rna672, rna672 (mRNA) Nannochloropsis gaditana

Overview
Namerna672
Unique Namerna672
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1183
Alignment locationCM002456.1:131113..132849 +

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Properties
Property NameValue
ProductProtein of unknown function DUF3493
Orig transcript idgnl|cribi|Naga_100425g2.7073.mrna
Orig protein idgnl|cribi|Naga_100425g2.7073
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:131113..132849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100425g2gene645Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna672rna672-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30002.1cds672Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna672 ID=rna672|Name=rna672|organism=Nannochloropsis gaditana|type=mRNA|length=1183bp
GGACAACAGAGCGAGGATAGAGAAGGTATGTCAGGATGAATGAGAGAGGA
GGGAGGCACCAGCGGTCAATAGAACCACCGTACTCCGTGTGGTGGTCATG
GCACTGATTCATTGCGTGTGCTGCTTCAAGTCCTACCAAAATGATCCACC
ACGCCGCCGGCTGGGGGGCGTGCGGGTCCAAACATTTTGGTGATCCAATC
GGTGTTGAGCCCATGAAACCACCCTTTCTTAACATGCGCTTTCATCCTTT
CGTATTTATCGTAACGAGGTCCCTTTCGGGGCGTTAGCAGATTTTTGTTT
GGTCAACCTCGTCTTTCACCTAATATGGCGCGAAATGGCCTGAGGGAGCA
GCAGTGACATCACAAAGCCATACCATAGACGATATTCCTGCCATCTATTC
GGGGCCTAGTAGTTTGACTCGGTGGAAAGGCAATGTACTCTAAGTCTGGC
TTAAGCCCGTGCACTTTGCTTGAGCCATGCATGGGTGGGCAATGAAGAGA
TGAGGAGTTCGCGTGAACTAACTTTCAGGAGGTTCTAAACAACGCGAAGT
AAAGAACAGCTCTCAACACGGAATGGGCGACAAGGACGCCATTTTCTACG
ACTATCACGAAGAATTCGCTGAAAGCAAGTTTGATCGGGCACTTTTTGAT
CGACTTGTCCATACATGCGTCACATATGTGCCGCGGGGGAAGGTGACTAC
CTACGGACACATCGCACGTTTGTGTCATTGCCCCAAACATGCACGGCACG
TCGGTCAGGCCTTGCGACGACTGCCCTTGAACACAAGCGTGCCGTGGCAA
CGCGTTATAAATGCTTCGTACACTATCTCACCGCGCGGCGATGGAGGAAC
TGGCGCCGAAGAGCAAGCCATGAGGCTCGGAGAAGAGGGAGTCACGGTCT
CTCAAGATGCCATGGGCGTTTGGAGAGTGCCCCGATCGTATGCGTGGGAG
ACGGGGAGCGCCCAGTCTTTAGCGGAACTGATAAAAGGAAGACAAGCGGA
GGAAGAGGAGGATGGAATGACAGCAAAAGAAGTGAAAGAGGGAGAGAGTC
ATAAAATGAAGGAAAAGAGTAGAAAGAGATGCAAGCGTGAAGAGGGCACA
AAGGAACAGCAGTCGATCCAACGCGACATGATTAGGACTAGTGCACCGTA
AAAATCAAAGAAACGACTGTTGAATACCGATCT
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protein sequence of rna672

>rna672-protein ID=rna672-protein|Name=rna672|organism=Nannochloropsis gaditana|type=polypeptide|length=494bp
MLRKGGFMGSTPIGSPKCLDPHAPQPAAWWIILVGLEAAHAMNQCHDHHT
EYGGSIDRWCLPPLSFILTYLLYPRSVVLRFLIGSVKMKVSSMHRFCRRL
PALLLLAVSCSAFLFPIPSRIPTSSAQVLHATKKSKQTFSELGNTVPPPP
PPTSTPPPFATSTDETSFEEEEMEAEEENAAVTGLSPTMYDKLRSEATTP
FRSLRLFIYGGIGVGASLGGYTAVTQLVQSLQHRPDALPLSQSILNVGVD
FGVAAAAAGAWVFENRLKQVTDKEMQALRAKEPFRLTFDMKKARERALSG
LPVTFKVGLNETRSASVKDLREKGGQHLIVLAAPKGELADALFGARVGKT
LFAKNNVMIAPFVIQGGNDKTGEEAIGVKGFGGMSDKATGMKEAMIDSEA
YVAKPADSASWATYIDEELEDAVRQGNEKARNTGIGIVMRKDGSIIRRGV
GQPDWKEVVAELTGAKGTSEFGDAYVPPIGAGGGKGGKKKRKKG
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mRNA from alignment at CM002456.1:131113..132849+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna672 ID=rna672|Name=rna672|organism=Nannochloropsis gaditana|type=mRNA|length=1737bp|location=Sequence derived from alignment at CM002456.1:131113..132849+ (Nannochloropsis gaditana)
GCATGTTAAGAAAGGGTGGTTTCATGGGCTCAACACCGATTGGATCACCA
AAATGTTTGGACCCGCACGCCCCCCAGCCGGCGGCGTGGTGGATCATTTT
GGTAGGACTTGAAGCAGCACACGCAATGAATCAGTGCCATGACCACCACA
CGGAGTACGGTGGTTCTATTGACCGCtggtgcctccctcctctctcattc
ATCCTGACATACCTTCTCTATCCTCGCTCTGTTGTCCTGCGTTTTCTCAT
AGGCTCAGTCAAGATGAAGGTATCATCAATGCACCGCTTCTGTCGTCGCC
TCCCCgctttgctcctcctcgcagtGTCGTGCTCTGCGTTCTTATTTCCC
ATACCCTCAAGAATACCAACATCCTCAGCCCAAGTCTTGCACGCGACCAA
GAAATCCAAACAGACTTTCTCTGAGCTGGGGAATaccgtcccccctcctc
cgcctccgacgtcaacccccccccccttcgctaCTTCGACTGACGAGACT
AgctttgaagaggaagaaatggaagcagaggaagaaaacgcAGCCGTAAC
AGGGCTCTCGCCCACCATGTATGACAAGCTTCGTAGTgaggccaccaccc
ccttccGGTCCCTTCGCCTGTTCATTTACGGTGGCATCGGCGTCGGTGCC
AGCCTGGGGGGCTACACGGCGGTGACGCAGTTGGTCCAATCTTTGCAACA
TCGCCCGGACgccttgcctctctctcaGTCCATCCTCAACGTCGGGGTGG
ATTTTGGGGTcgcggccgccgcggccggGGCCTGGGTGTTCGAGAATCGC
CTGAAGCAAGTGACGGACAAGGAAATGCAAGCCTTGCGGGCCAAGGAGCC
CTTTCGCCTCACTTTCGACATGAAAAAAGCGCGCGAACGGGCCTTGAGCG
GTCTTCCCGTCACCTTCAAGGTGGGGCTGAACGAAACTAGGAGTGCGTCG
GTGAAGGAcctgagggagaagggagggcagcattTGATCGTTTTGGCTGC
CCCCAAAGGAGAGCTGGCTGACGCCCTCTTTGGCGCCCGCGTTGGGAAGA
CACTGTTTGCCAAAAACAACGTCATGATCGCACCCTTTGTCATCCAGGGC
GGAAACGAcaagacgggggaggaagccatcGGTGTGAAAGGCTTCGGGGG
GATGTCGGACAAAGCCACGGGTATGAAAGAGGCCATGATTGACTCGGAGG
CCTACGTGGCAAAACCCGCGGATTCTGCTTCCTGGGCTACCTACATCGAT
GAAGAGCTCGAGGACGCCGTGCGGCAAGGGAATGAGAAAGCCCGAAACAC
TGGGATCGGGATTGTGATGCGGAAAGACGGCAGTATCATCcggaggggcg
tgggccAACCGGattggaaggaggtggtTGCTGAGTTGACGGGTGCTAAG
GGAACGAGCGAATTTGGTGATGCATACGTGCCTCCCattggcgcaggagg
agggaagggcggcaaaaagaagaggaagaagggataaATGGGTTGCAGAA
GTTGAGAATTCGCGTTTTAGTTTTGTAAAAAAAGAAATCATGGCGTATGG
TATCGTCGCTCCTGTGTATggggtggggtggggaggttgattGTGCTGTT
GACATTACACACACCTTTATCTTGACTTTATATTATGTGACACAACATGC
AGCTAATTTTGTCGTCAAAACAGAAGGAAGGTCTGTATGAGACAGGGTGT
TGGCGTCAATGTCAGAGTCATTCATTCGCATTCCATT
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Coding sequence (CDS) from alignment at CM002456.1:131113..132849+

>rna672 ID=rna672|Name=rna672|organism=Nannochloropsis gaditana|type=CDS|length=1485bp|location=Sequence derived from alignment at CM002456.1:131113..132849+ (Nannochloropsis gaditana)
ATGTTAAGAAAGGGTGGTTTCATGGGCTCAACACCGATTGGATCACCAAA
ATGTTTGGACCCGCACGCCCCCCAGCCGGCGGCGTGGTGGATCATTTTGG
TAGGACTTGAAGCAGCACACGCAATGAATCAGTGCCATGACCACCACACG
GAGTACGGTGGTTCTATTGACCGCtggtgcctccctcctctctcattcAT
CCTGACATACCTTCTCTATCCTCGCTCTGTTGTCCTGCGTTTTCTCATAG
GCTCAGTCAAGATGAAGGTATCATCAATGCACCGCTTCTGTCGTCGCCTC
CCCgctttgctcctcctcgcagtGTCGTGCTCTGCGTTCTTATTTCCCAT
ACCCTCAAGAATACCAACATCCTCAGCCCAAGTCTTGCACGCGACCAAGA
AATCCAAACAGACTTTCTCTGAGCTGGGGAATaccgtcccccctcctccg
cctccgacgtcaacccccccccccttcgctaCTTCGACTGACGAGACTAg
ctttgaagaggaagaaatggaagcagaggaagaaaacgcAGCCGTAACAG
GGCTCTCGCCCACCATGTATGACAAGCTTCGTAGTgaggccaccaccccc
ttccGGTCCCTTCGCCTGTTCATTTACGGTGGCATCGGCGTCGGTGCCAG
CCTGGGGGGCTACACGGCGGTGACGCAGTTGGTCCAATCTTTGCAACATC
GCCCGGACgccttgcctctctctcaGTCCATCCTCAACGTCGGGGTGGAT
TTTGGGGTcgcggccgccgcggccggGGCCTGGGTGTTCGAGAATCGCCT
GAAGCAAGTGACGGACAAGGAAATGCAAGCCTTGCGGGCCAAGGAGCCCT
TTCGCCTCACTTTCGACATGAAAAAAGCGCGCGAACGGGCCTTGAGCGGT
CTTCCCGTCACCTTCAAGGTGGGGCTGAACGAAACTAGGAGTGCGTCGGT
GAAGGAcctgagggagaagggagggcagcattTGATCGTTTTGGCTGCCC
CCAAAGGAGAGCTGGCTGACGCCCTCTTTGGCGCCCGCGTTGGGAAGACA
CTGTTTGCCAAAAACAACGTCATGATCGCACCCTTTGTCATCCAGGGCGG
AAACGAcaagacgggggaggaagccatcGGTGTGAAAGGCTTCGGGGGGA
TGTCGGACAAAGCCACGGGTATGAAAGAGGCCATGATTGACTCGGAGGCC
TACGTGGCAAAACCCGCGGATTCTGCTTCCTGGGCTACCTACATCGATGA
AGAGCTCGAGGACGCCGTGCGGCAAGGGAATGAGAAAGCCCGAAACACTG
GGATCGGGATTGTGATGCGGAAAGACGGCAGTATCATCcggaggggcgtg
ggccAACCGGattggaaggaggtggtTGCTGAGTTGACGGGTGCTAAGGG
AACGAGCGAATTTGGTGATGCATACGTGCCTCCCattggcgcaggaggag
ggaagggcggcaaaaagaagaggaagaagggataa
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Synonyms
Publications