rna671, rna671 (mRNA) Nannochloropsis gaditana

Overview
Namerna671
Unique Namerna671
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length753
Alignment locationCM002456.1:130072..131349 -

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Properties
Property NameValue
Productmgmt family protein
Orig transcript idgnl|cribi|Naga_100425g3.7075.mrna
Orig protein idgnl|cribi|Naga_100425g3.7075
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:130072..131349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100425g3gene644Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna671rna671-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30004.1cds671Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna671 ID=rna671|Name=rna671|organism=Nannochloropsis gaditana|type=mRNA|length=753bp
ATGCTGCCCTTAAACAGTTTTTTAAAGACCAGACGGTATGGAGGTAAAGC
CAAGGGCGGATCGAGAAGAATGCTACGTGCCCGACATTTTCTACGCTCTT
TTGACGGGGCGAAGTGCTACCGTGTGCATGCCTGTACGTTTACAGTCATG
ACCGCCCGATATTCGAGCCCGAAAGGGACGTTGTCCTCCGGGATATTATC
AAATGCTCGCTTCCTGACAAATAAGACAGCTGGCAATCCTTTAAATAAAG
ATCAGGTAGGCGAAACCGCACATGCTGACGTTGAAAACCAAGAAAAGACA
TCTGCGGAAATGGAGCGTCGAATGCAGGCGTTGAAGCGATTTGGCCTCCC
TAAAAGTTTGGATAAAGAAGCCATTTCAGCGCCACAAGGGAAGCCCATAT
CTGAGCGAAAAAGATCAGTGACTACATCTGGTATCGAGAGAATCAGACGA
CTAAAGGATGGAAAAGCTGAGCAGAGCTACGACGGTGTGTGGGTCGGAAT
TTTGACAAGGATTAAGCCCGAATTATCTCGTATTGTCATGCACCTCGGGG
TCGTGCGAAGCCTAATTGAAGATGACGGGAGGGAAAGTGACACATTCATT
GCCACATGTACATACACCCACGTGAATCGATTCCCTGCGCTAGATTCTCA
ACCTTTTAAACACTTGTTCGAGAATTCCAATCAGAAACATGGTGCCTGCA
AAAAATTGAAGGCACTTGGTATTACGGAGGCTCGGGAGTGTGAAAGTGTG
TAG
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protein sequence of rna671

>rna671-protein ID=rna671-protein|Name=rna671|organism=Nannochloropsis gaditana|type=polypeptide|length=192bp
MGDKDAIFYDYHEEFAESKFDRALFDRLVHTCVTYVPRGKVTTYGHIARL
CHCPKHARHVGQALRRLPLNTSVPWQRVINASYTISPRGDGGTGAEEQAM
RLGEEGVTVSQDAMGVWRVPRSYAWETGSAQSLAELIKGRQAEEEEDGMT
AKEVKEGESHKMKEKSRKRCKREEGTKEQQSIQRDMIRTSAP
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mRNA from alignment at CM002456.1:130072..131349-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna671 ID=rna671|Name=rna671|organism=Nannochloropsis gaditana|type=mRNA|length=1278bp|location=Sequence derived from alignment at CM002456.1:130072..131349- (Nannochloropsis gaditana)
GGACAACAGAGCGAGGATAGAGAAGGTATGTCAGGATGAATGAGAGAGGA
GGGAGGCACCAGCGGTCAATAGAACCACCGTACTCCGTGTGGTGGTCATG
GCACTGATTCATTGCGTGTGCTGCTTCAAGTCCTACCAAAATGATCCACC
ACGCCGCCGGCTGGGGGGCGTGCGGGTCCAAACATTTTGGTGATCCAATC
GGTGTTGAGCCCATGAAACCACCCTTTCTTAACATGCGCTTTCATCCTTT
CGTATTTATCGTAACGAGGTCCCTTTCGGGGCGTTAGCAGATTTTTGTTT
GGTCAACCTCGTCTTTCACCTAATATGGCGCGAAATGGCCTGAGGGAGCA
GCAGTGACATCACAAAGCCATACCATAGACGATATTCCTGCCATCTATTC
GGGGCCTAGTAGTTTGACTCGGTGGAAAGGCAATGTACTCTAAGTCTGGC
TTAAGCCCGTGCACTTTGCTTGAGCCATGCATGGGTGGGCAATGAAGAGA
TGAGGAGTTCGCGTGAACTAACTTTCAGGAGGTTCTAAACAACGCGAAGT
AAAGAACAGCTCTCAACACGGAATGGGCGACAAGGACGCCATTTTCTACG
ACTATCACGAAGAATTCGCTGAAAGCAAGTTTGATCGGGCACTTTTTGAT
CGACTTGTCCATACATGCGTCACATATGTGCCGCGGGGGAAGGTGACTAC
CTACGGTGAGACTCGTTGGCGAAAGAAATTGAACAAATTTCAAGCACCTC
ATTCACCTTTTAACGATCCTCTCGTACACACGCTCTTAATCACCATGAAG
GACACATCGCACGTTTGTGTCATTGCCCCAAACATGCACGGCACGTCGGT
CAGGCCTTGCGACGACTGCCCTTGAACACAAGCGTGCCGTGGCAACGCGT
TATAAATGCTTCGTACACTATCTCACCGCGCGGCGATGGAGGAACTGGCG
CCGAAGAGCAAGCCATGAGGCTCGGAGAAGAGGGAGTCACGGTCTCTCAA
GATGCCATGGGCGTTTGGAGAGTGCCCCGATCGTATGCGTGGGAGACGGG
GAGCGCCCAGTCTTTAGCGGAACTGATAAAAGGAAGACAAGCGGAGGAAG
AGGAGGATGGAATGACAGCAAAAGAAGTGAAAGAGGGAGAGAGTCATAAA
ATGAAGGAAAAGAGTAGAAAGAGATGCAAGCGTGAAGAGGGCACAAAGGA
ACAGCAGTCGATCCAACGCGACATGATTAGGACTAGTGCACCGTAAAAAT
CAAAGAAACGACTGTTGAATACCGATCT
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Coding sequence (CDS) from alignment at CM002456.1:130072..131349-

>rna671 ID=rna671|Name=rna671|organism=Nannochloropsis gaditana|type=CDS|length=1158bp|location=Sequence derived from alignment at CM002456.1:130072..131349- (Nannochloropsis gaditana)
GACACATCGCACGTTTGTGTCATTGCCCCAAACATGCACGGCACGTCGGT
CAGGCCTTGCGACGACTGCCCTTGAACACAAGCGTGCCGTGGCAACGCGT
TATAAATGCTTCGTACACTATCTCACCGCGCGGCGATGGAGGAACTGGCG
CCGAAGAGCAAGCCATGAGGCTCGGAGAAGAGGGAGTCACGGTCTCTCAA
GATGCCATGGGCGTTTGGAGAGTGCCCCGATCGTATGCGTGGGAGACGGG
GAGCGCCCAGTCTTTAGCGGAACTGATAAAAGGAAGACAAGCGGAGGAAG
AGGAGGATGGAATGACAGCAAAAGAAGTGAAAGAGGGAGAGAGTCATAAA
ATGAAGGAAAAGAGTAGAAAGAGATGCAAGCGTGAAGAGGGCACAAAGGA
ACAGCAGTCGATCCAACGCGACATGATTAGGACTAGTGCACCGTAAATGG
GCGACAAGGACGCCATTTTCTACGACTATCACGAAGAATTCGCTGAAAGC
AAGTTTGATCGGGCACTTTTTGATCGACTTGTCCATACATGCGTCACATA
TGTGCCGCGGGGGAAGGTGACTACCTACGGACACATCGCACGTTTGTGTC
ATTGCCCCAAACATGCACGGCACGTCGGTCAGGCCTTGCGACGACTGCCC
TTGAACACAAGCGTGCCGTGGCAACGCGTTATAAATGCTTCGTACACTAT
CTCACCGCGCGGCGATGGAGGAACTGGCGCCGAAGAGCAAGCCATGAGGC
TCGGAGAAGAGGGAGTCACGGTCTCTCAAGATGCCATGGGCGTTTGGAGA
GTGCCCCGATCGTATGCGTGGGAGACGGGGAGCGCCCAGTCTTTAGCGGA
ACTGATAAAAGGAAGACAAGCGGAGGAAGAGGAGGATGGAATGACAGCAA
AAGAAGTGAAAGAGGGAGAGAGTCATAAAATGAAGGAAAAGAGTAGAAAG
AGATGCAAGCGTGAAGAGGGCACAAAGGAACAGCAGTCGATCCAACGCGA
CATGATTAGGACTAGTGCACCGTAAATGGGCGACAAGGACGCCATTTTCT
ACGACTATCACGAAGAATTCGCTGAAAGCAAGTTTGATCGGGCACTTTTT
GATCGACTTGTCCATACATGCGTCACATATGTGCCGCGGGGGAAGGTGAC
TACCTACG
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Synonyms
Publications