EWM29959.1, cds712 (CDS) Nannochloropsis gaditana

Overview
NameEWM29959.1
Unique Namecds712
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:242493..242551 +
Alignment locationCM002456.1:242742..242872 +
Alignment locationCM002456.1:243007..243158 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29959.1
Productudp-glucose 4-epimerase
Orig transcript idgnl|cribi|Naga_100567g1.2823.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:242493..242551 +
CM002456.1supercontigCM002456.1:242742..242872 +
CM002456.1supercontigCM002456.1:243007..243158 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003978UDP-glucose 4-epimerase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO:0006012galactose metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR005886GalE
IPR025308Epimerase_C
Homology
BLAST of EWM29959.1 vs. NCBI_GenBank
Match: gi|585112554|gb|EWM29959.1| (udp-glucose 4-epimerase [Nannochloropsis gaditana])

HSP 1 Score: 228.409 bits (581), Expect = 7.347e-76
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
Query:    1 MVTAMEKASGRKINYVIGERRPGDLDEVYSDPSKAERELGWKATRGLDDMTRDLWRWQQQNPQATAEGAFRLNPGALIAMKGRSWSGWKWLEGGMGLELWYKGMKRYGLLNRV 113
            MVTAMEKASGRKINYVIGERRPGDLDEVYSDPSKAERELGWKATRGLDDMTRDLWRWQQQNPQATAEGAFRLNPGALIAMKGRSWSGWKWLEGGMGLELWYKGMKRYGLLNRV
Sbjct:    1 MVTAMEKASGRKINYVIGERRPGDLDEVYSDPSKAERELGWKATRGLDDMTRDLWRWQQQNPQATAEGAFRLNPGALIAMKGRSWSGWKWLEGGMGLELWYKGMKRYGLLNRV 113          
BLAST of EWM29959.1 vs. NCBI_GenBank
Match: gi|1181343166|ref|WP_084644051.1| (UDP-glucose 4-epimerase GalE [Ferrimonas futtsuensis])

HSP 1 Score: 101.293 bits (251), Expect = 2.051e-23
Identity = 43/62 (69.35%), Postives = 49/62 (79.03%), Query Frame = 0
Query:    1 MVTAMEKASGRKINYVIGERRPGDLDEVYSDPSKAERELGWKATRGLDDMTRDLWRWQQQNP 62
            MV A EK SG+ I Y + ERRPGD+   Y+DPSKAERELGWKA RG+D+MTRD WRWQ QNP
Sbjct:  274 MVKAFEKGSGQSIPYQLVERRPGDIASCYADPSKAERELGWKAVRGIDEMTRDSWRWQSQNP 335          
BLAST of EWM29959.1 vs. NCBI_GenBank
Match: gi|1176059732|ref|XP_020618593.1| (UDP-glucose 4-epimerase-like [Orbicella faveolata] >gi|1176059734|ref|XP_020618601.1| UDP-glucose 4-epimerase-like [Orbicella faveolata])

HSP 1 Score: 97.0561 bits (240), Expect = 9.672e-22
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 0
Query:    1 MVTAMEKASGRKINYVIGERRPGDLDEVYSDPSKAERELGWKATRGLDDMTRDLWRWQQQNPQA 64
            MV A+EKASG+ + Y I  RR GD+D VYSD S AE+ELGWKATRGL++M  D WRWQ QNPQ 
Sbjct:  276 MVKAVEKASGKPVPYKIAPRREGDVDAVYSDASFAEKELGWKATRGLEEMCEDAWRWQLQNPQG 339          
BLAST of EWM29959.1 vs. NCBI_GenBank
Match: gi|506359959|ref|WP_015879678.1| (UDP-glucose 4-epimerase [Tolumonas auensis] >gi|237501636|gb|ACQ94229.1| UDP-glucose 4-epimerase [Tolumonas auensis DSM 9187])

HSP 1 Score: 96.6709 bits (239), Expect = 1.122e-21
Identity = 45/67 (67.16%), Postives = 52/67 (77.61%), Query Frame = 0
Query:    1 MVTAMEKASGRKINYVIGERRPGDLDEVYSDPSKAERELGWKATRGLDDMTRDLWRWQQQNPQATAE 67
            MV A  +ASG KINY + ERRPGD+ E ++DP+KA+RELGWKATR LDDMTRD WRWQQ NP    E
Sbjct:  271 MVHAFARASGLKINYKLVERRPGDVAECWADPAKAQRELGWKATRTLDDMTRDSWRWQQANPNGYEE 337          
BLAST of EWM29959.1 vs. NCBI_GenBank
Match: gi|1002592664|ref|XP_015675135.1| (PREDICTED: UDP-glucose 4-epimerase [Protobothrops mucrosquamatus] >gi|1002592666|ref|XP_015675136.1| PREDICTED: UDP-glucose 4-epimerase [Protobothrops mucrosquamatus])

HSP 1 Score: 96.2857 bits (238), Expect = 1.664e-21
Identity = 43/62 (69.35%), Postives = 47/62 (75.81%), Query Frame = 0
Query:    1 MVTAMEKASGRKINYVIGERRPGDLDEVYSDPSKAERELGWKATRGLDDMTRDLWRWQQQNP 62
            MV AMEKASGR+INY I ERR GD+   Y++P  AERELGWKA  GLD M  DLWRWQ QNP
Sbjct:  280 MVKAMEKASGRQINYKIVERREGDVASCYANPGLAERELGWKAIFGLDKMCEDLWRWQSQNP 341          
BLAST of EWM29959.1 vs. NCBI_GenBank
Match: gi|1179975006|ref|WP_083497360.1| (UDP-glucose 4-epimerase GalE [Bacillus humi])

HSP 1 Score: 96.2857 bits (238), Expect = 1.956e-21
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 0
Query:    1 MVTAMEKASGRKINYVIGERRPGDLDEVYSDPSKAERELGWKATRGLDDMTRDLWRWQQQNPQATAEGAFRLN 73
            MV A EKASG +I Y+I +RRPGD+   Y++PSKA   LGWKATRG+D M +D WRWQQ NP    E A + N
Sbjct:  271 MVEAFEKASGERIPYIIKDRRPGDVAICYANPSKARNHLGWKATRGIDQMCQDSWRWQQNNPNGYNEQAEKQN 343          
BLAST of EWM29959.1 vs. NCBI_GenBank
Match: gi|927114008|ref|XP_013915679.1| (PREDICTED: UDP-glucose 4-epimerase [Thamnophis sirtalis])

HSP 1 Score: 96.2857 bits (238), Expect = 1.985e-21
Identity = 43/62 (69.35%), Postives = 47/62 (75.81%), Query Frame = 0
Query:    1 MVTAMEKASGRKINYVIGERRPGDLDEVYSDPSKAERELGWKATRGLDDMTRDLWRWQQQNP 62
            MV AMEKASGR+INY I ERR GD+   Y++P  AERELGWKA  GLD M  DLWRWQ QNP
Sbjct:  280 MVKAMEKASGRQINYKIVERREGDVASCYANPGLAERELGWKAIFGLDKMCEDLWRWQAQNP 341          
BLAST of EWM29959.1 vs. NCBI_GenBank
Match: gi|602648309|ref|XP_007430572.1| (PREDICTED: UDP-glucose 4-epimerase [Python bivittatus])

HSP 1 Score: 95.9005 bits (237), Expect = 2.392e-21
Identity = 43/62 (69.35%), Postives = 47/62 (75.81%), Query Frame = 0
Query:    1 MVTAMEKASGRKINYVIGERRPGDLDEVYSDPSKAERELGWKATRGLDDMTRDLWRWQQQNP 62
            MV AMEKASGR+INY I ERR GD+   Y++P  AERELGWKA  GLD M  DLWRWQ QNP
Sbjct:  280 MVKAMEKASGRQINYKIVERREGDVASCYANPGLAERELGWKAIFGLDKMCEDLWRWQSQNP 341          
BLAST of EWM29959.1 vs. NCBI_GenBank
Match: gi|1083305999|ref|XP_018602448.1| (PREDICTED: UDP-glucose 4-epimerase [Scleropages formosus] >gi|1083306001|ref|XP_018602449.1| PREDICTED: UDP-glucose 4-epimerase [Scleropages formosus])

HSP 1 Score: 95.5153 bits (236), Expect = 3.450e-21
Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 0
Query:    1 MVTAMEKASGRKINYVIGERRPGDLDEVYSDPSKAERELGWKATRGLDDMTRDLWRWQQQNP 62
            MV AMEKASGRK+ Y IG+RR GD+   Y+DP  AERELGWKA  GLD M  DLWRWQ +NP
Sbjct:  280 MVAAMEKASGRKVPYRIGQRRSGDIASCYADPRLAERELGWKAVFGLDKMCEDLWRWQTKNP 341          
BLAST of EWM29959.1 vs. NCBI_GenBank
Match: gi|972974628|ref|XP_015204248.1| (PREDICTED: UDP-glucose 4-epimerase isoform X2 [Lepisosteus oculatus])

HSP 1 Score: 95.5153 bits (236), Expect = 3.518e-21
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0
Query:    1 MVTAMEKASGRKINYVIGERRPGDLDEVYSDPSKAERELGWKATRGLDDMTRDLWRWQQQNPQATAEGA 69
            MV AMEKASGR+I Y I  RR GD+   Y+DP  AE+ELGWKA+ GL+ M  DLWRWQ QNP   ++GA
Sbjct:  279 MVKAMEKASGREIQYKIAPRRNGDIASCYADPQLAEKELGWKASFGLEKMCEDLWRWQSQNPTGFSQGA 347          
The following BLAST results are available for this feature:
BLAST of EWM29959.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112554|gb|EWM29959.1|7.347e-76100.00udp-glucose 4-epimerase [Nannochloropsis gaditana][more]
gi|1181343166|ref|WP_084644051.1|2.051e-2369.35UDP-glucose 4-epimerase GalE [Ferrimonas futtsuens... [more]
gi|1176059732|ref|XP_020618593.1|9.672e-2265.63UDP-glucose 4-epimerase-like [Orbicella faveolata]... [more]
gi|506359959|ref|WP_015879678.1|1.122e-2167.16UDP-glucose 4-epimerase [Tolumonas auensis] >gi|23... [more]
gi|1002592664|ref|XP_015675135.1|1.664e-2169.35PREDICTED: UDP-glucose 4-epimerase [Protobothrops ... [more]
gi|1179975006|ref|WP_083497360.1|1.956e-2157.53UDP-glucose 4-epimerase GalE [Bacillus humi][more]
gi|927114008|ref|XP_013915679.1|1.985e-2169.35PREDICTED: UDP-glucose 4-epimerase [Thamnophis sir... [more]
gi|602648309|ref|XP_007430572.1|2.392e-2169.35PREDICTED: UDP-glucose 4-epimerase [Python bivitta... [more]
gi|1083305999|ref|XP_018602448.1|3.450e-2167.74PREDICTED: UDP-glucose 4-epimerase [Scleropages fo... [more]
gi|972974628|ref|XP_015204248.1|3.518e-2160.87PREDICTED: UDP-glucose 4-epimerase isoform X2 [Lep... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna712rna712Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications