rna678, rna678 (mRNA) Nannochloropsis gaditana

Overview
Namerna678
Unique Namerna678
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1016
Alignment locationCM002456.1:147881..149501 -

Link to JBrowse

Properties
Property NameValue
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100379g1.1022.mrna
Orig protein idgnl|cribi|Naga_100379g1.1022
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:147881..149501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100379g1gene651Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna678rna678-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29999.1cds678Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna678 ID=rna678|Name=rna678|organism=Nannochloropsis gaditana|type=mRNA|length=1016bp
GCCTTCTGGTGTCTGTGCTGTGGAAGCTCGCATTTTGCTAGTTTGGTGGC
TTGGTTGGTGGTCATGACCACTCGTTTTTCCAGCCTGGGCTCCCATCACT
CCCGGACCCCTCCCTTATGTCTTTTTTCTTGCCCGTGTTCCCACAGGTTT
ACAATGGTGAACCTCCGCATCCAAAAGCGCTTGGCTGCAAGCGTGTTGAA
GACAGGCAAACGTAAAGTATGGCTTGACCCCAACGAAACGACGGAGATCT
CCATGGCCAATTCCCGACAGAACGTCCGCAAGCTGATCAAGGACGGCTTC
GTTTTAAAGAAACCGCAAGTAATCCATTCCCGCTCCCGGTACCTGACCCG
CCTGGAGGCCAAGCGCAAGGGCCGTCACACCGGCTACGGGAAACGCAAGG
GTACGGCCAATGCCCGCCTGCCTATGAAGATCGTGTGGCTCCGACGCACT
CGAGTCCTTCGCCGACTCCTCCGCAAGTACCGGGACGCCAAGAAGGTGGA
CAAGCACCTCTACCACGACCTCTACCAGCGTGCCAAGGGGAACCAGTTTA
AGAACAAGCGCGTGCTCATGGAGGCAATCCACAAGATGAAGGCGGAGAAG
GCTCGTCTCACTCAGCTCGCCGCGCAATCAGAGGCCCGCCGGGCAAAGGC
CAAGAGCAAGACAGAGCGAAAGGAGAAGCAAAAAATGGAGGCCGCGGGAC
TGGCGGAGGCTGAGGAAGGAAAGTAAAGGGACGCTAGCTCACGGAGAGAT
CGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGTTGAAAAGGC
GTATTCTGTTGCTTGCTTTTCGCGGCGCGTCTCTGCCTTGCAGGATGAGG
CAAGGCGACCCGGAGGAGTGGGGCGGGGGGGCAAGAGCGCGTACGGAATA
AAGTCTCAATACTATCCTCCTCACTGATTTGGGTAAGGCTTTTTGGGCCC
GTTGCCGCGCTACCAGCCCTGCAGCTGCCATTGCTTTTGCACTGTGGTCA
AATCAATTTTATTTCT
back to top

protein sequence of rna678

>rna678-protein ID=rna678-protein|Name=rna678|organism=Nannochloropsis gaditana|type=polypeptide|length=94bp
MARLNRERAAQDPSMDREPTLHFVEDRVETLEKVCGDPRLQNVQLYLADW
GYTTDAARERAMLNPRIRILQLADFACMCQALGAREGEAGEEGR
back to top

mRNA from alignment at CM002456.1:147881..149501-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna678 ID=rna678|Name=rna678|organism=Nannochloropsis gaditana|type=mRNA|length=1621bp|location=Sequence derived from alignment at CM002456.1:147881..149501- (Nannochloropsis gaditana)
CAGGCATTGAGCTCCCCCGCGAGCGCATTTATGGCCTAGGCTCTGGCCCC
AAGACGGATATATTGGCGCGCATGGCGCGTTTGAACAGAGAGAGGGCGGC
GCAGGACCCAAGCATGGACAGGGAGCCGACGGTGAGGGAGGGAGGGGGGG
CGGGGAAGAGGGAGGAAGGGAGGAAGGGAGGGAGGGGTCGCGTTTAGGCC
TTTTCTCTTAGAGATTGATGTCGTTTAGAATATTTTGCCTGGCATGGATA
CCTTGGGGTTGAGCCTCTGGCATTCAAGCTCCATCATGTCCCTCTTCTTG
TCCTCGTGGGGGCACCCGAGTCCTTTTCCGTCATCATCCATGGTGCATCC
CTCGTTTCCTACAGTTGCACTTCGTGGAAGATCGGGTCGAGACATTGGAA
AAGGTGTGCGGAGATCCCCGCTTGCAGGTCCGTCCGCCCTTCCTCCCTCC
CGCCCTCTTTCCCGCCCTCCCTCCCATCCTCACCCCTCCCTTCAATCCCT
ATCACCCCTCCCTCAGAACGTCCAACTCTACCTGGCAGACTGGGGCTACA
CCACAGACGCGGCGCGGGAAAGGGCGATGCTGAACCCTCGCATTCGGATC
CTGCAGCTCGCCGACTTTGCCTGCATGTGCCAGGCTCTGGGCGCGAGGGA
GGGAGAGGCCGGGGAGGAGGGCAGGTGAGGGAGGGAGGGAGGGAGGGAGG
GGGCAAGGAAGCTCGAAAGAGGATATGAGGCGTGGACTTCAAAGCCATGA
GGGATAGCGTGAAGGGCGGCAATCATTTGTTTCCTGTCCTGCGAAGGGGC
GAGAGCCTTTCGTCTTGTATTACTGCGACAGAACCTTGATGCCCGCCTTA
CGCCAAAGTCGTAACATCGCTGCCCCTCCCTCCCTCCGTCCCTCCCTCCC
TCCCTTCCCCCATCCCTCCTCCCTCCCTCAGCTCCTGCTCCTTCGCCTGT
CTCCACGCTGCCTGCACCCCGTCGTGTGGAGGCAGTGAAAACAATCTAGC
GGTAGAAAAGATCGTTTTTCAGCCCGAACCCCCTCCTTCCCCTGTCTACA
CGGTGGCGAACGCCGGGGAGGGAGGGCGCGAGGGAGGTGGGGAAGGAGAG
AGGGCACAGGCAGTCGTGTGGAAAGGAAGCGGGTCGAGTTGGTCGGAGCG
AGAGTGGGAGAGGAAGGACTTGGAGAGCGTGATGGCGAGTATTGTACAGG
AAAGGGAGGAGGAGGAGGCGGGAGGGCGTTCGGAATGGGAGGTGTAAGCG
AAGGGGAAGGGAGGGAGGGAAGGAAGGAGGGAGGGAGGGACTGTTTGTTG
TGTAGGTAGCTTCAGTAGAAAGGAGGGAAAATCGGACCTGCTGCGACAGG
AGTCCTGTACAAGCATTCTATGCTTAGTCATGCCACGCAGTTGAATTTAG
TATCAGCCAGTGATTAGACCAGAGCCAGATCAAGGCGTGACTGCGAAGTT
GGTATCAAGGGGGAGAGGCGAGGGGGAGACGAGTTAAGGCACCTTTCCCT
TTAAATCCTGCTTCAAAGGGACCACCTGCAACCGGCGCCGGAGACCCGCG
TAGTTATGCGTCGAAATTTCGTGAGAACGGTTCCCCCAAAAATGAACGAA
ATGATGTCTTTGGGAGTTCCT
back to top

Coding sequence (CDS) from alignment at CM002456.1:147881..149501-

>rna678 ID=rna678|Name=rna678|organism=Nannochloropsis gaditana|type=CDS|length=855bp|location=Sequence derived from alignment at CM002456.1:147881..149501- (Nannochloropsis gaditana)
AACGTCCAACTCTACCTGGCAGACTGGGGCTACACCACAGACGCGGCGCG
GGAAAGGGCGATGCTGAACCCTCGCATTCGGATCCTGCAGCTCGCCGACT
TTGCCTGCATGTGCCAGGCTCTGGGCGCGAGGGAGGGAGAGGCCGGGGAG
GAGGGCAGGTGATTGCACTTCGTGGAAGATCGGGTCGAGACATTGGAAAA
GGTGTGCGGAGATCCCCGCTTGCAGATGGCGCGTTTGAACAGAGAGAGGG
CGGCGCAGGACCCAAGCATGGACAGGGAGCCGACGAACGTCCAACTCTAC
CTGGCAGACTGGGGCTACACCACAGACGCGGCGCGGGAAAGGGCGATGCT
GAACCCTCGCATTCGGATCCTGCAGCTCGCCGACTTTGCCTGCATGTGCC
AGGCTCTGGGCGCGAGGGAGGGAGAGGCCGGGGAGGAGGGCAGGTGATTG
CACTTCGTGGAAGATCGGGTCGAGACATTGGAAAAGGTGTGCGGAGATCC
CCGCTTGCAGATGGCGCGTTTGAACAGAGAGAGGGCGGCGCAGGACCCAA
GCATGGACAGGGAGCCGACGAACGTCCAACTCTACCTGGCAGACTGGGGC
TACACCACAGACGCGGCGCGGGAAAGGGCGATGCTGAACCCTCGCATTCG
GATCCTGCAGCTCGCCGACTTTGCCTGCATGTGCCAGGCTCTGGGCGCGA
GGGAGGGAGAGGCCGGGGAGGAGGGCAGGTGATTGCACTTCGTGGAAGAT
CGGGTCGAGACATTGGAAAAGGTGTGCGGAGATCCCCGCTTGCAGATGGC
GCGTTTGAACAGAGAGAGGGCGGCGCAGGACCCAAGCATGGACAGGGAGC
CGACG
back to top
Synonyms
Publications