rna679, rna679 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna679
Unique Name	rna679
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1299
Alignment location	CM002456.1:149797..151776 -

Link to JBrowse

Properties


Property Name	Value
Product	exportin 4
Orig transcript id	gnl\|cribi\|Naga_101604g1.8320.mrna
Orig protein id	gnl\|cribi\|Naga_101604g1.8320
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:149797..151776 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101604g1	gene652	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29994.1	cds679	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna679	rna679-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:149797..151776-
coding sequence from alignment at CM002456.1:149797..151776-

mRNA sequence

>rna679 ID=rna679|Name=rna679|organism=Nannochloropsis gaditana|type=mRNA|length=1299bp
CAGGCATTGAGCTCCCCCGCGAGCGCATTTATGGCCTAGGCTCTGGCCCC
AAGACGGATATATTGGCGCGCATGGCGCGTTTGAACAGAGAGAGGGCGGC
GCAGGACCCAAGCATGGACAGGGAGCCGACGTTGCACTTCGTGGAAGATC
GGGTCGAGACATTGGAAAAGGTGTGCGGAGATCCCCGCTTGCAGAACGTC
CAACTCTACCTGGCAGACTGGGGCTACACCACAGACGCGGCGCGGGAAAG
GGCGATGCTGAACCCTCGCATTCGGATCCTGCAGCTCGCCGACTTTGCCT
GCATGTGCCAGGCTCTGGGCGCGAGGGAGGGAGAGGCCGGGGAGGAGGGC
AGGTGAGGGAGGGAGGGAGGGAGGGAGGGGGCAAGGAAGCTCGAAAGAGG
ATATGAGGCGTGGACTTCAAAGCCATGAGGGATAGCGTGAAGGGCGGCAA
TCATTTGTTTCCTGTCCTGCGAAGGGGCGAGAGCCTTTCGTCTTGTATTA
CTGCGACAGAACCTTGATGCCCGCCTTACGCCAAAGTCGTAACATCGCTG
CCCCTCCCTCCCTCCGTCCCTCCCTCCCTCCCTTCCCCCATCCCTCCTCC
CTCCCTCAGCTCCTGCTCCTTCGCCTGTCTCCACGCTGCCTGCACCCCGT
CGTGTGGAGGCAGTGAAAACAATCTAGCGGTAGAAAAGATCGTTTTTCAG
CCCGAACCCCCTCCTTCCCCTGTCTACACGGTGGCGAACGCCGGGGAGGG
AGGGCGCGAGGGAGGTGGGGAAGGAGAGAGGGCACAGGCAGTCGTGTGGA
AAGGAAGCGGGTCGAGTTGGTCGGAGCGAGAGTGGGAGAGGAAGGACTTG
GAGAGCGTGATGGCGAGTATTGTACAGGAAAGGGAGGAGGAGGAGGCGGG
AGGGCGTTCGGAATGGGAGGTGTAAGCGAAGGGGAAGGGAGGGAGGGAAG
GAAGGAGGGAGGGAGGGACTGTTTGTTGTGTAGGTAGCTTCAGTAGAAAG
GAGGGAAAATCGGACCTGCTGCGACAGGAGTCCTGTACAAGCATTCTATG
CTTAGTCATGCCACGCAGTTGAATTTAGTATCAGCCAGTGATTAGACCAG
AGCCAGATCAAGGCGTGACTGCGAAGTTGGTATCAAGGGGGAGAGGCGAG
GGGGAGACGAGTTAAGGCACCTTTCCCTTTAAATCCTGCTTCAAAGGGAC
CACCTGCAACCGGCGCCGGAGACCCGCGTAGTTATGCGTCGAAATTTCGT
GAGAACGGTTCCCCCAAAAATGAACGAAATGATGTCTTTGGGAGTTCCT

protein sequence of rna679

>rna679-protein ID=rna679-protein|Name=rna679|organism=Nannochloropsis gaditana|type=polypeptide|length=626bp
PPSLLPATSLPPSTAAALLVDACTHLQHLAGFLLQRAVEVPDDPFLSPYL
TETILSFVARFARTYLLPDPSLYRNGILAPTLVQAFGGEAGEGQVEQSLR
IAWGFLTRWPSQREVAKAAIAVVRAVVLTGGEPLGRAAVRSEAWKMMLRD
MEAEKHFLRQHGEQLVGNGQEGHGHAPSPSPQIPPELGYLRLASDLRGEL
LEVVVGGILARENDAEASQGIAQVAGPVETRLHFLYMGLKGSNGKSGVGR
SGLVREVGVVAGLYAGMARAVDNTGQAYLPRLITHALEPLLDVATLCSAY
PDALHAVLLFLRDYAEVQISSLGAPATMSLLTATGQALKAYASHNVGRTR
KDANSKEEAVGDILCVLELLSHVASKDFVDFSAEQEGKLAADTVADVVFF
GLERLIPLMSEELLEYPPLGKQYFTLVNSMVSTYTERVAFLPHPLFMQLL
QSVMFGVQRPDSEIARDSLRALAGLASFHAQTVGSRVRSAGHANGGGRGL
EAHVTAHPALFSECTRKLLHLVVYEGSVWDRLDAASNALLALILCDREAF
LCLLAGILEEQPPSVKERLGQEFQKLMSAIPPRMEGGDGREGGRRRGPAW
DRQTKLAFRHHLRAFATQVRPFMQMR

mRNA from alignment at CM002456.1:149797..151776-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna679 ID=rna679|Name=rna679|organism=Nannochloropsis gaditana|type=mRNA|length=1980bp|location=Sequence derived from alignment at CM002456.1:149797..151776- (Nannochloropsis gaditana)
CCTCCCTCCCTCCTTCCCGCCACCTCCCTGCCTCCCTCCACAGCGGCCGC
CCTGCTTGTGGACGCGTGCACCCATCTCCAGCACCTGGCAGGCTTCCTTC
TCCAACGTGCGGTAGAGGTGCCCGATGACCCCTTCCTCTCCCCCTACTTG
ACAGAAACCATCCTCAGCTTTGTGGCCAGATTTGCCCGGACCTACCTCCT
GCCCGACCCCTCTCTCTACCGCAACGGCATCCTCGCTCCCACCTTAGTCC
AGGCTTTTGGGGGGGAGGCAGGGGAAGGCCAAGTGGAGCAAAGTCTCAGG
ATAGCCTGGGGGTTCCTGACGCGCTGGCCGTCGCAAAGGGAGGTGGCCAA
GGCTGCCATCGCCGTGGTGCGGGCGGTGGTGCTCACGGGGGGGGAACCGT
TGGGGCGCGCCGCCGTCCGCTCTGAGGCCTGGAAGATGATGTTACGGGAC
ATGGAGGCGGAGAAACACTTTTTGAGGCAGCACGGGGAGCAATTGGTGGG
CAATGGACAGGAGGGTCATGGCCATGCCCCCTCGCCATCGCCGCAAATTC
CGCCGGAACTTGGCTATCTCCGGCTGGCTTCGGATTTACGGGGCGAGCTC
TTGGAAGTCGTGGTGGGAGGAATTTTGGCGCGGGAAAACGACGCGGAGGC
CAGCCAGGGCATCGCACAGGTGGCAGGACCTGTGGAGACGCGGTTGCACT
TCCTTTACATGGGGTTGAAAGGCTCGAACGGGAAGAGTGGGGTAGGCCGG
AGCGGACTGGTGCGAGAGGTGGGGGTCGTGGCAGGATTGTACGCGGGCAT
GGCGCGCGCCGTGGACAACACAGGGCAAGCCTATTTGCCGCGTTTGATCA
CTCACGCCCTGGAGCCATTGCTGGATGTGGCCACGCTTTGCAGTGCGTAC
CCGGATGCCTTGCACGCCGTGCTGTTATTTTTGCGGGACTACGCCGAAGT
GCAGATTTCCAGCCTGGGGGCTCCGGCCACCATGAGCTTGTTGACGGCGA
CGGGACAGGCGTTGAAAGCGTATGCCAGCCACAACGTGGGCCGGACTCGG
AAAGACGCCAACTCGAAGGAAGAAGCGGTGGGTGACATCTTGTGCGTGCT
GGAACTGCTCTCCCATGTGGCAAGCAAAGATTTTGTGGATTTCTCGGCCG
AACAGGAAGGAAAATTGGCTGCAGACACGGTCGCGGACGTGGTCTTCTTT
GGGTTGGAACGCCTGATCCCTTTGATGTCCGAAGAGCTCTTGGAGTATCC
CCCCCTGGGAAAGCAGTATTTCACGCTGGTCAACTCCATGGTATCCACCT
ACACGGAGCGCGTGGCCTTCTTGCCCCATCCCCTCTTCATGCAGCTCCTG
CAAAGCGTCATGTTTGGGGTGCAGCGCCCCGACAGTGAGATTGCCCGCGA
TTCCCTCCGGGCCTTGGCAGGTCTGGCTTCCTTCCACGCCCAGACTGTGG
GCTCTCGCGTCAGGTCGGCCGGCCATGCGAACGGCGGAGGGAGGGGTCTC
GAGGCGCACGTGACGGCCCATCCTGCCCTTTTTTCGGAGTGCACCCGCAA
GCTCTTGCACCTGGTCGTGTACGAAGGGAGCGTGTGGGACCGTCTTGACG
CCGCTTCCAACGCCCTTTTGGCCTTGATTTTGTGCGATCGGGAGGCTTTC
CTCTGTCTGCTCGCCGGAATTTTGGAGGAGCAGCCTCCCAGTGTGAAGGA
GCGGCTGGGTCAAGAATTTCAAAAACTGATGTCGGCCATCCCGCCCCGCA
TGGAGGGAGGGGACGGAAGGGAGGGAGGGAGAAGACGGGGCCCGGCCTGG
GACCGGCAGACTAAGCTGGCATTCCGCCACCATCTGAGAGCGTTCGCCAC
CCAAGTCCGACCATTCATGCAAATGCGGTGAACAAAAAGGCGTCCCAGCC
GGAACGCGGCAGCAAAACTCCAACAGGGCGTGCAACAAGCCCTACGTTGA
AAAGTACCAAAACCCGGATGAACAACACAA

Coding sequence (CDS) from alignment at CM002456.1:149797..151776-

>rna679 ID=rna679|Name=rna679|organism=Nannochloropsis gaditana|type=CDS|length=1881bp|location=Sequence derived from alignment at CM002456.1:149797..151776- (Nannochloropsis gaditana)
CCTCCCTCCCTCCTTCCCGCCACCTCCCTGCCTCCCTCCACAGCGGCCGC
CCTGCTTGTGGACGCGTGCACCCATCTCCAGCACCTGGCAGGCTTCCTTC
TCCAACGTGCGGTAGAGGTGCCCGATGACCCCTTCCTCTCCCCCTACTTG
ACAGAAACCATCCTCAGCTTTGTGGCCAGATTTGCCCGGACCTACCTCCT
GCCCGACCCCTCTCTCTACCGCAACGGCATCCTCGCTCCCACCTTAGTCC
AGGCTTTTGGGGGGGAGGCAGGGGAAGGCCAAGTGGAGCAAAGTCTCAGG
ATAGCCTGGGGGTTCCTGACGCGCTGGCCGTCGCAAAGGGAGGTGGCCAA
GGCTGCCATCGCCGTGGTGCGGGCGGTGGTGCTCACGGGGGGGGAACCGT
TGGGGCGCGCCGCCGTCCGCTCTGAGGCCTGGAAGATGATGTTACGGGAC
ATGGAGGCGGAGAAACACTTTTTGAGGCAGCACGGGGAGCAATTGGTGGG
CAATGGACAGGAGGGTCATGGCCATGCCCCCTCGCCATCGCCGCAAATTC
CGCCGGAACTTGGCTATCTCCGGCTGGCTTCGGATTTACGGGGCGAGCTC
TTGGAAGTCGTGGTGGGAGGAATTTTGGCGCGGGAAAACGACGCGGAGGC
CAGCCAGGGCATCGCACAGGTGGCAGGACCTGTGGAGACGCGGTTGCACT
TCCTTTACATGGGGTTGAAAGGCTCGAACGGGAAGAGTGGGGTAGGCCGG
AGCGGACTGGTGCGAGAGGTGGGGGTCGTGGCAGGATTGTACGCGGGCAT
GGCGCGCGCCGTGGACAACACAGGGCAAGCCTATTTGCCGCGTTTGATCA
CTCACGCCCTGGAGCCATTGCTGGATGTGGCCACGCTTTGCAGTGCGTAC
CCGGATGCCTTGCACGCCGTGCTGTTATTTTTGCGGGACTACGCCGAAGT
GCAGATTTCCAGCCTGGGGGCTCCGGCCACCATGAGCTTGTTGACGGCGA
CGGGACAGGCGTTGAAAGCGTATGCCAGCCACAACGTGGGCCGGACTCGG
AAAGACGCCAACTCGAAGGAAGAAGCGGTGGGTGACATCTTGTGCGTGCT
GGAACTGCTCTCCCATGTGGCAAGCAAAGATTTTGTGGATTTCTCGGCCG
AACAGGAAGGAAAATTGGCTGCAGACACGGTCGCGGACGTGGTCTTCTTT
GGGTTGGAACGCCTGATCCCTTTGATGTCCGAAGAGCTCTTGGAGTATCC
CCCCCTGGGAAAGCAGTATTTCACGCTGGTCAACTCCATGGTATCCACCT
ACACGGAGCGCGTGGCCTTCTTGCCCCATCCCCTCTTCATGCAGCTCCTG
CAAAGCGTCATGTTTGGGGTGCAGCGCCCCGACAGTGAGATTGCCCGCGA
TTCCCTCCGGGCCTTGGCAGGTCTGGCTTCCTTCCACGCCCAGACTGTGG
GCTCTCGCGTCAGGTCGGCCGGCCATGCGAACGGCGGAGGGAGGGGTCTC
GAGGCGCACGTGACGGCCCATCCTGCCCTTTTTTCGGAGTGCACCCGCAA
GCTCTTGCACCTGGTCGTGTACGAAGGGAGCGTGTGGGACCGTCTTGACG
CCGCTTCCAACGCCCTTTTGGCCTTGATTTTGTGCGATCGGGAGGCTTTC
CTCTGTCTGCTCGCCGGAATTTTGGAGGAGCAGCCTCCCAGTGTGAAGGA
GCGGCTGGGTCAAGAATTTCAAAAACTGATGTCGGCCATCCCGCCCCGCA
TGGAGGGAGGGGACGGAAGGGAGGGAGGGAGAAGACGGGGCCCGGCCTGG
GACCGGCAGACTAAGCTGGCATTCCGCCACCATCTGAGAGCGTTCGCCAC
CCAAGTCCGACCATTCATGCAAATGCGGTGA

Synonyms

Publications