EWM29999.1, cds678 (CDS) Nannochloropsis gaditana

Overview
NameEWM29999.1
Unique Namecds678
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:149371..149430 -
Alignment locationCM002456.1:149075..149137 -
Alignment locationCM002456.1:148824..148985 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29999.1
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100379g1.1022.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:149371..149430 -
CM002456.1supercontigCM002456.1:149075..149137 -
CM002456.1supercontigCM002456.1:148824..148985 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
BLAST of EWM29999.1 vs. NCBI_GenBank
Match: gi|585112609|gb|EWM29999.1| (uncharacterized protein Naga_100379g1 [Nannochloropsis gaditana])

HSP 1 Score: 193.741 bits (491), Expect = 1.134e-62
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query:    1 MARLNRERAAQDPSMDREPTLHFVEDRVETLEKVCGDPRLQNVQLYLADWGYTTDAARERAMLNPRIRILQLADFACMCQALGAREGEAGEEGR 94
            MARLNRERAAQDPSMDREPTLHFVEDRVETLEKVCGDPRLQNVQLYLADWGYTTDAARERAMLNPRIRILQLADFACMCQALGAREGEAGEEGR
Sbjct:    1 MARLNRERAAQDPSMDREPTLHFVEDRVETLEKVCGDPRLQNVQLYLADWGYTTDAARERAMLNPRIRILQLADFACMCQALGAREGEAGEEGR 94          
BLAST of EWM29999.1 vs. NCBI_GenBank
Match: gi|734396026|gb|KHN29345.1| (hypothetical protein glysoja_005069 [Glycine soja])

HSP 1 Score: 71.633 bits (174), Expect = 1.160e-14
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 0
Query:   20 TLHFVEDRVETLEKVCGDPRLQNVQLYLADWGYTTDAARERAMLNPRIRILQLADFACMCQ 80
            TLHFVEDR+  L+ V  +P L N  LYL +WG+ T   RE A  NPRI++++L+DF+   +
Sbjct:    8 TLHFVEDRLAILKNVVKEPELDNWNLYLVNWGFNTQKEREEAQANPRIQVIELSDFSSKLK 68          
BLAST of EWM29999.1 vs. NCBI_GenBank
Match: gi|502105245|ref|XP_004492759.1| (PREDICTED: uncharacterized protein LOC101511624 [Cicer arietinum])

HSP 1 Score: 73.9442 bits (180), Expect = 6.707e-14
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 0
Query:   20 TLHFVEDRVETLEKVCGDPRLQNVQLYLADWGYTTDAARERAMLNPRIRILQLADFACMCQ 80
            TLHFVEDR+ TL+ V  +P L N  LYL DWG+ T   RE A  NPRI++L+L+DF+   +
Sbjct:  208 TLHFVEDRLATLKNVIKEPELDNWNLYLVDWGFNTQKEREEAAANPRIQLLELSDFSSKLK 268          
BLAST of EWM29999.1 vs. NCBI_GenBank
Match: gi|1150154218|ref|XP_020219430.1| (uncharacterized protein LOC109802460 isoform X2 [Cajanus cajan])

HSP 1 Score: 73.1738 bits (178), Expect = 7.513e-14
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 0
Query:   20 TLHFVEDRVETLEKVCGDPRLQNVQLYLADWGYTTDAARERAMLNPRIRILQLADFACMCQ 80
            TLHFVEDR+ TL+ V  +P L N  LYL +WG+ T   RE A  NPRI++L+L+DF+   +
Sbjct:  158 TLHFVEDRLTTLKNVIKEPELDNWNLYLVNWGFNTQKEREEAAANPRIQLLELSDFSTKLK 218          
BLAST of EWM29999.1 vs. NCBI_GenBank
Match: gi|545375643|ref|XP_005651981.1| (hypothetical protein COCSUDRAFT_26736 [Coccomyxa subellipsoidea C-169] >gi|384253963|gb|EIE27437.1| hypothetical protein COCSUDRAFT_26736 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 73.559 bits (179), Expect = 1.851e-13
Identity = 33/56 (58.93%), Postives = 38/56 (67.86%), Query Frame = 0
Query:   20 TLHFVEDRVETLEKVCGDPRLQNVQLYLADWGYTTDAARERAMLNPRIRILQLADF 75
            + HFVED++ TLEKVC  P LQ  QLYL DWGY T   RERA  NPRI ++  A F
Sbjct:  247 SYHFVEDKLSTLEKVCKVPELQEWQLYLVDWGYNTREERERAEANPRISVINKAQF 302          
BLAST of EWM29999.1 vs. NCBI_GenBank
Match: gi|661887665|emb|CDP08796.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 72.7886 bits (177), Expect = 1.872e-13
Identity = 33/57 (57.89%), Postives = 39/57 (68.42%), Query Frame = 0
Query:   20 TLHFVEDRVETLEKVCGDPRLQNVQLYLADWGYTTDAARERAMLNPRIRILQLADFA 76
            +LHFVEDR+ TL+ V  +P L N  LYL DWGY T   RE A   PRI ILQL+DF+
Sbjct:  208 SLHFVEDRLATLKNVIKEPELDNWNLYLGDWGYNTQKEREEAASIPRIHILQLSDFS 264          
BLAST of EWM29999.1 vs. NCBI_GenBank
Match: gi|1150154216|ref|XP_020219429.1| (uncharacterized protein LOC109802460 isoform X1 [Cajanus cajan] >gi|1012353030|gb|KYP64218.1| hypothetical protein KK1_018809 [Cajanus cajan])

HSP 1 Score: 72.4034 bits (176), Expect = 2.953e-13
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 0
Query:   20 TLHFVEDRVETLEKVCGDPRLQNVQLYLADWGYTTDAARERAMLNPRIRILQLADFACMCQ 80
            TLHFVEDR+ TL+ V  +P L N  LYL +WG+ T   RE A  NPRI++L+L+DF+   +
Sbjct:  208 TLHFVEDRLTTLKNVIKEPELDNWNLYLVNWGFNTQKEREEAAANPRIQLLELSDFSTKLK 268          
BLAST of EWM29999.1 vs. NCBI_GenBank
Match: gi|504975326|ref|WP_015162428.1| (putative phosphatase [Chamaesiphon minutus] >gi|428020251|gb|AFY96345.1| putative phosphatase [Chamaesiphon minutus PCC 6605])

HSP 1 Score: 72.4034 bits (176), Expect = 3.024e-13
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 0
Query:   17 REPTLHFVEDRVETLEKVCGDPRLQNVQLYLADWGYTTDAARERAMLNPRIRILQLADFACMCQALGAREGEAGEEG 93
            + P + FVEDR+ TL KV   P L++V+LYLADWGY T A R+ A+   RI+IL LAD   +   L      +  +G
Sbjct:  193 KAPAIWFVEDRLNTLAKVATQPELESVKLYLADWGYNTAAERQAALQQSRIQILSLADLPTLGGTLKKTAAASASKG 269          
BLAST of EWM29999.1 vs. NCBI_GenBank
Match: gi|255541628|ref|XP_002511878.1| (PREDICTED: uncharacterized protein LOC8261897 [Ricinus communis] >gi|223549058|gb|EEF50547.1| conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 72.4034 bits (176), Expect = 3.046e-13
Identity = 33/57 (57.89%), Postives = 39/57 (68.42%), Query Frame = 0
Query:   20 TLHFVEDRVETLEKVCGDPRLQNVQLYLADWGYTTDAARERAMLNPRIRILQLADFA 76
            TLHFVEDR+ TL+ V  +P L    LYL DWGY T   RE A   PRIR+LQL+DF+
Sbjct:  208 TLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIRLLQLSDFS 264          
BLAST of EWM29999.1 vs. NCBI_GenBank
Match: gi|950962836|ref|XP_014498196.1| (PREDICTED: uncharacterized protein LOC106759510 [Vigna radiata var. radiata])

HSP 1 Score: 72.4034 bits (176), Expect = 3.048e-13
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 0
Query:   20 TLHFVEDRVETLEKVCGDPRLQNVQLYLADWGYTTDAARERAMLNPRIRILQLADFAC 77
            TLHFVEDR  TL+ V  +P L N  LYL +WG+ T   RE A  NPRI++L+L+DF+ 
Sbjct:  209 TLHFVEDRFATLKNVIKEPELDNWNLYLVNWGFNTQKEREEAAANPRIQVLELSDFSS 266          
The following BLAST results are available for this feature:
BLAST of EWM29999.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112609|gb|EWM29999.1|1.134e-62100.00uncharacterized protein Naga_100379g1 [Nannochloro... [more]
gi|734396026|gb|KHN29345.1|1.160e-1447.54hypothetical protein glysoja_005069 [Glycine soja][more]
gi|502105245|ref|XP_004492759.1|6.707e-1452.46PREDICTED: uncharacterized protein LOC101511624 [C... [more]
gi|1150154218|ref|XP_020219430.1|7.513e-1450.82uncharacterized protein LOC109802460 isoform X2 [C... [more]
gi|545375643|ref|XP_005651981.1|1.851e-1358.93hypothetical protein COCSUDRAFT_26736 [Coccomyxa s... [more]
gi|661887665|emb|CDP08796.1|1.872e-1357.89unnamed protein product [Coffea canephora][more]
gi|1150154216|ref|XP_020219429.1|2.953e-1350.82uncharacterized protein LOC109802460 isoform X1 [C... [more]
gi|504975326|ref|WP_015162428.1|3.024e-1344.16putative phosphatase [Chamaesiphon minutus] >gi|42... [more]
gi|255541628|ref|XP_002511878.1|3.046e-1357.89PREDICTED: uncharacterized protein LOC8261897 [Ric... [more]
gi|950962836|ref|XP_014498196.1|3.048e-1353.45PREDICTED: uncharacterized protein LOC106759510 [V... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna678rna678Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications