGGACCGCGCCGCGGCGATCGACCGTTTTAATGTG
TGGTTACGTCGGGTCCTCGTACTACGCCGGCGGCATAGTCACCACAAGGG
GGTTCTGGAGCATTTCGAACTGTCGGACGGccggatcgaggaggagtTTC
GGGAAGTGGCTCTGGAAATGGCGACATTTATGAGCCTGAGCGCGGCAGAC
ATGGACCGGATCTCACGTTTTCAGCATAGAATGGAGTGGAATCTCCGGGG
TCCGGCCATCATGGAGGTGATCGAGGGGCTGCAGGCGGACGTGCTGGGCT
TAGAGGAAGTAGACAaagtggaggacgtgagggagCACCTGGAAGCACGA
GGCCTGCGGATGGCCGTGTACAAACATCGGCATGCACGGGCAACGGGGGA
CGGCTGTGCTATATTCTACAATCCCCGTGTTTTGCGCCTGTGCCGGCTCG
GAGGCGTTcctcaggaggaggaggaggcgattcACGGCGGGGCGCTCGGG
GAGATGGATGGAAAGGGGCCAAGGGCCGTGGCAGTCGTGCGTTACAGTGC
AGAAGCGTACATGGTATGTTCCGAAGAAAAGCACCAACAACATGGACACC
ACCAACCGCATTCCTCTAAAAGAGGAGAATATCAAGGACAatgccagcag
cagcagccaacCGCCAATGGCATCCCTGATTGCCCGACGGCCCGTAGGCG
TGGGGAGGTCGACGCAGATGCCTTACCCCTCTTCCGCTCCACATTAAAGA
TGCAGGGGAGGATCGTGGCGGGCGAGACGAGCGacaatggggagggaggg
gcagatgAGGCAAGCATGTTGAAggggcagggtggggaggagggagtttC
GGAGGATTTCGTGGATTCCTGGACCTTCACGGCACCAGAAGGGTTGACCA
GATGCGAGGGAAAGTCGTGGGACGATTGGGTGGCTGTGGTCGCCTTATTG
GAGCACCGCGCGACGGGGCAACGACTCTTGACCGTGTGCTCGCAGTTGGC
CCACTCTCCCGAACTGCGGGCGGCGCCAGGGGTGCGGGCAGTCCAGGTCC
GGGAATTAGAGCGGGCATTGCGAGAAATTCGAAAGGTCTGGGGTCTGGta
gagacggagggaggggaaaagggggcggtggaaaggcaggagcaAAGGAA
TCGGGCGTGGGGGCAGGTCCCCACCTTGATCATGATGGACGGAAACGAAG
CCCCATTCTTAGGCCCGGAAGAGCCTTCTTTGGCAAACGAGGGAAGAACT
CCGGATgggcggacgggggagacggaggtcGAGAGAAAGAAGGTTTACAC
ACCTATGTATCTtgcgatgagggaggagatggggtaTGTGGACGTTTTGG
GGGAGGAGTTCGGTCCCACCAGTATCACCTTGCAAGGCCGGTCTCGGGTC
GACTACATTTGGGTCACGGGCGAGGGACAGAGAGTTTCCGGAAAAAAAAG
TTGGGAGACGGGTGACGGGTTGGCGATAGgcaaagagagaagggaggggg
tatTTCTTGAAGATGTAGATGTCTCCCCTGTCATGGATGTCCGtttggcg
ggggaggaaggtgggcaAATGTTTTTAGTAAgtaaaggggaggagaggga
aaaggcggtgTACGGTCTGCCACTGCCAGCCGTAGAGGACCAGGAATGCA
TCCCCTCCGATCATGTCCCCGTCTCAGCTAAGCTACGATTTCGGATTGAG
AGGTCCAAGCATGGTGGAAGTGGAAAGAGTAATGACAAGCTGGAAGTATT
AAGGGAAAATTGAGGCAGATCATGGCCTTTTAAATGCCGTACAAATTGCG
CGTTTGTACAGATTGGCCTGTATATTTTGATGAGTTCCTGCCTTGTGTCA
TCTGTTAACTATCCAGAGCCGTTCGCAATGTGTTGACATTCAGCTCTTCC
CCAGGAGTCCGGTCTTAAATGGGCAAAGTACGGGGAGTACGCATGCAAGA
CGATCGAGATTGCCAATTCGGAAGTCTTAATGTCGCACGaaaccccccca
aaaaaagaagTGCCTGAGCACTCGCAATCGtttatatatacatatatttG
GTACCAACTTGCTACAAAGGCTTAATTTTTTCATACTTTTAGTGGCTCAT
TCGGTAGTCTAGCTCGACCTGGATGATCCCAGATCCTACAAGCTTGTCAT
GCGCTACTTAACACGAGAAACATTCAAAATAAAACCC

Coding sequence (CDS) from alignment at CM002456.1:243824..247060+

>rna713 ID=rna713|Name=rna713|organism=Nannochloropsis gaditana|type=CDS|length=4656bp|location=Sequence derived from alignment at CM002456.1:243824..247060+ (Nannochloropsis gaditana)
ATGTTACCCATGCCTTTGATGTCATCGGCGGCCAAAAGCTTGTCTTTTAC
CCTCCAGGTTTCCCAATACAACATCCTTGCCGCCAACTTGGCCAACAATC
TTCGGCCATGGTTCTGGTACGGATTTCGGGGTGTGTCTCCTACTGTCCCT
CATTACACGGGAGACGCCTTTGACGAAGCTCGCTTTCAAACATTTGGAGC
GGGACGCAGCAAGCTTTTTATTGACCTCTGGTGTGTGGCTACGAAGTACC
TGCGCTTGTTCGATCACGAGCCCACCAATCCATACCGCATCGACGTCTTG
ACTCATGCGGATGCAGCGAAGGATGTGCATACGGAAGGTCCAGCAGTTGC
GCTCAAGTGCCTGTTGGAGACGGCTACGTTCGATTTTTTTCATCGCAACA
TCAACAATAATACTCAGGGGAACACATATTTGGCCCATTATCTTTTTGAT
CGGAAGAATCCGGACTTTCAAGTCGTGGAGCACGCTTTGCTTTTTCCGCT
GGGGTACAGTCTTTCTCTGGACGATTGGAAAGAAGCCGAAGGCCTCAGGA
AAGACATAGACAAGACCCTGGCAGGCTCGGTGGACCGCGCCGCGGCGATC
GACCGTTTTAATGTGTGGTTACGTCGGGTCCTCGTACTACGCCGGCGGCA
TAGTCACCACAAGGGGGTTCTGGAGCATTTCGAACTGTCGGACGGccgga
tcgaggaggagtTTCGGGAAGTGGCTCTGGAAATGGCGACATTTATGAGC
CTGAGCGCGGCAGACATGGACCGGATCTCACGTTTTCAGCATAGAATGGA
GTGGAATCTCCGGGGTCCGGCCATCATGGAGGTGATCGAGGGGCTGCAGG
CGGACGTGCTGGGCTTAGAGGAAGTAGACAaagtggaggacgtgagggag
CACCTGGAAGCACGAGGCCTGCGGATGGCCGTGTACAAACATCGGCATGC
ACGGGCAACGGGGGACGGCTGTGCTATATTCTACAATCCCCGTGTTTTGC
GCCTGTGCCGGCTCGGAGGCGTTcctcaggaggaggaggaggcgattcAC
GGCGGGGCGCTCGGGGAGATGGATGGAAAGGGGCCAAGGGCCGTGGCAGT
CGTGCGTTACAGTGCAGAAGCGTACATGGTATGTTCCGAAGAAAAGCACC
AACAACATGGACACCACCAACCGCATTCCTCTAAAAGAGGAGAATATCAA
GGACAatgccagcagcagcagccaacCGCCAATGGCATCCCTGATTGCCC
GACGGCCCGTAGGCGTGGGGAGGTCGACGCAGATGCCTTACCCCTCTTCC
GCTCCACATTAAAGATGCAGGGGAGGATCGTGGCGGGCGAGACGAGCGac
aatggggagggaggggcagatgAGGCAAGCATGTTGAAggggcagggtgg
ggaggagggagtttCGGAGGATTTCGTGGATTCCTGGACCTTCACGGCAC
CAGAAGGGTTGACCAGATGCGAGGGAAAGTCGTGGGACGATTGGGTGGCT
GTGGTCGCCTTATTGGAGCACCGCGCGACGGGGCAACGACTCTTGACCGT
GTGCTCGCAGTTGGCCCACTCTCCCGAACTGCGGGCGGCGCCAGGGGTGC
GGGCAGTCCAGGTCCGGGAATTAGAGCGGGCATTGCGAGAAATTCGAAAG
GTCTGGGGTCTGGtagagacggagggaggggaaaagggggcggtggaaag
gcaggagcaAAGGAATCGGGCGTGGGGGCAGGTCCCCACCTTGATCATGA
TGGACGGAAACGAAGCCCCATTCTTAGGCCCGGAAGAGCCTTCTTTGGCA
AACGAGGGAAGAACTCCGGATgggcggacgggggagacggaggtcGAGAG
AAAGAAGGTTTACACACCTATGTATCTtgcgatgagggaggagatggggt
aTGTGGACGTTTTGGGGGAGGAGTTCGGTCCCACCAGTATCACCTTGCAA
GGCCGGTCTCGGGTCGACTACATTTGGGTCACGGGCGAGGGACAGAGAGT
TTCCGGAAAAAAAAGTTGGGAGACGGGTGACGGGTTGGCGATAGgcaaag
agagaagggagggggtatTTCTTGAAGATGTAGATGTCTCCCCTGTCATG
GATGTCCGtttggcgggggaggaaggtgggcaAATGTTTTTAGTAAgtaa
aggggaggagagggaaaaggcggtgTACGGTCTGCCACTGCCAGCCGTAG
AGGACCAGGAATGCATCCCCTCCGATCATGTCCCCGTCTCAGCTAAGCTA
CGATTTCGGATTGAGAGGTCCAAGCATGGTGGAAGTGGAAAGAGTAATGA
CAAGCTGGAAGTATTAAGGGAAAATTGAATGTTACCCATGCCTTTGATGT
CATCGGCGGCCAAAAGCTTGTCTTTTACCCTCCAGGTTTCCCAATACAAC
ATCCTTGCCGCCAACTTGGCCAACAATCTTCGGCCATGGTTCTGGTACGG
ATTTCGGGGTGTGTCTCCTACTGTCCCTCATTACACGGGAGACGCCTTTG
ACGAAGCTCGCTTTCAAACATTTGGAGCGGGACGCAGCAAGCTTTTTATT
GACCTCTGGTGTGTGGCTACGAAGTACCTGCGCTTGTTCGATCACGAGCC
CACCAATCCATACCGCATCGACGTCTTGACTCATGCGGATGCAGCGAAGG
ATGTGCATACGGAAGGTCCAGCAGTTGCGCTCAAGTGCCTGTTGGAGACG
GCTACGTTCGATTTTTTTCATCGCAACATCAACAATAATACTCAGGGGAA
CACATATTTGGCCCATTATCTTTTTGATCGGAAGAATCCGGACTTTCAAG
TCGTGGAGCACGCTTTGCTTTTTCCGCTGGGGTACAGTCTTTCTCTGGAC
GATTGGAAAGAAGCCGAAGGCCTCAGGAAAGACATAGACAAGACCCTGGC
AGGCTCGGTGGACCGCGCCGCGGCGATCGACCGTTTTAATGTGTGGTTAC
GTCGGGTCCTCGTACTACGCCGGCGGCATAGTCACCACAAGGGGGTTCTG
GAGCATTTCGAACTGTCGGACGGccggatcgaggaggagtTTCGGGAAGT
GGCTCTGGAAATGGCGACATTTATGAGCCTGAGCGCGGCAGACATGGACC
GGATCTCACGTTTTCAGCATAGAATGGAGTGGAATCTCCGGGGTCCGGCC
ATCATGGAGGTGATCGAGGGGCTGCAGGCGGACGTGCTGGGCTTAGAGGA
AGTAGACAaagtggaggacgtgagggagCACCTGGAAGCACGAGGCCTGC
GGATGGCCGTGTACAAACATCGGCATGCACGGGCAACGGGGGACGGCTGT
GCTATATTCTACAATCCCCGTGTTTTGCGCCTGTGCCGGCTCGGAGGCGT
TcctcaggaggaggaggaggcgattcACGGCGGGGCGCTCGGGGAGATGG
ATGGAAAGGGGCCAAGGGCCGTGGCAGTCGTGCGTTACAGTGCAGAAGCG
TACATGGTATGTTCCGAAGAAAAGCACCAACAACATGGACACCACCAACC
GCATTCCTCTAAAAGAGGAGAATATCAAGGACAatgccagcagcagcagc
caacCGCCAATGGCATCCCTGATTGCCCGACGGCCCGTAGGCGTGGGGAG
GTCGACGCAGATGCCTTACCCCTCTTCCGCTCCACATTAAAGATGCAGGG
GAGGATCGTGGCGGGCGAGACGAGCGacaatggggagggaggggcagatg
AGGCAAGCATGTTGAAggggcagggtggggaggagggagtttCGGAGGAT
TTCGTGGATTCCTGGACCTTCACGGCACCAGAAGGGTTGACCAGATGCGA
GGGAAAGTCGTGGGACGATTGGGTGGCTGTGGTCGCCTTATTGGAGCACC
GCGCGACGGGGCAACGACTCTTGACCGTGTGCTCGCAGTTGGCCCACTCT
CCCGAACTGCGGGCGGCGCCAGGGGTGCGGGCAGTCCAGGTCCGGGAATT
AGAGCGGGCATTGCGAGAAATTCGAAAGGTCTGGGGTCTGGtagagacgg
agggaggggaaaagggggcggtggaaaggcaggagcaAAGGAATCGGGCG
TGGGGGCAGGTCCCCACCTTGATCATGATGGACGGAAACGAAGCCCCATT
CTTAGGCCCGGAAGAGCCTTCTTTGGCAAACGAGGGAAGAACTCCGGATg
ggcggacgggggagacggaggtcGAGAGAAAGAAGGTTTACACACCTATG
TATCTtgcgatgagggaggagatggggtaTGTGGACGTTTTGGGGGAGGA
GTTCGGTCCCACCAGTATCACCTTGCAAGGCCGGTCTCGGGTCGACTACA
TTTGGGTCACGGGCGAGGGACAGAGAGTTTCCGGAAAAAAAAGTTGGGAG
ACGGGTGACGGGTTGGCGATAGgcaaagagagaagggagggggtatTTCT
TGAAGATGTAGATGTCTCCCCTGTCATGGATGTCCGtttggcgggggagg
aaggtgggcaAATGTTTTTAGTAAgtaaaggggaggagagggaaaaggcg
gtgTACGGTCTGCCACTGCCAGCCGTAGAGGACCAGGAATGCATCCCCTC
CGATCATGTCCCCGTCTCAGCTAAGCTACGATTTCGGATTGAGAGGTCCA
AGCATGGTGGAAGTGGAAAGAGTAATGACAAGCTGGAAGTATTAAGGGAA
AATTGA

Synonyms

Publications