rna712, rna712 (mRNA) Nannochloropsis gaditana

Overview
Namerna712
Unique Namerna712
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1168
Alignment locationCM002456.1:242493..243158 +

Link to JBrowse

Properties
Property NameValue
Productudp-glucose 4-epimerase
Orig transcript idgnl|cribi|Naga_100567g1.2823.mrna
Orig protein idgnl|cribi|Naga_100567g1.2823
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:242493..243158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100567g1gene683Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna712rna712-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29959.1cds712Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna712 ID=rna712|Name=rna712|organism=Nannochloropsis gaditana|type=mRNA|length=1168bp
GGAAGGAAAGGAACCCAGCTATTCAGGACGTTATCACCGCAAAAGTTTAC
GAGGGTGACTAGCGCTTCACTGTACGCACGCTTCGTTTTTGGGGGGCTAT
GCATCGCATAATTGGCATGCTCAGAGTCATTCGCCCAACGCCCCGCCCCT
GGCTTCTCGTAGTGATAAACTTCCGAGTCTCTGCCATTTGAATACATTCC
TCAAAACTTCCTCAACCTCACGGCCTTTATAGTGACAACGAATGTACCGT
GATCGTACGCAGTCGTTAAAACCGCGAGGTGCAGGAGTTGCGACAATTCT
AGTTTTTGAGCCGCAGCACGTGCTTAACGCCCTGGGGAGAACTCACGAGG
AGTACGAGGGAGAAATCCGACATGTTCCTTATACCCTTCACACGGAGAAC
TGACGCGCCCGCTATCAAAATTTTCCCGACACTTTCACGTACATGACGCA
CAGGTCCTTTCCAGTTCCACATTGCTTTTCCTCCCATTGTGTAAAAGGGG
ACTGTCGGGGGGCAAGCACTTCACATCGGAACTCGGAGGCCGACCAGGAA
GTCAGTCCGACCCAGGAAAAAAGGGCGAAGCGTCCATGACTACGCCATTT
ATGAAGGGGTTGGGACAATATGCGGCCCCTATTTTCATGGGGGCCTCGTT
GCTGTACGCGTTGGGGCAAAAGCATCGAGAGGACCTGCGTAAAGCCCGGC
GCGACCGAGCTCATAACCGCATCCTTGTGACCGGGGGCGCGGGGTACATA
GGCAGCCACACGGTGCTCCTCCTGGTCGAGGCTGGCTATGAGGTGGTGGT
GGTGGATAGTCTGGTGAATTCCTGTGAGGAGGCTCTCCGGCGCGTTGGGG
CCTTGACCGGCCACCCGGAGAAGGTTATTTTTTGCAAGGCCGACCTCCTG
GACGAGGAGGCGCTTGAATCCGTTTTCGCCACCCACGGGGGCTTTCGGGC
CTGCGTGCATTTCGCCGGCTTGAAGGCGGTGGGAGAGAGCGTGGCCAAAC
CCCTGCTTTACTACGCGAACAATTTGACAGGGACCCTCCACCTCCTGAAT
GCCATGCACCGGCACGGGTGTAAGATCATGGGTGCGGCAGGGAGGGGGAG
AGGGAGGGAGGGAAGGAGAAGGGAAAGCAGGAAATGCATTCGTTGTCCTC
TGTGCTGACCGCATGAGA
back to top

protein sequence of rna712

>rna712-protein ID=rna712-protein|Name=rna712|organism=Nannochloropsis gaditana|type=polypeptide|length=113bp
MVTAMEKASGRKINYVIGERRPGDLDEVYSDPSKAERELGWKATRGLDDM
TRDLWRWQQQNPQATAEGAFRLNPGALIAMKGRSWSGWKWLEGGMGLELW
YKGMKRYGLLNRV
back to top

mRNA from alignment at CM002456.1:242493..243158+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna712 ID=rna712|Name=rna712|organism=Nannochloropsis gaditana|type=mRNA|length=666bp|location=Sequence derived from alignment at CM002456.1:242493..243158+ (Nannochloropsis gaditana)
ATGGTCACCGCCATGGAGAAAGCTTCGGGCCGAAAGATCAATTACGTGAT
TGGGGAGCGGTGCGTTCTCACTCCCTTTTGTGGCAGTTTTTCTCCAAACC
ACTCGCTCCAGCCATCGTGTCGCTCTTTCACCCCTTCTTGTGGCCCCCgt
actacctcctccttcttccttcctccctcaccgtgTCGTGGCTGGCAATG
AAACCCtgatttcctcccttcccctccactcccctctccctcccttcagg
cGACCGGGGGACCTCGACGAAGTCTACTCTGACCCCAGCAAGGCAGAGCG
AGAATTGGGCTGGAAAGCTACCCGGGGCTTGGACGACATGACCCGGGACT
TATGGcggtggcagcagcagaatCCGCAGGGTTACATatgaggcgaggag
ggaggagattaaagagggaagggggacgtAAAAGGGGATGGTAGAAGAGC
GGAGGGAGCCGAGGGGGTAGGCGGGTAGGTTAGAAACTGTGCGCGGGCGA
GAGGAAATGTCGAGCAACGGCTGAAGGAGCATTTCGATTGAATCCTGGAG
CATTGATCGCGATGAAAGGCAGGTCATGGTCAGGTTGGAAGTGgctggag
ggtgggatggggTTGGAGCTTTGGTATAAAGGGATGAAAAGATATGGCCT
GCTAAATCGAGTATAA
back to top

Coding sequence (CDS) from alignment at CM002456.1:242493..243158+

>rna712 ID=rna712|Name=rna712|organism=Nannochloropsis gaditana|type=CDS|length=1026bp|location=Sequence derived from alignment at CM002456.1:242493..243158+ (Nannochloropsis gaditana)
ATGGTCACCGCCATGGAGAAAGCTTCGGGCCGAAAGATCAATTACGTGAT
TGGGGAGCGgcGACCGGGGGACCTCGACGAAGTCTACTCTGACCCCAGCA
AGGCAGAGCGAGAATTGGGCTGGAAAGCTACCCGGGGCTTGGACGACATG
ACCCGGGACTTATGGcggtggcagcagcagaatCCGCAGGCAACGGCTGA
AGGAGCATTTCGATTGAATCCTGGAGCATTGATCGCGATGAAAGGCAGGT
CATGGTCAGGTTGGAAGTGgctggagggtgggatggggTTGGAGCTTTGG
TATAAAGGGATGAAAAGATATGGCCTGCTAAATCGAGTATAAATGGTCAC
CGCCATGGAGAAAGCTTCGGGCCGAAAGATCAATTACGTGATTGGGGAGC
GgcGACCGGGGGACCTCGACGAAGTCTACTCTGACCCCAGCAAGGCAGAG
CGAGAATTGGGCTGGAAAGCTACCCGGGGCTTGGACGACATGACCCGGGA
CTTATGGcggtggcagcagcagaatCCGCAGGCAACGGCTGAAGGAGCAT
TTCGATTGAATCCTGGAGCATTGATCGCGATGAAAGGCAGGTCATGGTCA
GGTTGGAAGTGgctggagggtgggatggggTTGGAGCTTTGGTATAAAGG
GATGAAAAGATATGGCCTGCTAAATCGAGTATAAATGGTCACCGCCATGG
AGAAAGCTTCGGGCCGAAAGATCAATTACGTGATTGGGGAGCGgcGACCG
GGGGACCTCGACGAAGTCTACTCTGACCCCAGCAAGGCAGAGCGAGAATT
GGGCTGGAAAGCTACCCGGGGCTTGGACGACATGACCCGGGACTTATGGc
ggtggcagcagcagaatCCGCAGGCAACGGCTGAAGGAGCATTTCGATTG
AATCCTGGAGCATTGATCGCGATGAAAGGCAGGTCATGGTCAGGTTGGAA
GTGgctggagggtgggatggggTTGGAGCTTTGGTATAAAGGGATGAAAA
GATATGGCCTGCTAAATCGAGTATAA
back to top
Synonyms
Publications