EWM29989.1, cds686 (CDS) Nannochloropsis gaditana

Overview
NameEWM29989.1
Unique Namecds686
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:164586..164807 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29989.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100276g4.9390.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:164586..164807 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR027379CLS_N
Homology
BLAST of EWM29989.1 vs. NCBI_GenBank
Match: gi|585112597|gb|EWM29989.1| (hypothetical protein Naga_100276g4 [Nannochloropsis gaditana])

HSP 1 Score: 142.124 bits (357), Expect = 6.792e-43
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0
Query:    1 MADNSLWSLLVLILLIIADIIAVSKVCRSGRSTLVIVLWTLLIFFFPVGGLLIWFLLGPREYSANAPVQNAVS 73
            MADNSLWSLLVLILLIIADIIAVSKVCRSGRSTLVIVLWTLLIFFFPVGGLLIWFLLGPREYSANAPVQNAVS
Sbjct:    1 MADNSLWSLLVLILLIIADIIAVSKVCRSGRSTLVIVLWTLLIFFFPVGGLLIWFLLGPREYSANAPVQNAVS 73          
BLAST of EWM29989.1 vs. NCBI_GenBank
Match: gi|503417146|ref|WP_013651807.1| (hypothetical protein [Polymorphum gilvum] >gi|326412427|gb|ADZ69490.1| hypothetical protein SL003B_1061 [Polymorphum gilvum SL003B-26A1])

HSP 1 Score: 52.7582 bits (125), Expect = 1.363e-7
Identity = 25/51 (49.02%), Postives = 37/51 (72.55%), Query Frame = 0
Query:   10 LVLILLIIADIIAVSKVCRSGRSTLVIVLWTLLIFFFPVGGLLIWFLLGPR 60
            L+ +L++IAD+ A+++   SG ST   +LWTL I  FPV G+++WFL GPR
Sbjct:    5 LIGLLVLIADVYAIARTLSSGASTGAKILWTLGILIFPVVGVIVWFLAGPR 55          
BLAST of EWM29989.1 vs. NCBI_GenBank
Match: gi|1154111923|ref|WP_078487655.1| (hypothetical protein [Solemya elarraichensis gill symbiont] >gi|1152918087|gb|OOZ36088.1| hypothetical protein BOW51_08825 [Solemya elarraichensis gill symbiont])

HSP 1 Score: 51.6026 bits (122), Expect = 3.842e-7
Identity = 24/51 (47.06%), Postives = 38/51 (74.51%), Query Frame = 0
Query:   10 LVLILLIIADIIAVSKVCRSGRSTLVIVLWTLLIFFFPVGGLLIWFLLGPR 60
            L+ +L++IADI A+ K+ +S  STL   +W +++ FFPV GL+ WFL+GP+
Sbjct:    8 LIGLLILIADIYAIIKIVQSASSTLSKAIWIVIVLFFPVIGLVAWFLIGPK 58          
BLAST of EWM29989.1 vs. NCBI_GenBank
Match: gi|1016251923|ref|WP_062953875.1| (hypothetical protein [Thalassospira sp. MCCC 1A01148] >gi|1016024659|gb|KZB73435.1| hypothetical protein AUQ43_17670 [Thalassospira sp. MCCC 1A01148])

HSP 1 Score: 51.2174 bits (121), Expect = 5.067e-7
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 0
Query:   13 ILLIIADIIAVSKVCRSGRSTLVIVLWTLLIFFFPVGGLLIWFLLGPREYSANA 66
            +L++IADI A+  +  SG ST   VLWT+L+   PV GL+IWFL GPR   A A
Sbjct:   10 LLVLIADIWAIVNIMGSGASTGSKVLWTVLVVILPVLGLIIWFLAGPRSGRATA 63          
BLAST of EWM29989.1 vs. NCBI_GenBank
Match: gi|749662383|ref|WP_040261556.1| (hypothetical protein [Pseudomonas massiliensis])

HSP 1 Score: 50.8322 bits (120), Expect = 9.249e-7
Identity = 28/69 (40.58%), Postives = 46/69 (66.67%), Query Frame = 0
Query:    4 NSLWSLLVLILLIIADIIAVSKVCRSGRSTLVIVLWTLLIFFFPVGGLLIWFLLGPR--EYSANAPVQN 70
            +SL S L+ I++++ADI A+  V RS +S+   + WT+LIF  PV GL+IW ++GPR    + ++P  +
Sbjct:    2 DSLLSGLIGIVVLLADIWAIVSVWRSDKSSGTKIGWTVLIFILPVVGLVIWGIMGPRGMHPAPSSPTHS 70          
BLAST of EWM29989.1 vs. NCBI_GenBank
Match: gi|760090268|ref|WP_043772724.1| (hypothetical protein [Roseivivax isoporae] >gi|575505636|gb|ETX28077.1| hypothetical protein RISW2_09900 [Roseivivax isoporae LMG 25204])

HSP 1 Score: 50.447 bits (119), Expect = 9.845e-7
Identity = 29/64 (45.31%), Postives = 38/64 (59.38%), Query Frame = 0
Query:    3 DNSLWSLLVLILLIIADIIAVSKVCRSGRSTLVIVLWTLLIFFFPVGGLLIWFLLGPREYSANA 66
            +  L+ L+VLIL    DI A+ ++  SG STL  VLWTL I   P+ G ++W L GPR  S  A
Sbjct:    2 EYGLFGLIVLIL----DIYAIYQILTSGASTLAKVLWTLAILILPILGFIVWLLAGPRGRSVRA 61          
The following BLAST results are available for this feature:
BLAST of EWM29989.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585112597|gb|EWM29989.1|6.792e-43100.00hypothetical protein Naga_100276g4 [Nannochloropsi... [more]
gi|503417146|ref|WP_013651807.1|1.363e-749.02hypothetical protein [Polymorphum gilvum] >gi|3264... [more]
gi|1154111923|ref|WP_078487655.1|3.842e-747.06hypothetical protein [Solemya elarraichensis gill ... [more]
gi|1016251923|ref|WP_062953875.1|5.067e-751.85hypothetical protein [Thalassospira sp. MCCC 1A011... [more]
gi|749662383|ref|WP_040261556.1|9.249e-740.58hypothetical protein [Pseudomonas massiliensis][more]
gi|760090268|ref|WP_043772724.1|9.845e-745.31hypothetical protein [Roseivivax isoporae] >gi|575... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna686rna686Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications