EWM29989.1, cds686 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29989.1 vs. NCBI_GenBank
Match: gi|585112597|gb|EWM29989.1| (hypothetical protein Naga_100276g4 [Nannochloropsis gaditana]) HSP 1 Score: 142.124 bits (357), Expect = 6.792e-43 Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 Query: 1 MADNSLWSLLVLILLIIADIIAVSKVCRSGRSTLVIVLWTLLIFFFPVGGLLIWFLLGPREYSANAPVQNAVS 73 MADNSLWSLLVLILLIIADIIAVSKVCRSGRSTLVIVLWTLLIFFFPVGGLLIWFLLGPREYSANAPVQNAVS Sbjct: 1 MADNSLWSLLVLILLIIADIIAVSKVCRSGRSTLVIVLWTLLIFFFPVGGLLIWFLLGPREYSANAPVQNAVS 73
BLAST of EWM29989.1 vs. NCBI_GenBank
Match: gi|503417146|ref|WP_013651807.1| (hypothetical protein [Polymorphum gilvum] >gi|326412427|gb|ADZ69490.1| hypothetical protein SL003B_1061 [Polymorphum gilvum SL003B-26A1]) HSP 1 Score: 52.7582 bits (125), Expect = 1.363e-7 Identity = 25/51 (49.02%), Postives = 37/51 (72.55%), Query Frame = 0 Query: 10 LVLILLIIADIIAVSKVCRSGRSTLVIVLWTLLIFFFPVGGLLIWFLLGPR 60 L+ +L++IAD+ A+++ SG ST +LWTL I FPV G+++WFL GPR Sbjct: 5 LIGLLVLIADVYAIARTLSSGASTGAKILWTLGILIFPVVGVIVWFLAGPR 55
BLAST of EWM29989.1 vs. NCBI_GenBank
Match: gi|1154111923|ref|WP_078487655.1| (hypothetical protein [Solemya elarraichensis gill symbiont] >gi|1152918087|gb|OOZ36088.1| hypothetical protein BOW51_08825 [Solemya elarraichensis gill symbiont]) HSP 1 Score: 51.6026 bits (122), Expect = 3.842e-7 Identity = 24/51 (47.06%), Postives = 38/51 (74.51%), Query Frame = 0 Query: 10 LVLILLIIADIIAVSKVCRSGRSTLVIVLWTLLIFFFPVGGLLIWFLLGPR 60 L+ +L++IADI A+ K+ +S STL +W +++ FFPV GL+ WFL+GP+ Sbjct: 8 LIGLLILIADIYAIIKIVQSASSTLSKAIWIVIVLFFPVIGLVAWFLIGPK 58
BLAST of EWM29989.1 vs. NCBI_GenBank
Match: gi|1016251923|ref|WP_062953875.1| (hypothetical protein [Thalassospira sp. MCCC 1A01148] >gi|1016024659|gb|KZB73435.1| hypothetical protein AUQ43_17670 [Thalassospira sp. MCCC 1A01148]) HSP 1 Score: 51.2174 bits (121), Expect = 5.067e-7 Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 0 Query: 13 ILLIIADIIAVSKVCRSGRSTLVIVLWTLLIFFFPVGGLLIWFLLGPREYSANA 66 +L++IADI A+ + SG ST VLWT+L+ PV GL+IWFL GPR A A Sbjct: 10 LLVLIADIWAIVNIMGSGASTGSKVLWTVLVVILPVLGLIIWFLAGPRSGRATA 63
BLAST of EWM29989.1 vs. NCBI_GenBank
Match: gi|749662383|ref|WP_040261556.1| (hypothetical protein [Pseudomonas massiliensis]) HSP 1 Score: 50.8322 bits (120), Expect = 9.249e-7 Identity = 28/69 (40.58%), Postives = 46/69 (66.67%), Query Frame = 0 Query: 4 NSLWSLLVLILLIIADIIAVSKVCRSGRSTLVIVLWTLLIFFFPVGGLLIWFLLGPR--EYSANAPVQN 70 +SL S L+ I++++ADI A+ V RS +S+ + WT+LIF PV GL+IW ++GPR + ++P + Sbjct: 2 DSLLSGLIGIVVLLADIWAIVSVWRSDKSSGTKIGWTVLIFILPVVGLVIWGIMGPRGMHPAPSSPTHS 70
BLAST of EWM29989.1 vs. NCBI_GenBank
Match: gi|760090268|ref|WP_043772724.1| (hypothetical protein [Roseivivax isoporae] >gi|575505636|gb|ETX28077.1| hypothetical protein RISW2_09900 [Roseivivax isoporae LMG 25204]) HSP 1 Score: 50.447 bits (119), Expect = 9.845e-7 Identity = 29/64 (45.31%), Postives = 38/64 (59.38%), Query Frame = 0 Query: 3 DNSLWSLLVLILLIIADIIAVSKVCRSGRSTLVIVLWTLLIFFFPVGGLLIWFLLGPREYSANA 66 + L+ L+VLIL DI A+ ++ SG STL VLWTL I P+ G ++W L GPR S A Sbjct: 2 EYGLFGLIVLIL----DIYAIYQILTSGASTLAKVLWTLAILILPILGFIVWLLAGPRGRSVRA 61 The following BLAST results are available for this feature:
BLAST of EWM29989.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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