rna686, rna686 (mRNA) Nannochloropsis gaditana

Overview
Namerna686
Unique Namerna686
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2105
Alignment locationCM002456.1:164468..164920 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100276g4.9390.mrna
Orig protein idgnl|cribi|Naga_100276g4.9390
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:164468..164920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100276g4gene659Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna686rna686-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29989.1cds686Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna686 ID=rna686|Name=rna686|organism=Nannochloropsis gaditana|type=mRNA|length=2105bp
CCTCGTCCTCATACCCATGGCCCAACTACTTGACGGAAATCATTCGCAAT
ACTGCCGTGTGTTGTATCATGATAACTGAATGCATTTTTTTAAACCTGTG
TAGCTTCTCGGTTGGAAAGTCGGATACGTCCGACGTCCTCCAGGTCAACC
CCTCTGCATTAGCGTCTCCAAGCAGGTCTAGCCCTTTAACAAAGTCATTC
ATGGATGATAAGAGGTCTCATAATTTTTTTAGAAGGCATCCTTATTACAT
GTCAGCGTATGTGGTTTGCTTTTCTCTTTCTGGATGGAGAGCGGGATCTG
CTCGATGTACGCACACATGTAGCACAGGCGTGGTCCCAGCACGATGCATG
TTTCTATAGCTAGAAGGGGAAAGAAAATCATAGGGATTACCTGGACTGGA
GTTCTGATAAAGTCTCATACAGATCTCTTTCACTTTACTTTTTGCAAATT
ATGCTGCAGAAAATATCAAGGGGTGGCCGGCAGTGTCAGGATACTTTTGT
TAAGGCCTTATTCGCCCTCATCGGGAAGAGCTAATCGCGTTTGATAGCAC
GAAAGGGGCAAGCTTTTTCAGCTTTATCTCTTCCATACGTCAAGATAGCC
GCACCTGTTGACAAAATGGATGAGGCACCTTTGCCTACAAGGACACCAGC
CACCTCAACATCACAGCCGACGTCCGGGGAACTCGTCCCTAGCTCTTCTT
CGGGCCCCGCCCCCCGACGACCTTTGAAGCGCTTTGTCAGCAAGGTCAAA
CGCATTCCTGACGATATCCTTGAAGACCCCGCCTTGGCTCAAGCCATCGC
ACAGCTGCCGTCCAACTACAATTTTGAGGTGCACAAGACGATATGGCGGC
TCCGAGAAGCGGGAGCCACATGCGTGGCGCTCCAGTTTCCCGAGGGACTC
TTGATGTACGCCTGCACGCTGGCCGACATCATGGAGCGCTACGTCCCTTC
GGTGGAGGAGGTGGTGGTGATGGGTGACGTCACCTACGGCGCGTGCTGTA
TCGATGACCTGGGGGCGAAGGCGGCAGGAGCGGATTTCTTGGTTCACTAC
GGACACAGCTGTCTGGTGCCGGTCACCTGCACCGCGCTCAAGGCGCTCTA
TGTCTTCGTCGAGATCAGCGTCGACGCCGCCCATTTGATCGACAGCCTCC
GTCGGAACCTGGAAGCGCCTCGGAGGGTCTGTCTGATGGGAACGATTCAA
TTCATCTCCGCTGTGCACGAGTCGGCCAAAGCGCTGTCAGATCACTTTGC
CTCCGTCTCCGTCCCTCAGGCGCGGCCTCTCTCAGCGGGAGAGGTACTGG
GATGCACATCCCCTACGCTGGACGCCGCAAAGTTCGATACATTGATCTTT
GTTGCCGACGGGCGCTTCCACTTGGAAGCAGCGATGATTGCGAACCCATC
CTTAGAAGCCTACCGATATGACCCCTACGATAAAACTTTGACCCGAGAAA
TCTACGACACCCCGAAAATGCTTCGCCTTCGCAAACAAGCCGTGGCCGCT
GGGAAGGTGGCCAAACGCTGGGGTGTCATCTTGGGTACATTAGGAAGGCA
GGGAAATCCTGCATTGGTAAAACATGCGATGGACCTACTGGAAAGGTCAG
GGAGAGAGGCATTTATCTTGCTTTTATCGGAAATTACGCCTCAGAAGTTG
GAGCTTTTACATGAAGAGGTAGACGCCTGGGTGCAGGTGGCTTGTCCCCG
GCTGTCGATTGATTGGGGGCATTTCTTTCCGAATCCTGTACTGACAGCCT
ACGAGCTTGAAGTCGCTTTGGGAGGGCAGGCCTGGTCCGAGGCGAGCTAC
CCGATGGACTATTATGCTAAAGACGGTGGAGCGTGGGGCAATTTTAACCC
AGCTAATGCGAAACGGCAAATGTTGTAAAATCATATATTGACATCGCTTT
TGGAATACTTGGATGTACCTTTATCTGTCGGACTTTCTTCCATGGAACCA
TTTCTTTGTCGGGGTTTGGGCCTTTGCTTGGATAGATGACCGAACACCAG
GAAGCGGAGTAAAGTAGTCGCATAAATATGGGCACCACTGGAAAATCTAA
AATGAATTATACATTACAATGCAAAAGGGAAAAGAGACGCTGTATGTCCC
CCAAA
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protein sequence of rna686

>rna686-protein ID=rna686-protein|Name=rna686|organism=Nannochloropsis gaditana|type=polypeptide|length=73bp
MADNSLWSLLVLILLIIADIIAVSKVCRSGRSTLVIVLWTLLIFFFPVGG
LLIWFLLGPREYSANAPVQNAVS
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mRNA from alignment at CM002456.1:164468..164920+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna686 ID=rna686|Name=rna686|organism=Nannochloropsis gaditana|type=mRNA|length=453bp|location=Sequence derived from alignment at CM002456.1:164468..164920+ (Nannochloropsis gaditana)
GAGAATCGTTCCTTATTTTTCTGCAAACATTTGCTTGTAATTTTAACTTC
GACAGCTTATCCTACCGACAGGCATCACATAGTACGAGGAGGTTACGCGT
TCTACGAAAGCAAATAAAATGGCTGACAATTCTCTCTGGTCACTGCTTGT
CCTTATTCTCCTCATTATTGCCGATATCATTGCTGTCTCTAAAGTTTGTC
GGAGCGGGCGCTCCACCTTAGTGATTGTACTTTGGACTCTCCTCATATTC
TTCTTTCCTGTGGGTGGCCTCCTCATTTGGTTCTTGCTCGGCCCACGAGA
ATACAGCGCAAATGCGCCAGTGCAGAATGCAGTGAGCTGAGAATTGAATG
GACGACATGTGGTCCAAGAGAATGACGGGATGAAGTGGGCGAAATGAGGG
ACAAATCGTGAGGGTTAGCGGCATCTATTAAAATCAACAAGGACCACAAA
ATG
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Coding sequence (CDS) from alignment at CM002456.1:164468..164920+

>rna686 ID=rna686|Name=rna686|organism=Nannochloropsis gaditana|type=CDS|length=222bp|location=Sequence derived from alignment at CM002456.1:164468..164920+ (Nannochloropsis gaditana)
ATGGCTGACAATTCTCTCTGGTCACTGCTTGTCCTTATTCTCCTCATTAT
TGCCGATATCATTGCTGTCTCTAAAGTTTGTCGGAGCGGGCGCTCCACCT
TAGTGATTGTACTTTGGACTCTCCTCATATTCTTCTTTCCTGTGGGTGGC
CTCCTCATTTGGTTCTTGCTCGGCCCACGAGAATACAGCGCAAATGCGCC
AGTGCAGAATGCAGTGAGCTGA
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Synonyms
Publications