EWM29958.1, cds713 (CDS) Nannochloropsis gaditana

Overview
NameEWM29958.1
Unique Namecds713
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:244103..244207 +
Alignment locationCM002456.1:244414..246636 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29958.1
ProductEndonuclease/exonuclease/phosphatase
Orig transcript idgnl|cribi|Naga_100567g2.2822.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:244103..244207 +
CM002456.1supercontigCM002456.1:244414..246636 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Homology
[Close]
BLAST of EWM29958.1 vs. NCBI_GenBank
Match: gi|585112553|gb|EWM29958.1| (Endonuclease/exonuclease/phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 1599.72 bits (4141), Expect = 0.000e+0
Identity = 775/775 (100.00%), Postives = 775/775 (100.00%), Query Frame = 0 
Query:    1 MLPMPLMSSAAKSLSFTLQVSQYNILAANLANNLRPWFWYGFRGVSPTVPHYTGDAFDEARFQTFGAGRSKLFIDLWCVATKYLRLFDHEPTNPYRIDVLTHADAAKDVHTEGPAVALKCLLETATFDFFHRNINNNTQGNTYLAHYLFDRKNPDFQVVEHALLFPLGYSLSLDDWKEAEGLRKDIDKTLAGSVDRAAAIDRFNVWLRRVLVLRRRHSHHKGVLEHFELSDGRIEEEFREVALEMATFMSLSAADMDRISRFQHRMEWNLRGPAIMEVIEGLQADVLGLEEVDKVEDVREHLEARGLRMAVYKHRHARATGDGCAIFYNPRVLRLCRLGGVPQEEEEAIHGGALGEMDGKGPRAVAVVRYSAEAYMVCSEEKHQQHGHHQPHSSKRGEYQGQCQQQQPTANGIPDCPTARRRGEVDADALPLFRSTLKMQGRIVAGETSDNGEGGADEASMLKGQGGEEGVSEDFVDSWTFTAPEGLTRCEGKSWDDWVAVVALLEHRATGQRLLTVCSQLAHSPELRAAPGVRAVQVRELERALREIRKVWGLVETEGGEKGAVERQEQRNRAWGQVPTLIMMDGNEAPFLGPEEPSLANEGRTPDGRTGETEVERKKVYTPMYLAMREEMGYVDVLGEEFGPTSITLQGRSRVDYIWVTGEGQRVSGKKSWETGDGLAIGKERREGVFLEDVDVSPVMDVRLAGEEGGQMFLVSKGEEREKAVYGLPLPAVEDQECIPSDHVPVSAKLRFRIERSKHGGSGKSNDKLEVLREN 775
            MLPMPLMSSAAKSLSFTLQVSQYNILAANLANNLRPWFWYGFRGVSPTVPHYTGDAFDEARFQTFGAGRSKLFIDLWCVATKYLRLFDHEPTNPYRIDVLTHADAAKDVHTEGPAVALKCLLETATFDFFHRNINNNTQGNTYLAHYLFDRKNPDFQVVEHALLFPLGYSLSLDDWKEAEGLRKDIDKTLAGSVDRAAAIDRFNVWLRRVLVLRRRHSHHKGVLEHFELSDGRIEEEFREVALEMATFMSLSAADMDRISRFQHRMEWNLRGPAIMEVIEGLQADVLGLEEVDKVEDVREHLEARGLRMAVYKHRHARATGDGCAIFYNPRVLRLCRLGGVPQEEEEAIHGGALGEMDGKGPRAVAVVRYSAEAYMVCSEEKHQQHGHHQPHSSKRGEYQGQCQQQQPTANGIPDCPTARRRGEVDADALPLFRSTLKMQGRIVAGETSDNGEGGADEASMLKGQGGEEGVSEDFVDSWTFTAPEGLTRCEGKSWDDWVAVVALLEHRATGQRLLTVCSQLAHSPELRAAPGVRAVQVRELERALREIRKVWGLVETEGGEKGAVERQEQRNRAWGQVPTLIMMDGNEAPFLGPEEPSLANEGRTPDGRTGETEVERKKVYTPMYLAMREEMGYVDVLGEEFGPTSITLQGRSRVDYIWVTGEGQRVSGKKSWETGDGLAIGKERREGVFLEDVDVSPVMDVRLAGEEGGQMFLVSKGEEREKAVYGLPLPAVEDQECIPSDHVPVSAKLRFRIERSKHGGSGKSNDKLEVLREN
Sbjct:    1 MLPMPLMSSAAKSLSFTLQVSQYNILAANLANNLRPWFWYGFRGVSPTVPHYTGDAFDEARFQTFGAGRSKLFIDLWCVATKYLRLFDHEPTNPYRIDVLTHADAAKDVHTEGPAVALKCLLETATFDFFHRNINNNTQGNTYLAHYLFDRKNPDFQVVEHALLFPLGYSLSLDDWKEAEGLRKDIDKTLAGSVDRAAAIDRFNVWLRRVLVLRRRHSHHKGVLEHFELSDGRIEEEFREVALEMATFMSLSAADMDRISRFQHRMEWNLRGPAIMEVIEGLQADVLGLEEVDKVEDVREHLEARGLRMAVYKHRHARATGDGCAIFYNPRVLRLCRLGGVPQEEEEAIHGGALGEMDGKGPRAVAVVRYSAEAYMVCSEEKHQQHGHHQPHSSKRGEYQGQCQQQQPTANGIPDCPTARRRGEVDADALPLFRSTLKMQGRIVAGETSDNGEGGADEASMLKGQGGEEGVSEDFVDSWTFTAPEGLTRCEGKSWDDWVAVVALLEHRATGQRLLTVCSQLAHSPELRAAPGVRAVQVRELERALREIRKVWGLVETEGGEKGAVERQEQRNRAWGQVPTLIMMDGNEAPFLGPEEPSLANEGRTPDGRTGETEVERKKVYTPMYLAMREEMGYVDVLGEEFGPTSITLQGRSRVDYIWVTGEGQRVSGKKSWETGDGLAIGKERREGVFLEDVDVSPVMDVRLAGEEGGQMFLVSKGEEREKAVYGLPLPAVEDQECIPSDHVPVSAKLRFRIERSKHGGSGKSNDKLEVLREN 775
[Close]
BLAST of EWM29958.1 vs. NCBI_GenBank
Match: gi|553180152|ref|XP_005853354.1| (carbon catabolite repressor protein 4-like 4 [Nannochloropsis gaditana CCMP526] >gi|422295708|gb|EKU23007.1| carbon catabolite repressor protein 4-like 4 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1392.87 bits (3604), Expect = 0.000e+0
Identity = 698/775 (90.06%), Postives = 699/775 (90.19%), Query Frame = 0 
Query:    1 MLPMPLMSSAAKSLSFTLQVSQYNILAANLANNLRPWFWYGFRGVSPTVPHYTGDAFDEARFQTFGAGRSKLFIDLWCVATKYLRLFDHEPTNPYRIDVLTHADAAKDVHTEGPAVALKCLLETATFDFFHRNINNNTQGNTYLAHYLFDRKNPDFQVVEHALLFPLGYSLSLDDWKEAEGLRKDIDKTLAGSVDRAAAIDRFNVWLRRVLVLRRRHSHHKGVLEHFELSDGRIEEEFREVALEMATFMSLSAADMDRISRFQHRMEWNLRGPAIMEVIEGLQADVLGLEEVDKVEDVREHLEARGLRMAVYKHRHARATGDGCAIFYNPRVLRLCRLGGVPQEEEEAIHGGALGEMDGKGPRAVAVVRYSAEAYMVCSEEKHQQHGHHQPHSSKRGEYQGQCQQQQPTANGIPDCPTARRRGEVDADALPLFRSTLKMQGRIVAGETSDNGEGGADEASMLKGQGGEEGVSEDFVDSWTFTAPEGLTRCEGKSWDDWVAVVALLEHRATGQRLLTVCSQLAHSPELRAAPGVRAVQVRELERALREIRKVWGLVETEGGEKGAVERQEQRNRAWGQVPTLIMMDGNEAPFLGPEEPSLANEGRTPDGRTGETEVERKKVYTPMYLAMREEMGYVDVLGEEFGPTSITLQGRSRVDYIWVTGEGQRVSGKKSWETGDGLAIGKERREGVFLEDVDVSPVMDVRLAGEEGGQMFLVSKGEEREKAVYGLPLPAVEDQECIPSDHVPVSAKLRFRIERSKHGGSGKSNDKLEVLREN 775
            MLPMPLMSSAAKSLSFTLQVSQYNILAANLANNLR                                              KYLRLFDHEPTNPYRIDVLTHADAAKDVHTEGPAVALKCLLETATFDFFHRNINNNTQGNTYLAHYLFDRKNPDFQVVEHALLFPLGYSLSLDDWKEAEGLRKDID+TLAGSVDRAAAIDRFNVWLRRVLVLRRRHSHHKGVLEHFELSDGRIEEEFREVALEMATFMSLSAADMDRISRFQHRMEWNLRGPAIMEVIEGLQADVLGLEEVDKVEDVREHLEARGLRMAVYKHRHARATGDGCAIFYNPRVLRLCRLGGVPQEEEEAIHGGALGEMDGKGPRAVAVVRYSAEAYM                            QQQPTANGIPDCPTAR RGEVDADALPLFRSTLKMQGRIVAGETSDNGEGGADEASMLKGQGGEEGVSEDFVDSWTFTAPEGLTRCEGKSWDDWVAVVALLEHRATGQRLLTVCSQLAHSPELRAAPGVRAVQVRELERALREIRKVWGLVETEGGEKG VERQEQRNRAWGQVPTLIMMDGNEAPFLGPEEPSLANEGRTPDGRTGETEVERKKVYTPMYLAMREEMGYVDVLGEEFGPTSITLQGRSRVDYIWVTGEGQRVSGKKSWETGDGLAIGKERREGVFLEDVDVSPVMDVRLAGEEGGQMFLVSKGEEREKAVYGLPLPAVEDQECIPSDHVPVSAKLRFRIERSKHGGSGKSNDKLEVLREN
Sbjct:    1 MLPMPLMSSAAKSLSFTLQVSQYNILAANLANNLR----------------------------------------------KYLRLFDHEPTNPYRIDVLTHADAAKDVHTEGPAVALKCLLETATFDFFHRNINNNTQGNTYLAHYLFDRKNPDFQVVEHALLFPLGYSLSLDDWKEAEGLRKDIDETLAGSVDRAAAIDRFNVWLRRVLVLRRRHSHHKGVLEHFELSDGRIEEEFREVALEMATFMSLSAADMDRISRFQHRMEWNLRGPAIMEVIEGLQADVLGLEEVDKVEDVREHLEARGLRMAVYKHRHARATGDGCAIFYNPRVLRLCRLGGVPQEEEEAIHGGALGEMDGKGPRAVAVVRYSAEAYM----------------------------QQQPTANGIPDCPTARTRGEVDADALPLFRSTLKMQGRIVAGETSDNGEGGADEASMLKGQGGEEGVSEDFVDSWTFTAPEGLTRCEGKSWDDWVAVVALLEHRATGQRLLTVCSQLAHSPELRAAPGVRAVQVRELERALREIRKVWGLVETEGGEKGTVERQEQRNRAWGQVPTLIMMDGNEAPFLGPEEPSLANEGRTPDGRTGETEVERKKVYTPMYLAMREEMGYVDVLGEEFGPTSITLQGRSRVDYIWVTGEGQRVSGKKSWETGDGLAIGKERREGVFLEDVDVSPVMDVRLAGEEGGQMFLVSKGEEREKAVYGLPLPAVEDQECIPSDHVPVSAKLRFRIERSKHGGSGKSNDKLEVLREN 701
The following BLAST results are available for this feature:
BLAST of EWM29958.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585112553|gb|EWM29958.1|0.000e+0100.00Endonuclease/exonuclease/phosphatase [Nannochlorop... [more]
gi|553180152|ref|XP_005853354.1|0.000e+090.06carbon catabolite repressor protein 4-like 4 [Nann... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna713rna713Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications